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Conserved domains on  [gi|497992815|ref|WP_010306971|]
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MULTISPECIES: amino acid ABC transporter permease [Pectobacterium]

Protein Classification

amino acid ABC transporter permease( domain architecture ID 11433582)

amino acid ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which binds and transports amino acids

Gene Ontology:  GO:0140359|GO:0042626|GO:0006865
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 3-216 1.37e-76

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 229.58  E-value: 1.37e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   3 YQLNFSALFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPS 82
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  83 LGLKLTAGQAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGS 162
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 497992815 163 SVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRL 214
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 3-216 1.37e-76

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 229.58  E-value: 1.37e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   3 YQLNFSALFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPS 82
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  83 LGLKLTAGQAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGS 162
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 497992815 163 SVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRL 214
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 15-216 9.77e-37

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 128.05  E-value: 9.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   15 PELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQAAL 94
Cdd:TIGR03003  11 PTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGV 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   95 LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELT 174
Cdd:TIGR03003  91 LGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELM 170

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 497992815  175 FAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:TIGR03003 171 NQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
PRK15100 PRK15100
cystine ABC transporter permease;
15-208 1.36e-36

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 127.56  E-value: 1.36e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  15 PELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQAAL 94
Cdd:PRK15100  13 PFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  95 LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELT 174
Cdd:PRK15100  93 IGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELF 172

                        170       180       190
                 ....*....|....*....|....*....|....
gi 497992815 175 FAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQL 208
Cdd:PRK15100 173 RQAQLITSRTLEVFTMYLAASLIYWIMATVLSAL 206
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 21-205 2.11e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 74.24  E-value: 2.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  21 LWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQ---AALLAM 97
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlglPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  98 LINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELTFAA 177
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*...
gi 497992815 178 NLIQSRTFLSFEVYLATTLCYLMLSVLM 205
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 35-216 7.37e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.55  E-value: 7.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   35 GIAIGIFGAALRSGKptlLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAgQAALLAMLINLGAYSTEIIRAGIQ 114
Cdd:pfam00528   1 GIPLGIIAALRRGRR---LDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGI-LPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  115 VTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQV---SYEELTFAANLIQSRTFLSFEVY 191
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPV 156

                         170       180
                  ....*....|....*....|....*
gi 497992815  192 LATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:pfam00528 157 LAAALILLLLNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 3-216 1.37e-76

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 229.58  E-value: 1.37e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   3 YQLNFSALFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPS 82
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  83 LGLKLTAGQAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGS 162
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 497992815 163 SVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRL 214
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 5-217 6.19e-49

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 159.49  E-value: 6.19e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   5 LNFSALFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSL- 83
Cdd:COG4160    1 MDLDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFe 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  84 GLKLTA-----GQA---ALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQC 155
Cdd:COG4160   81 WVRESWlwpllRDPwfcALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEV 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 497992815 156 IIVMLGSSVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRFL 217
Cdd:COG4160  161 ILMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLL 222
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 15-216 9.77e-37

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 128.05  E-value: 9.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   15 PELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQAAL 94
Cdd:TIGR03003  11 PTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGV 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   95 LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELT 174
Cdd:TIGR03003  91 LGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELM 170

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 497992815  175 FAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:TIGR03003 171 NQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
PRK15100 PRK15100
cystine ABC transporter permease;
15-208 1.36e-36

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 127.56  E-value: 1.36e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  15 PELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQAAL 94
Cdd:PRK15100  13 PFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  95 LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELT 174
Cdd:PRK15100  93 IGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELF 172

                        170       180       190
                 ....*....|....*....|....*....|....
gi 497992815 175 FAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQL 208
Cdd:PRK15100 173 RQAQLITSRTLEVFTMYLAASLIYWIMATVLSAL 206
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 4-215 4.02e-35

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 124.01  E-value: 4.02e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   4 QLNFSALFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSL 83
Cdd:PRK09494   2 QFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  84 --GLKLTAGQAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLG 161
Cdd:PRK09494  82 fnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKD 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 497992815 162 SSVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRR 215
Cdd:PRK09494 162 TSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERR 215
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 15-215 8.67e-33

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 117.64  E-value: 8.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   15 PELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQAAL 94
Cdd:TIGR03004   5 PLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVTTGV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   95 LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELT 174
Cdd:TIGR03004  85 MVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 497992815  175 FAANLIQSRTFLSFEVYLATTLCYLMlsvlMRQLLLLAGRR 215
Cdd:TIGR03004 165 FAAQSIRNLTLDTLSIFAITLLCYFV----MALIIMLIMRV 201
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 13-111 7.88e-22

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 85.66  E-value: 7.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   13 FWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQA 92
Cdd:TIGR01726   1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTA 80

