|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
96-445 |
9.19e-149 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 430.73 E-value: 9.19e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 96 GAIFHYRKPVDMQILEDTLadfsqyflqkQEEGRKVSTSDLDQFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAG 175
Cdd:COG3829 104 GAVETFRDITELKRLERKL----------REEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 176 KELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRT-HQGVFRQAEGGTLFLDEITEMPLEHQVKL 254
Cdd:COG3829 174 KELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 255 LRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHRNA- 333
Cdd:COG3829 254 LRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKk 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 334 NETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILAD-ETIKDEHLIFDTPPLETGTTVEDMVPAGVSLEKIEKAAI 412
Cdd:COG3829 334 YGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEgDVITPEHLPEYLLEEAEAASAAEEGSLKEALEEVEKELI 413
|
330 340 350
....*....|....*....|....*....|...
gi 498117807 413 INTLEENEGNKKETAQDLGISIKTLYNKLDKYQ 445
Cdd:COG3829 414 EEALEKTGGNKSKAAKALGISRSTLYRKLKKYG 446
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
142-309 |
3.80e-101 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 298.93 E-value: 3.80e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 142 LVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTG 221
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 222 ANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYF 301
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 498117807 302 RLAHFPIH 309
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
122-432 |
2.79e-99 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 306.33 E-value: 2.79e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 122 LQKQEEGRKVSTSDLDQF----GMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAI 197
Cdd:PRK05022 165 LESQAELPQDVAEFLRQEalkeGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 198 NCGAIsPE-LVDSELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANT 276
Cdd:PRK05022 245 NCAAL-PEsLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 277 RVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIahrnaNETTAK------TIFTSALQKIS 350
Cdd:PRK05022 324 RVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFL-----EQNRARlglrslRLSPAAQAALL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 351 AHAWPGNVRELKHCIERAFILA-------DETIKDEHLIFDTPPLETGTTVEDM--VPAGVSL----EKIEKAAIINTLE 417
Cdd:PRK05022 399 AYDWPGNVRELEHVISRAALLArargagrIVTLEAQHLDLPAEVALPPPEAAAApaAVVSQNLreatEAFQRQLIRQALA 478
|
330
....*....|....*
gi 498117807 418 ENEGNKKETAQDLGI 432
Cdd:PRK05022 479 QHQGNWAAAARALEL 493
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
78-445 |
1.65e-96 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 297.05 E-value: 1.65e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 78 IIISTGTPNK-NLDMMMNHGAIFHYRKPVDMQILEDTLAD-FSQYFLQkQEEGRKVSTSDLDQFGMLVGSSKPMHKLYRT 155
Cdd:TIGR02915 76 VIVITGNDDReNAVKAIGLGAYDFYQKPIDPDVLKLIVDRaFHLYTLE-TENRRLQSALGGTALRGLITSSPGMQKICRT 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 156 LRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEG 235
Cdd:TIGR02915 155 IEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHG 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 236 GTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRE 315
Cdd:TIGR02915 235 GTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 316 RGDDIVGLAKHFIaHRNANETTAKTI-FTS-ALQKISAHAWPGNVRELKHCIERAFILADET-IKDEHLIFDTPPletGT 392
Cdd:TIGR02915 315 RDGDAVLLANAFL-ERFARELKRKTKgFTDdALRALEAHAWPGNVRELENKVKRAVIMAEGNqITAEDLGLDARE---RA 390
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 498117807 393 TVEDMVPAGVSLEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKYQ 445
Cdd:TIGR02915 391 ETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHG 443
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
149-312 |
6.74e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.14 E-value: 6.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 149 MHKLYRTLRRVAKTDT--NVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEkgaftgANRTH 226
Cdd:cd00009 3 QEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 227 QGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVgsnatSIANTRVIAATNRDpqvaiEEQFLREDLYFRLAHf 306
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRP-----LLGDLDRALYDRLDI- 145
|
....*.
