MULTISPECIES: TylF/MycF/NovP-related O-methyltransferase [Mycobacterium]
Protein Classification
class I SAM-dependent methyltransferase( domain architecture ID 106779)
class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||
| AdoMet_MTases super family | cl17173 | S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
12-267 | 1.32e-124 | |||||
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). The actual alignment was detected with superfamily member pfam05711: Pssm-ID: 473071 Cd Length: 255 Bit Score: 354.73 E-value: 1.32e-124
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| Name | Accession | Description | Interval | E-value | |||||
| TylF | pfam05711 | Macrocin-O-methyltransferase (TylF); This family consists of bacterial macrocin ... |
12-267 | 1.32e-124 | |||||
Macrocin-O-methyltransferase (TylF); This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex. The structure of one representative sequence from this family, NovP, shows it to be an S-adenosyl-l-methionine-dependent O-methyltransferase that catalyzes the penultimate step in the biosynthesis of the aminocoumarin antibiotic novobiocin. Specifically, it methylates at 4-OH of the noviose moiety, and the resultant methoxy group is important for the potency of the mature antibiotic. It is likely that the key structural features of NovP are common to the rest of the family and include: a helical 'lid' region that gates access to the co-substrate binding pocket and an active centre that contains a 3-Asp putative metal binding site. A further conserved Asp probably acts as the general base that initiates the reaction by de-protonating the 4-OH group of the noviose unit. Pssm-ID: 428598 Cd Length: 255 Bit Score: 354.73 E-value: 1.32e-124
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| TrmR | COG4122 | tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
161-233 | 2.32e-05 | |||||
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 443298 Cd Length: 173 Bit Score: 43.63 E-value: 2.32e-05
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| Name | Accession | Description | Interval | E-value | |||||
| TylF | pfam05711 | Macrocin-O-methyltransferase (TylF); This family consists of bacterial macrocin ... |
12-267 | 1.32e-124 | |||||
Macrocin-O-methyltransferase (TylF); This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex. The structure of one representative sequence from this family, NovP, shows it to be an S-adenosyl-l-methionine-dependent O-methyltransferase that catalyzes the penultimate step in the biosynthesis of the aminocoumarin antibiotic novobiocin. Specifically, it methylates at 4-OH of the noviose moiety, and the resultant methoxy group is important for the potency of the mature antibiotic. It is likely that the key structural features of NovP are common to the rest of the family and include: a helical 'lid' region that gates access to the co-substrate binding pocket and an active centre that contains a 3-Asp putative metal binding site. A further conserved Asp probably acts as the general base that initiates the reaction by de-protonating the 4-OH group of the noviose unit. Pssm-ID: 428598 Cd Length: 255 Bit Score: 354.73 E-value: 1.32e-124
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| Methyltransf_24 | pfam13578 | Methyltransferase domain; This family appears to be a methyltransferase domain. |
98-232 | 2.77e-08 | |||||
Methyltransferase domain; This family appears to be a methyltransferase domain. Pssm-ID: 433324 [Multi-domain] Cd Length: 106 Bit Score: 50.77 E-value: 2.77e-08
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| TrmR | COG4122 | tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
161-233 | 2.32e-05 | |||||
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 443298 Cd Length: 173 Bit Score: 43.63 E-value: 2.32e-05
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| RAD4 | COG5535 | DNA repair protein RAD4 [DNA replication, recombination, and repair]; |
150-247 | 9.22e-03 | |||||
DNA repair protein RAD4 [DNA replication, recombination, and repair]; Pssm-ID: 227822 [Multi-domain] Cd Length: 650 Bit Score: 37.14 E-value: 9.22e-03
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