                          90
                  ....*....|....*....
gi 497992815   93 ALLAMLINLGAYSTEIIRA 111
Cdd:TIGR01726  81 AVIALTLFYGAYLAEIFRG 99
artM PRK11122
arginine ABC transporter permease ArtM;
10-208 2.60e-20

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 85.40  E-value: 2.60e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  10 LFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFG---LPSL--- 83
Cdd:PRK11122   1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGpgqFPWLqey 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  84 ----GLKLTAGQAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTfLRVILPPALQRIYPALVSQCIIVM 159
Cdd:PRK11122  81 pwlwHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQT-LRILLPYAFKRALSSYSNEVVLVF 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 497992815 160 LGSSVVSQVSYEELTFAANLIQSRTFlSFEVYLATTLCYL----MLSVLMRQL 208
Cdd:PRK11122 160 KSTSLAYTITLMDVMGYSQLLYGRTY-DVMVFGAAGIIYLvvngLLTLLMRLI 211
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
3-203 2.09e-19

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 82.96  E-value: 2.09e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   3 YQLNFSALFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPS 82
Cdd:PRK15107   2 YEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  83 -----LGLKLTAG---QAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQ 154
Cdd:PRK15107  82 flqnvLGLSPKTDirlISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQ 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 497992815 155 CIIVMLGSSVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSV 203
Cdd:PRK15107 162 GIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISL 210
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
17-216 9.15e-19

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 81.65  E-value: 9.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  17 LLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAG------ 90
Cdd:PRK11123   7 LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLLLTLSDGftlnlg 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  91 ------------------QAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALV 152
Cdd:PRK11123  87 fvqipvqmdienfevspfLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 497992815 153 SQCIIVMLGSSVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:PRK11123 167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRA 230
PRK15069 PRK15069
histidine ABC transporter permease HisM;
18-217 1.91e-18

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 80.48  E-value: 1.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  18 LEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLglKLTAGQA----- 92
Cdd:PRK15069  20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSL--EIVRGTDlldaf 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  93 -------ALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVV 165
Cdd:PRK15069  98 frsglncTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLA 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 497992815 166 SQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRFL 217
Cdd:PRK15069 178 FTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERRWL 229
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 21-205 2.11e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 74.24  E-value: 2.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  21 LWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAGQ---AALLAM 97
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlglPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  98 LINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELTFAA 177
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*...
gi 497992815 178 NLIQSRTFLSFEVYLATTLCYLMLSVLM 205
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
10-216 9.28e-16

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 73.29  E-value: 9.28e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  10 LFPFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTPFVVQLFFIVFGLP----SLGL 85
Cdd:PRK15135   2 LYGFSGVILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQialnSVTE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  86 KLTAGQA---ALLAMLINLG----AYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIV 158
Cdd:PRK15135  82 ALGVGQIdidPMVAGIITLGfiygAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVI 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 497992815 159 MLGSSVVSQVSYEELTFAANLIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:PRK15135 162 LKATALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERRY 219
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 14-204 5.31e-15

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 72.87  E-value: 5.31e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  14 WPELLEGLWVTIELTVMATLGGIAIGIFGAAL--RSGKPTllsRLWGVYVELIRNTPFVVQLFF---IVFGLPSL----- 83
Cdd:COG4597  179 APVFEPGFGWVLAALLAAIVAAFVLRRWARRRqeATGQRF---PVWWISLALLVGLPLLAFLLLgapLSLDYPELkgfnf 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  84 --GLKLTAGQAAL-LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVML 160
Cdd:COG4597  256 rgGLTLSPEFVALlLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLTK 335

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 497992815 161 GSSVVSQVSYEELTF-AANLIQSRTFLSFEVYLATTLCYLMLSVL 204
Cdd:COG4597  336 NSSLAVAIGYPDLVSvFAGTTLNQTGQAIEIIAITMAVYLTISLL 380
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 35-216 7.37e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.55  E-value: 7.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   35 GIAIGIFGAALRSGKptlLSRLWGVYVELIRNTPFVVQLFFIVFGLPSLGLKLTAgQAALLAMLINLGAYSTEIIRAGIQ 114
Cdd:pfam00528   1 GIPLGIIAALRRGRR---LDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGI-LPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  115 VTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALVSQCIIVMLGSSVVSQV---SYEELTFAANLIQSRTFLSFEVY 191
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPV 156

                         170       180
                  ....*....|....*....|....*
gi 497992815  192 LATTLCYLMLSVLMRQLLLLAGRRF 216
Cdd:pfam00528 157 LAAALILLLLNLLVDILQRLLDPRV 181
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 14-217 1.94e-09