gi 498117807 307 PIHVPP 312
Cdd:cd00009 146 RIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
165-286 |
2.41e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 61.62 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 165 NVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVD--SELFGHEKGAFTGANRTHQGVFRQAEG---GTLF 239
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 498117807 240 LDEITEMPLEHQVKLLRVLETGEyrpVGSNATSIANTRVIAATNRDP 286
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTNDEK 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
96-445 |
9.19e-149 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 430.73 E-value: 9.19e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 96 GAIFHYRKPVDMQILEDTLadfsqyflqkQEEGRKVSTSDLDQFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAG 175
Cdd:COG3829 104 GAVETFRDITELKRLERKL----------REEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 176 KELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRT-HQGVFRQAEGGTLFLDEITEMPLEHQVKL 254
Cdd:COG3829 174 KELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 255 LRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHRNA- 333
Cdd:COG3829 254 LRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKk 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 334 NETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILAD-ETIKDEHLIFDTPPLETGTTVEDMVPAGVSLEKIEKAAI 412
Cdd:COG3829 334 YGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEgDVITPEHLPEYLLEEAEAASAAEEGSLKEALEEVEKELI 413
|
330 340 350
....*....|....*....|....*....|...
gi 498117807 413 INTLEENEGNKKETAQDLGISIKTLYNKLDKYQ 445
Cdd:COG3829 414 EEALEKTGGNKSKAAKALGISRSTLYRKLKKYG 446
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
74-444 |
1.69e-141 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 411.28 E-value: 1.69e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 74 EMDLIIISTGTPNKNLDMMMNHGAIFHYRKPVDMQILEDTLADFsqyfLQKQEEGRKVSTSDldqfgMLVGSSKPMHKLY 153
Cdd:COG2204 74 DLPVILLTGYGDVETAVEAIKAGAFDYLTKPFDLEELLAAVERA----LERRRLRRENAEDS-----GLIGRSPAMQEVR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 154 RTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQA 233
Cdd:COG2204 145 RLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELA 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 234 EGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPL 313
Cdd:COG2204 225 DGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 314 RERGDDIVGLAKHFIAHRNANETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILAD-ETIKDEHLifdtppletgt 392
Cdd:COG2204 305 RERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADgEVITAEDL----------- 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 498117807 393 tvedmvpaGVSLEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKY 444
Cdd:COG2204 374 --------PEALEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKY 417
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
137-445 |
7.79e-116 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 352.67 E-value: 7.79e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 137 DQFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEK 216
Cdd:COG3284 318 AALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEP 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 217 GAFTGANRT-HQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFL 295
Cdd:COG3284 398 GAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRF 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 296 REDLYFRLAHFPIHVPPLRERgDDIVGLAKHFIAhRNANETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILAD-E 374
Cdd:COG3284 478 REDLYYRLNGLTLTLPPLRER-EDLPALIEHLLR-ELAAGRGPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADgG 555
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 498117807 375 TIKDEHLifdtPP---LETGTTVEDMVPAGVSLEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKYQ 445
Cdd:COG3284 556 VITVEDL----PDelrAELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
142-309 |
3.80e-101 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 298.93 E-value: 3.80e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 142 LVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTG 221
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 222 ANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYF 301
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 498117807 302 RLAHFPIH 309
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
122-432 |
2.79e-99 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 306.33 E-value: 2.79e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 122 LQKQEEGRKVSTSDLDQF----GMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAI 197
Cdd:PRK05022 165 LESQAELPQDVAEFLRQEalkeGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 198 NCGAIsPE-LVDSELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANT 276
