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Conserved domains on  [gi|498239904|ref|WP_010554060|]
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MULTISPECIES: c-type cytochrome [Pseudoalteromonas]

Protein Classification

cytochrome c family protein( domain architecture ID 229496)

cytochrome c family protein is a ubiquitous heme protein in mitochondria and bacteria, possessing a CXXCH motif with covalently attached heme; in both prokaryotes and eukaryotes it functions to transfer electrons from reduced substrates to physiological partners, thereby driving the pathway leading to oxidative phosphorylation and ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DHOR super family cl21467
Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It ...
 33-347 1.46e-84

Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It carries the two characteriztic Cys-X-Y-Cys-His haem-binding motifs. The C-terminal high-potential site functions as an electron transfer centre, and the N-terminal low-potential site corresponds to the peroxidatic centre. Its probable function is as a peroxidase.


The actual alignment was detected with superfamily member TIGR00782:

Pssm-ID: 473872 [Multi-domain]  Cd Length: 285  Bit Score: 257.52  E-value: 1.46e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904   33 GVKEGESCGHEFDGIEELNNPLPKWWTYMFFATFIWSVYYLAAYPGL----GNWEGLGKWTSSNQgitslaeskkavaea 108
Cdd:TIGR00782   5 SQGEVQTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWplvsGATKGLLGWSSRSQ--------------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  109 kadgrfvkLDKEYEAAEERFGPIFNKLAQVPVLDlvsskfegdaaqqIALDNGNKheqtdgQVAIEIGQRLFSQNCAQCH 188
Cdd:TIGR00782  70 --------VEEEIKKFNEKNAAKWAKLAQTPLED-------------IAKDPELK------QYARNAGAAIFRTWCAQCH 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  189 GSDARGGTGFPNLTDKDWLYGGTPDKIKETLLYGR---------IAAMPAWGPALGEQGVKEMTAHVLSLS-GRTVNQKD 258
Cdd:TIGR00782 123 GSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrdpddgdtyVGEMPAFGPLLEEADIKDVASYVMSLSsGKPKDEAL 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  259 ADAGAAKFAMMCAACHGADGKGSVANnimvsgvspGAPNLTDNIWLYNGSKRAVEETLNHGRAGVMPAWKDILGEDKIHL 338
Cdd:TIGR00782 203 AAKGQELFADNCTTCHGEDGKGLQEL---------GAPNLTDDVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKA 273


                  ....*....
gi 498239904  339 LTAYVYSLS 347
Cdd:TIGR00782 274 LAAYVHSLG 282
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 33-347 1.46e-84

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 257.52  E-value: 1.46e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904   33 GVKEGESCGHEFDGIEELNNPLPKWWTYMFFATFIWSVYYLAAYPGL----GNWEGLGKWTSSNQgitslaeskkavaea 108
Cdd:TIGR00782   5 SQGEVQTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWplvsGATKGLLGWSSRSQ--------------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  109 kadgrfvkLDKEYEAAEERFGPIFNKLAQVPVLDlvsskfegdaaqqIALDNGNKheqtdgQVAIEIGQRLFSQNCAQCH 188
Cdd:TIGR00782  70 --------VEEEIKKFNEKNAAKWAKLAQTPLED-------------IAKDPELK------QYARNAGAAIFRTWCAQCH 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  189 GSDARGGTGFPNLTDKDWLYGGTPDKIKETLLYGR---------IAAMPAWGPALGEQGVKEMTAHVLSLS-GRTVNQKD 258
Cdd:TIGR00782 123 GSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrdpddgdtyVGEMPAFGPLLEEADIKDVASYVMSLSsGKPKDEAL 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  259 ADAGAAKFAMMCAACHGADGKGSVANnimvsgvspGAPNLTDNIWLYNGSKRAVEETLNHGRAGVMPAWKDILGEDKIHL 338
Cdd:TIGR00782 203 AAKGQELFADNCTTCHGEDGKGLQEL---------GAPNLTDDVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKA 273


                  ....*....
gi 498239904  339 LTAYVYSLS 347
Cdd:TIGR00782 274 LAAYVHSLG 282
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 36-82 3.86e-21

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 84.90  E-value: 3.86e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 498239904   36 EGESCGHEFDGIEELNNPLPKWWTYMFFATFIWSVYYLAAYPGLGNW 82
Cdd:pfam14715   1 GDETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLG 47
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
172-252 1.05e-20

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 87.70  E-value: 1.05e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 172 AIEIGQRLFSQNCAQCHGSDARGGTG-FPNLTDkDWLYGGTPDKIKETLLYGRIA-AMPAWGPALGEQGVKEMTAHVLSL 249
Cdd:COG2010   88 ALARGKALYEQNCAACHGADGKGGLGaAPNLTD-DALYGGDPEALVETILNGRPGgAMPAFGGQLSDEEIAALAAYLRSL 166