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 55.92  E-value: 1.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  14 WPELLEGLWVTIELTVMATLGGIAIGIFGAALrSGKPTLLSRLWGVYVELIRNTPFV--VQLFFIVFGLPSLGLKLTAGQ 91
Cdd:COG0600   56 SGELWEHLLASLLRVLLGFALAALLGVPLGLL-LGLSRLLRRLLDPLLVFLRPIPPLalAPLLILWFGIGEASKIFVIFL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  92 AALLAMLINlgaysteiIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALQRIYPALvsqciIVMLGSSVVSQVSYE 171
Cdd:COG0600  135 GAFFPILLN--------TAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGL-----RIALGLAWIGLVVAE 201

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 497992815 172 elTFAAN------LIQSRTFLSFEVYLATTLCYLMLSVLMRQLLLLAGRRFL 217
Cdd:COG0600  202 --LLGASsglgylILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLL 251
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-141 1.55e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 45.15  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  13 FWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGVYVELIRNTP-FVVQLFFIVFGLPSLGLKLTAGQ 91
Cdd:COG1178  332 LDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPgIVLGLGLLLLFNRPLPLLLYGTL 411

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 497992815  92 AAL-LAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILP 141
Cdd:COG1178  412 AILvLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLP 462
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
6-160 1.86e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 44.77  E-value: 1.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   6 NFSALFpFWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGV----------------YVELIRNTPF 69
Cdd:COG1178   42 NFWALL-SDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWllllplalppyvvalaWIALFGPNGL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  70 VVQLFFIVFGLPSLGLKLTAGqaALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALqriyP 149
Cdd:COG1178  121 LNTLLRALFGLEPPDIYGLGG--IILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLR----P 194

                        170
                 ....*....|.
gi 497992815 150 ALVSQCIIVML 160
Cdd:COG1178  195 AIAAGALLVFL 205
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 7-156 1.76e-04

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 41.22  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815   7 FSALFP----FWPELLEGLWVTIELTVMATLGGIAIGIFGAALRSGKPTLLSRLWGV---YVELIRNTPFVV--QLFFIV 77
Cdd:COG3639   35 LSRFFPpdwsYLPDLLSALLETLAIALLGTLLGAVLALPLAFLAARNLAPNPWVRLLarrLLNVLRAIPELVwaLIFVAA 114

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 497992815  78 FGLPSLglkltagqAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPpalqRIYPALVSQCI 156
Cdd:COG3639  115 VGLGPF--------AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLP----QVLPQFLSYTL 181
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
17-160 4.15e-04

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 40.10  E-value: 4.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  17 LLEGLWVTIELTVMATLGGIAIGI-FGAALRSGKP------TLLSRLWGVYVELIRNTPFVVQLFFIV-----FGLPSLG 84
Cdd:PRK10782   9 LVRGVWETLAMTFVSGFFGFVIGLpVGVLLYVTRPgqiianAKLYRTLSALVNIFRSIPFIILLVWMIpftrvIVGTSIG 88

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 497992815  85 LkltagQAALLAMLINLGAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALqriyPALVSQCIIVML 160
Cdd:PRK10782  89 L-----QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEAL----PGLVNAATITLI 155
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 15-162 2.99e-03

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 37.78  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815  15 PELLEGLWVTIELTVMATLGGIAIGIFGA-ALRSGKPTllsrlWGVYVELIRNTPFVVQ---------LFFIVFGLPSLG 84
Cdd:COG1177   57 PRLLDALLNSLLIALLSTLLATVLGTPAAlALARYRFR-----GRRLLLALLLLPLVVPgivlgvallLLFSALGLSGGL 131

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 497992815  85 LKLTAGQAALLAmlinlgAYSTEIIRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPpalqRIYPALVSQCIIVMLGS 162
Cdd:COG1177  132 WGLILAHVVFTL------PFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP----LIAPGILAGALLAFTLS 199
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 122-153 5.47e-03

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 37.04  E-value: 5.47e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 497992815 122 EAARVLGLTRMQTFLRVILPPALqriyPALVS 153
Cdd:COG0555  168 EAAATLGASRWQTFRRVILPLLL----PALLT 195
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 109-218 8.40e-03

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 36.28  E-value: 8.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497992815 109 IRAGIQVTPKGQWEAARVLGLTRMQTFLRVILPPALqriyPALVSQCIIV---MLGSSVVSQ-VSYEELTFAANLIQSRT 184
Cdd:COG1176  173 LYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSL----PGIIAGSLLVfipALGAFVTPAlLGGGKVLMIGNLIYQQF 248

                         90       100       110
                 ....*....|....*....|....*....|....
gi 497992815 185 FLSFEVYLATTLCYLMLSVLMrqLLLLAGRRFLG 218
Cdd:COG1176  249 LSALNWPLAAALAVVLLLIVL--LVLLLYLRLLR 280
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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