Cdd:PRK05022 245 NCAAL-PEsLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 277 RVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIahrnaNETTAK------TIFTSALQKIS 350
Cdd:PRK05022 324 RVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFL-----EQNRARlglrslRLSPAAQAALL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 351 AHAWPGNVRELKHCIERAFILA-------DETIKDEHLIFDTPPLETGTTVEDM--VPAGVSL----EKIEKAAIINTLE 417
Cdd:PRK05022 399 AYDWPGNVRELEHVISRAALLArargagrIVTLEAQHLDLPAEVALPPPEAAAApaAVVSQNLreatEAFQRQLIRQALA 478
|
330
....*....|....*
gi 498117807 418 ENEGNKKETAQDLGI 432
Cdd:PRK05022 479 QHQGNWAAAARALEL 493
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
78-445 |
1.65e-96 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 297.05 E-value: 1.65e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 78 IIISTGTPNK-NLDMMMNHGAIFHYRKPVDMQILEDTLAD-FSQYFLQkQEEGRKVSTSDLDQFGMLVGSSKPMHKLYRT 155
Cdd:TIGR02915 76 VIVITGNDDReNAVKAIGLGAYDFYQKPIDPDVLKLIVDRaFHLYTLE-TENRRLQSALGGTALRGLITSSPGMQKICRT 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 156 LRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEG 235
Cdd:TIGR02915 155 IEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHG 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 236 GTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRE 315
Cdd:TIGR02915 235 GTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 316 RGDDIVGLAKHFIaHRNANETTAKTI-FTS-ALQKISAHAWPGNVRELKHCIERAFILADET-IKDEHLIFDTPPletGT 392
Cdd:TIGR02915 315 RDGDAVLLANAFL-ERFARELKRKTKgFTDdALRALEAHAWPGNVRELENKVKRAVIMAEGNqITAEDLGLDARE---RA 390
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 498117807 393 TVEDMVPAGVSLEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKYQ 445
Cdd:TIGR02915 391 ETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHG 443
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
138-444 |
5.90e-90 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 280.58 E-value: 5.90e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 138 QFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKG 217
Cdd:PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 218 AFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLRE 297
Cdd:PRK11361 221 AFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 298 DLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHRNA-NETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILAdeti 376
Cdd:PRK11361 301 DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSeNQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---- 376
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 498117807 377 kDEHLIF--DTP-----PLETGTTVEDMVPAGVSLE----KIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKY 444
Cdd:PRK11361 377 -SGPIIFseDLPpqirqPVCNAGEVKTAPVGERNLKeeikRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEY 454
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
96-441 |
4.94e-89 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 278.55 E-value: 4.94e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 96 GAIFHYRKPVDMqileDTLADFSQYFLQKQEEGRKVSTSDLDQFGM--LVGSSKPMHKLYRTLRRVAKTDTNVLIVGESG 173
Cdd:TIGR01818 92 GAFEYLPKPFDL----DEAVTLVERALAHAQEQVALPADAGEAEDSaeLIGEAPAMQEVFRAIGRLSRSDITVLINGESG 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 174 AGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVK 253
Cdd:TIGR01818 168 TGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTR 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 254 LLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAhRNA 333
Cdd:TIGR01818 248 LLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLA-LAA 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 334 NE--TTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILADEtikDEHLIFDTPP--LETGTTVEDMVPAGVS------ 403
Cdd:TIGR01818 327 REldVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG---DEVLVSDLPAelALTGRPASAPDSDGQDswdeal 403
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 498117807 404 -------------------LEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKL 441
Cdd:TIGR01818 404 eawakqalsrgeqglldraLPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKL 460
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
108-385 |
7.56e-89 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 280.06 E-value: 7.56e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 108 QILEDTLADFSQYFLQKQEEGRKVSTSDLDQFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLAS 187
Cdd:TIGR01817 164 QRRERLIAEAVQLSKQLRDKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 188 DRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVG 267
Cdd:TIGR01817 244 PRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVG 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 268 SNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHRNANETTAKTIFTSALQ 347
Cdd:TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403
|
250 260 270
....*....|....*....|....*....|....*....
