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Conserved domains on  [gi|497740060|ref|WP_010054244|]
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MULTISPECIES: RicAFT regulatory complex protein RicA family protein [Carnobacterium]

Protein Classification

RicAFT regulatory complex protein RicA family protein( domain architecture ID 10008615)

RicAFT regulatory complex protein RicA family protein similar to Bacillus subtilis RicA (a component of the RicAFT complex) which is involved in genetic competence, sporulation, biofilm formation, and RNA maturation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YmcA COG4550
Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm ...
 6-129 2.24e-37

Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development) [Signal transduction mechanisms];


:

Pssm-ID: 443614  Cd Length: 135  Bit Score: 123.48  E-value: 2.24e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497740060   6 ESLLDEATKAHLQRLTDLLKENELIQDYQMIEEKAQNHAHLNQLIADIKIKQKEAVAFNHYGKPEAEKIAIKEAEAFTKE 85
Cdd:COG4550    1 MLYSKDEILAKAKELAEMIAETEEVERFKQAEAKINENQKVQELIAEIKALQKQAVNFQHYGKPEALKKAEAEIDALQEE 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 497740060  86 FNEHMVVTSYQDALVEANDILQHLVATVQDELKEQINQTLEDNR 129
Cdd:COG4550   81 LDEIPIVQEFKQSQVEVNDLLQLVTHTISNTVTDEIEVETGGDV 124
 
Name Accession Description Interval E-value
YmcA COG4550
Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm ...
 6-129 2.24e-37

Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development) [Signal transduction mechanisms];


Pssm-ID: 443614  Cd Length: 135  Bit Score: 123.48  E-value: 2.24e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497740060   6 ESLLDEATKAHLQRLTDLLKENELIQDYQMIEEKAQNHAHLNQLIADIKIKQKEAVAFNHYGKPEAEKIAIKEAEAFTKE 85
Cdd:COG4550    1 MLYSKDEILAKAKELAEMIAETEEVERFKQAEAKINENQKVQELIAEIKALQKQAVNFQHYGKPEALKKAEAEIDALQEE 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 497740060  86 FNEHMVVTSYQDALVEANDILQHLVATVQDELKEQINQTLEDNR 129
Cdd:COG4550   81 LDEIPIVQEFKQSQVEVNDLLQLVTHTISNTVTDEIEVETGGDV 124
Com_YlbF pfam06133
Control of competence regulator ComK, YlbF/YmcA; YlbF Is a family of short Gram-positive and ...
 18-118 2.25e-06

Control of competence regulator ComK, YlbF/YmcA; YlbF Is a family of short Gram-positive and archaeal proteins that includes both YlbF and YmcA which may interact synergistically. The family is necessary for correct biofilm formation, as null mutants of ymcA and ylbF fail to form pellicles at air-liquid interfaces and grow on solid media as smooth, undifferentiated colonies. During development, YmcA, YlbF and YaaT, family PSPI, pfam04468, interact directly with one another forming a stable ternary complex, in vitro. All three proteins are required for competence, sporulation and the formation of biofilms. The YmcA-YlbF-YaaT complex affects the phosphotransfer between Spo0F and Spo0B, thus accelerating the production of Spo0A~P. The three processes of biofilm formation, mature spore formation and competence all require the active, phosphorylated form of Spo0A, as Spo0A-P.


Pssm-ID: 428784 [Multi-domain]  Cd Length: 103  Bit Score: 43.30  E-value: 2.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497740060   18 QRLTDLLKENELIQDYQMIEEKAQNHAHLNQLIADIKIKQKEAVAFNHYGkPEAEKIAIKEAEAFTKEFNEHMVVTSYQD 97
Cdd:pfam06133   4 RELAKAIKESEEYKRYKEAEEALEADEEAQKLIKEFRKLQEELQEKQMQG-EELTEEEKQELQELYEELDQNPLVAEYLE 82

                          90       100
                  ....*....|....*....|.
gi 497740060   98 ALVEANDILQHLVATVQDELK 118
Cdd:pfam06133  83 AEQELNDLLQEVNKIIAEAIS 103
 
Name Accession Description Interval E-value
YmcA COG4550
Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm ...
 6-129 2.24e-37

Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development) [Signal transduction mechanisms];


Pssm-ID: 443614  Cd Length: 135  Bit Score: 123.48  E-value: 2.24e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497740060   6 ESLLDEATKAHLQRLTDLLKENELIQDYQMIEEKAQNHAHLNQLIADIKIKQKEAVAFNHYGKPEAEKIAIKEAEAFTKE 85
Cdd:COG4550    1 MLYSKDEILAKAKELAEMIAETEEVERFKQAEAKINENQKVQELIAEIKALQKQAVNFQHYGKPEALKKAEAEIDALQEE 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 497740060  86 FNEHMVVTSYQDALVEANDILQHLVATVQDELKEQINQTLEDNR 129
Cdd:COG4550   81 LDEIPIVQEFKQSQVEVNDLLQLVTHTISNTVTDEIEVETGGDV 124
Com_YlbF pfam06133
Control of competence regulator ComK, YlbF/YmcA; YlbF Is a family of short Gram-positive and ...
 18-118 2.25e-06

Control of competence regulator ComK, YlbF/YmcA; YlbF Is a family of short Gram-positive and archaeal proteins that includes both YlbF and YmcA which may interact synergistically. The family is necessary for correct biofilm formation, as null mutants of ymcA and ylbF fail to form pellicles at air-liquid interfaces and grow on solid media as smooth, undifferentiated colonies. During development, YmcA, YlbF and YaaT, family PSPI, pfam04468, interact directly with one another forming a stable ternary complex, in vitro. All three proteins are required for competence, sporulation and the formation of biofilms. The YmcA-YlbF-YaaT complex affects the phosphotransfer between Spo0F and Spo0B, thus accelerating the production of Spo0A~P. The three processes of biofilm formation, mature spore formation and competence all require the active, phosphorylated form of Spo0A, as Spo0A-P.


Pssm-ID: 428784 [Multi-domain]  Cd Length: 103  Bit Score: 43.30  E-value: 2.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497740060   18 QRLTDLLKENELIQDYQMIEEKAQNHAHLNQLIADIKIKQKEAVAFNHYGkPEAEKIAIKEAEAFTKEFNEHMVVTSYQD 97
Cdd:pfam06133   4 RELAKAIKESEEYKRYKEAEEALEADEEAQKLIKEFRKLQEELQEKQMQG-EELTEEEKQELQELYEELDQNPLVAEYLE 82

                          90       100
                  ....*....|....*....|.
gi 497740060   98 ALVEANDILQHLVATVQDELK 118
Cdd:pfam06133  83 AEQELNDLLQEVNKIIAEAIS 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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