gi 498117807 348 KISAHAWPGNVRELKHCIERAFILADE-TIKDEHLIFDT 385
Cdd:TIGR01817 404 VLMSCKWPGNVRELENCLERTATLSRSgTITRSDFSCQS 442
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
96-443 |
3.05e-87 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 273.06 E-value: 3.05e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 96 GAIFHYRKPVDMQILEDTLadfSQYFLQKQEEGRKVSTSDLDQFGMlVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAG 175
Cdd:PRK10365 99 GALDYLIKPLDFDNLQATL---EKALAHTHSIDAETPAVTASQFGM-VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 176 KELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLL 255
Cdd:PRK10365 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLL 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 256 RVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFI---AHRn 332
Cdd:PRK10365 255 RAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLqrfAER- 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 333 aNETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFI-LADETIKDEHL---IFDTP-PLETGTTVEDMVpagvsleKI 407
Cdd:PRK10365 334 -NRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVlLTGEYISERELplaIASTPiPLGQSQDIQPLV-------EV 405
|
330 340 350
....*....|....*....|....*....|....*.
gi 498117807 408 EKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDK 443
Cdd:PRK10365 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
129-444 |
1.56e-81 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 260.51 E-value: 1.56e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 129 RKVSTSDLDQFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVD 208
Cdd:COG3283 193 QALQVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 209 SELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQV 288
Cdd:COG3283 273 SELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 289 AIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAhRNANET--TAKTIFTSALQKISAHAWPGNVRELKHCIE 366
Cdd:COG3283 353 LVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVA-RFSQQLgrPRPRLSPDLVDFLQSYPWPGNVRQLENALY 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 367 RAFILAD-ETIKDEHLifDTPPLETGTTVEDMVPAGvSLEKIEK---AAIINTLEENEGNKKETAQDLGISIKTLYNKLD 442
Cdd:COG3283 432 RAVSLLEgDELTPEDL--QLPEYAASAGLLDDLLEG-SLDEIVKrfeRSLLRRLYPSYPSTRKLAKRLGVSHTAIANKLR 508
|
..
gi 498117807 443 KY 444
Cdd:COG3283 509 EY 510
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
138-443 |
4.71e-78 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 251.70 E-value: 4.71e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 138 QFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKG 217
Cdd:TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEG 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 218 AFTGANR-THQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLR 296
Cdd:TIGR02329 290 AFTGARRgGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFR 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 297 EDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHrnANETTAKTIFTSALQKISA-------HAWPGNVRELKHCIER-A 368
Cdd:TIGR02329 370 RDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ--AAAALRLPDSEAAAQVLAGvadplqrYPWPGNVRELRNLVERlA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 498117807 369 FILADE---TIKDEHLIFDTPPL-ETGTTVEDMVPAGVSLEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDK 443
Cdd:TIGR02329 448 LELSAMpagALTPDVLRALAPELaEASGKGKTSALSLRERSRVEALAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
142-441 |
8.35e-76 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 246.17 E-value: 8.35e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 142 LVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIH--------LASDRKNQPFIAINCGAISPELVDSELFG 213
Cdd:PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 214 HEKGAFTGANRT-HQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEE 292
Cdd:PRK15424 301 YEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 293 QFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHRNANetTAKTIFTSALQKISAHA-------WPGNVRELKHCI 365
Cdd:PRK15424 381 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAA--LSAPFSAALRQGLQQCEtlllhydWPGNVRELRNLM 458
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498117807 366 ERAFILADetiKDEHLIFDTPPLETGTTVEDMVPAGVSLEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKL 441
Cdd:PRK15424 459 ERLALFLS---VEPTPDLTPQFLQLLLPELARESAKTPAPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRL 531
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
84-441 |
8.46e-75 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 241.70 E-value: 8.46e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 84 TPNKNLDMMMN---HGAIFHYRKPVDmqiLEDTLA----DFSQYFLQKQEEGRKVSTSDLDqfgmLVGSSKPMHKLYRTL 156
Cdd:PRK10923 82 TAHSDLDAAVSayqQGAFDYLPKPFD---IDEAVAlverAISHYQEQQQPRNIQVNGPTTD----IIGEAPAMQDVFRII 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 157 RRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGG 236
Cdd:PRK10923 155 GRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 237 TLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRER 316
Cdd:PRK10923 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRER 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 317 GDDIVGLAKHFIaHRNANE--TTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILAdetIKDEHLIFDTPPLETGTTV 394
Cdd:PRK10923 315 REDIPRLARHFL-QVAARElgVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGELFESTV 390
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498117807 395 EDMVPAGVS--------------------------LEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKL 441
Cdd:PRK10923 391 PESTSQMQPdswatllaqwadralrsghqnllseaQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
138-443 |
8.04e-74 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 244.74 E-value: 8.04e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 138 QFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKG 217
Cdd:PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 218 AFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLRE 297
Cdd:PRK15429 454 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 298 DLYFRLAHFPIHVPPLRERGDDIVGLAKHF---IAH---RNANETTAKTiftsaLQKISAHAWPGNVRELKHCIERAFIL 371
Cdd:PRK15429 534 DLYYRLNVFPIHLPPLRERPEDIPLLVKAFtfkIARrmgRNIDSIPAET-----LRTLSNMEWPGNVRELENVIERAVLL 608
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498117807 372 ADETIkdehLIFDTPPLETGTTVEDMVPAGVSLE-KIEKAAIINTLEENEG---NKKETAQDLGISIKTLYNKLDK 443
Cdd:PRK15429 609 TRGNV----LQLSLPDITLPEPETPPAATVVAQEgEDEYQLIVRVLKETNGvvaGPKGAAQRLGLKRTTLLSRMKR 680
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
142-382 |
9.46e-74 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 238.20 E-value: 9.46e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 142 LVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTG 221
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 222 ANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYF 301
Cdd:PRK15115 216 AVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 302 RLAHFPIHVPPLRERGDDIVGLAKHFI---AHRnaNETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILADETIKD 378
Cdd:PRK15115 296 RLNVVSLKIPALAERTEDIPLLANHLLrqaAER--HKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVIS 373
|
....
gi 498117807 379 EHLI 382
Cdd:PRK15115 374 DALV 377
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
168-444 |
3.03e-70 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 225.88 E-value: 3.03e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 168 IVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSelfghekgaftganrthqgvfrqaeggtlfldeitemp 247
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 248 lehqvkllrvLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHF 327
Cdd:COG3604 162 ----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHF 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 328 IAHRNA-NETTAKTIFTSALQKISAHAWPGNVRELKHCIERAFILA-DETIKDEHLIFDTPPletgttvedmvpagvSLE 405
Cdd:COG3604 232 LEKFSRrLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAeGGVLDADDLAPGSRE---------------ALE 296
|
250 260 270
....*....|....*....|....*....|....*....
gi 498117807 406 KIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKY 444
Cdd:COG3604 297 EVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKL 335
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
158-445 |
4.33e-70 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 224.93 E-value: 4.33e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 158 RVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGGT 237
Cdd:PRK11608 24 RLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 238 LFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRD-PQVAIEEQFlREDLYFRLAHFPIHVPPLRER 316
Cdd:PRK11608 104 LFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADlPAMVAEGKF-RADLLDRLAFDVVQLPPLRER 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 317 GDDIVGLAKHFiAHRNANETTAKTI--FT-SALQKISAHAWPGNVRELKHCIERA-FILADETIKDEHLIFD-----TPP 387
Cdd:PRK11608 183 QSDIMLMAEHF-AIQMCRELGLPLFpgFTeRARETLLNYRWPGNIRELKNVVERSvYRHGTSEYPLDNIIIDpfkrrPAE 261
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498117807 388 LETGTTVEDMVPA-GVSLEKI----EKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDKYQ 445
Cdd:PRK11608 262 EAIAVSETTSLPTlPLDLREWqhqqEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQ 324
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
129-444 |
4.63e-63 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 212.24 E-value: 4.63e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 129 RKVSTSDLDQFGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVD 208
Cdd:PRK10820 193 QNLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 209 SELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQV 288
Cdd:PRK10820 273 SELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 289 AIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAhRNANET-TAKTIFTSAL-QKISAHAWPGNVRELKHCIE 366
Cdd:PRK10820 353 LVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVA-RFADEQgVPRPKLAADLnTVLTRYGWPGNVRQLKNAIY 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 367 RAFI-LADETIKDEHLifDTPPLETGTTVEDMVPAGvSLEKIEK---AAIINTLEENEGNKKETAQDLGISIKTLYNKLD 442
Cdd:PRK10820 432 RALTqLEGYELRPQDI--LLPDYDAAVAVGEDAMEG-SLDEITSrfeRSVLTRLYRNYPSTRKLAKRLGVSHTAIANKLR 508
|
..
gi 498117807 443 KY 444
Cdd:PRK10820 509 EY 510
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
121-445 |
1.12e-60 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 208.76 E-value: 1.12e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 121 FLQKQEEGRKVSTSDLDQ----FGMLVGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIA 196
Cdd:PRK11388 302 LLHPVEQMRQLMTSQLGKvshtFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 197 INCGAISPELVDSELFGhekGAFTGANRTHQGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSIANT 276
Cdd:PRK11388 382 VNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDV 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 277 RVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDIVGLAKHFIAHRNANETTAKTIFTSALQKISAHAWPG 356
Cdd:PRK11388 459 RVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPG 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 357 NVRELKHCIERAFILADET---IKD--EHLIFDTPPLETGTTvedMVPAGVSLEKIEKAAIINTLEENEGNKKETAQDLG 431
Cdd:PRK11388 539 NDFELRSVIENLALSSDNGrirLSDlpEHLFTEQATDDVSAT---RLSTSLSLAELEKEAIINAAQVCGGRIQEMAALLG 615
|
330
....*....|....
gi 498117807 432 ISIKTLYNKLDKYQ 445
Cdd:PRK11388 616 IGRTTLWRKMKQHG 629
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
166-373 |
4.42e-35 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 136.50 E-value: 4.42e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 166 VLIVGESGAGKELVAQTIHLASDRKNQ---PFIAINCGAISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGGTLFLDE 242
Cdd:COG4650 211 ILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLDE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 243 ITEMPLEHQVKLLRVLETGEYRPVGSNATSIANTRVIAATNRDPQVAIEEQFLREDLYFRLAHFPIHVPPLRERGDDI-- 320
Cdd:COG4650 291 IGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIep 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498117807 321 ---VGLAKHfiahrnANETTAKTIF-TSALQKISAHA------WPGNVRELKHCIERAFILAD 373
Cdd:COG4650 371 nldYELARF------AREQGRRVRFnKEARARYLAFAtspealWSGNFRDLNASVTRMATLAE 427
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
165-362 |
5.50e-31 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 126.38 E-value: 5.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 165 NVLIVGESGAGKELVAQTIH---LASDR--KNQPFIAINCG--AISPELVDSELFGHEKGAFTGANRTHQGVFRQAEGGT 237
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYeyaIEIGVlpEDAPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 238 LFLDEITEMPLEHQVKLLRVLETGEYRPVGSNATSI-ANTRVIAATNRDPQVAIEEQFLRedlyfRLahfP--IHVPPLR 314
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEKTRkANVRIIFATTEDPESSLLKTFLR-----RI---PmvIKLPSLE 283
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 498117807 315 ERG-DDIVGLAKHFI---AHRnanetTAKTIFTS--ALQKISAHAWPGNVRELK 362
Cdd:COG1221 284 ERSlEERLELIKHFFkeeAKR-----LNKPIKVSkeVLKALLLYDCPGNIGQLK 332
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
149-312 |
6.74e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.14 E-value: 6.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 149 MHKLYRTLRRVAKTDT--NVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELFGHEkgaftgANRTH 226
Cdd:cd00009 3 QEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 227 QGVFRQAEGGTLFLDEITEMPLEHQVKLLRVLETGEYRPVgsnatSIANTRVIAATNRDpqvaiEEQFLREDLYFRLAHf 306
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRP-----LLGDLDRALYDRLDI- 145
|
....*.
gi 498117807 307 PIHVPP 312
Cdd:cd00009 146 RIVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
143-313 |
5.17e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 85.86 E-value: 5.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 143 VGSSKPMHKLYRTLRRVAKTDTNVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDselfghekgaftga 222
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLE-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 223 nrthqgvfrQAEGGTLFLDEITEMPLEHQVKLLRVLETGEyrpvGSNAtsiantRVIAATNRD-PQVAIEEQFLREdLYF 301
Cdd:pfam14532 67 ---------QAKGGTLYLKDIADLSKALQKGLLLLLAKAE----GYRV------RLVCTSSKDlPQLAAAGLFDEQ-LYF 126
|
170
....*....|..
gi 498117807 302 RLAHFPIHVPPL 313
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
165-286 |
2.41e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 61.62 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 165 NVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVD--SELFGHEKGAFTGANRTHQGVFRQAEG---GTLF 239
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 498117807 240 LDEITEMPLEHQVKLLRVLETGEyrpVGSNATSIANTRVIAATNRDP 286
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTNDEK 127
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
404-443 |
1.63e-10 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 55.86 E-value: 1.63e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 498117807 404 LEKIEKAAIINTLEENEGNKKETAQDLGISIKTLYNKLDK 443
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
165-303 |
2.37e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 55.38 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 165 NVLIVGESGAGKELVAQtiHLASDRKNQPFIAINCGAISPElvdSELFGHEKGAFTGANRTHQGVFRQA-EGGTLFLDEI 243
Cdd:pfam07728 1 GVLLVGPPGTGKTELAE--RLAAALSNRPVFYVQLTRDTTE---EDLFGRRNIDPGGASWVDGPLVRAArEGEIAVLDEI 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498117807 244 TEMPLEHQVKLLRVLETGEYRPV-GSNATSIANT--RVIAATNRDPQvaiEEQFLREDLYFRL 303
Cdd:pfam07728 76 NRANPDVLNSLLSLLDERRLLLPdGGELVKAAPDgfRLIATMNPLDR---GLNELSPALRSRF 135
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
161-334 |
5.88e-04 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 41.56 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 161 KTDTNVLIVGESGAGKELVAQTIHLASDRKNqpFIAINcGAISPELVDSelfgHEKGAFTGANRTHQGVFRQAEGGTLFL 240
Cdd:cd17706 39 RGDIHILLVGDPGTAKSQILKYVLKIAPRGV--YTSGK-GSSGAGLTAA----VVRDSETGEWYLEAGALVLADGGVCCI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498117807 241 DEITEMPLEHQVKLLRVLE--TGEYRPVGSNATSIANTRVIAATN---------RDP--QVAIEEQFL-REDLYfrlahF 306
Cdd:cd17706 112 DEFDKMKELDRTALHEAMEqqTISIAKAGIVTTLNARCSILAAANpkggrynpkLSPieNINLPSPLLsRFDLI-----F 186
|
170 180
....*....|....*....|....*...
gi 498117807 307 PIHVPPLRERGDDIvglAKHFIAHRNAN 334
Cdd:cd17706 187 VIRDDPDEERDEEL---AEHIIDLHRGS 211
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
142-212 |
2.48e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 38.64 E-value: 2.48e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498117807 142 LVGSSKPMHKLYRTLRRVAKTDT-NVLIVGESGAGKELVAQTIHLASDRKNQPFIAINCGAISPELVDSELF 212
Cdd:pfam13191 2 LVGREEELEQLLDALDRVRSGRPpSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEAL 73
|
|
| CdaR |
COG3835 |
Sugar diacid utilization regulator CdaR [Transcription, Signal transduction mechanisms]; |
413-446 |
3.12e-03 |
|
Sugar diacid utilization regulator CdaR [Transcription, Signal transduction mechanisms];
Pssm-ID: 443046 [Multi-domain] Cd Length: 301 Bit Score: 39.24 E-value: 3.12e-03
10 20 30
....*....|....*....|....*....|....*..
gi 498117807 413 INTLE---ENEGNKKETAQDLGISIKTLYNKLDKYQE 446
Cdd:COG3835 240 LETLRayfENNGNISETAEALFIHRNTLRYRLKKIEE 276
|
|
| |