                 ...
gi 498239904 250 SGR 252
Cdd:COG2010  167 SGN 169
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 136-252 4.96e-09

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 56.75  E-value: 4.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 136 AQVPVLDLVSSKFEGDAAQQIALDNGNKHEQTDGQVAIEIGQRLFSQNCAQCHGSDARGGTGfPNLTDKDwlYGGTPDKI 215
Cdd:PRK14486 178 AMVAYMQSLGKAIPRRAAGGAEVDLELPNPFATDVAAIAKGKALYDANCAACHGDEAQGQEG-VALNDID--DGDLPDAA 254

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 498239904 216 KETLLYGRIAA--MPAWGPALGEQGVKEMTAHVLSLSGR 252
Cdd:PRK14486 255 YFGMIKGGSDAkgMPGFGGDLSDDDIWAIVAYIRSQKAH 293
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 33-347 1.46e-84

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 257.52  E-value: 1.46e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904   33 GVKEGESCGHEFDGIEELNNPLPKWWTYMFFATFIWSVYYLAAYPGL----GNWEGLGKWTSSNQgitslaeskkavaea 108
Cdd:TIGR00782   5 SQGEVQTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWplvsGATKGLLGWSSRSQ--------------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  109 kadgrfvkLDKEYEAAEERFGPIFNKLAQVPVLDlvsskfegdaaqqIALDNGNKheqtdgQVAIEIGQRLFSQNCAQCH 188
Cdd:TIGR00782  70 --------VEEEIKKFNEKNAAKWAKLAQTPLED-------------IAKDPELK------QYARNAGAAIFRTWCAQCH 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  189 GSDARGGTGFPNLTDKDWLYGGTPDKIKETLLYGR---------IAAMPAWGPALGEQGVKEMTAHVLSLS-GRTVNQKD 258
Cdd:TIGR00782 123 GSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrdpddgdtyVGEMPAFGPLLEEADIKDVASYVMSLSsGKPKDEAL 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  259 ADAGAAKFAMMCAACHGADGKGSVANnimvsgvspGAPNLTDNIWLYNGSKRAVEETLNHGRAGVMPAWKDILGEDKIHL 338
Cdd:TIGR00782 203 AAKGQELFADNCTTCHGEDGKGLQEL---------GAPNLTDDVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKA 273


                  ....*....
gi 498239904  339 LTAYVYSLS 347
Cdd:TIGR00782 274 LAAYVHSLG 282
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 36-82 3.86e-21

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 84.90  E-value: 3.86e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 498239904   36 EGESCGHEFDGIEELNNPLPKWWTYMFFATFIWSVYYLAAYPGLGNW 82
Cdd:pfam14715   1 GDETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLG 47
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
172-252 1.05e-20

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 87.70  E-value: 1.05e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 172 AIEIGQRLFSQNCAQCHGSDARGGTG-FPNLTDkDWLYGGTPDKIKETLLYGRIA-AMPAWGPALGEQGVKEMTAHVLSL 249
Cdd:COG2010   88 ALARGKALYEQNCAACHGADGKGGLGaAPNLTD-DALYGGDPEALVETILNGRPGgAMPAFGGQLSDEEIAALAAYLRSL 166


                 ...
gi 498239904 250 SGR 252
Cdd:COG2010  167 SGN 169
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
189-349 2.39e-17

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 78.45  E-value: 2.39e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 189 GSDARGGTGFPNLTDKDWLYGGTPDKIKETLLYGRIAAMPAWGPALGEQGVKEMTAHVLSLSGRTVNQKDADAGAAKFAM 268
Cdd:COG2010   19 DEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAADAPAADAEALARGKALYEQ 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 269 MCAACHGADGKGSVAnnimvsgvspGAPNLTDNIwLYNGSKRAVEETLNHGR-AGVMPAWKDILGEDKIHLLTAYVYSLS 347
Cdd:COG2010   99 NCAACHGADGKGGLG----------AAPNLTDDA-LYGGDPEALVETILNGRpGGAMPAFGGQLSDEEIAALAAYLRSLS 167


                 ..
gi 498239904 348 QD 349
Cdd:COG2010  168 GN 169
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
172-246 3.06e-13

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 63.96  E-value: 3.06e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 498239904  172 AIEIGQRLFSQNCAQCHGSDARGgtgfPNLTDKDWlyggTPDKIKETLLYGrIAAMPAWGPALGEQGVKEMTAHV 246
Cdd:pfam13442   2 AAAAGEALYAANCASCHGTGGAG----PSLAGRAL----PPEALVDIIRNG-KGAMPAFGGDLSDEELEALAAYL 67
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
247-348 5.05e-13

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 64.37  E-value: 5.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 247 LSLSGRTVNQKDADAGAAkFAMMCAACHGADGKGSVAnnimvsgvsPGAPNLTDNiwlyngSKRAVEETLNHGRAG---- 322
Cdd:COG2863    3 LALLAAPAAAGDAARGKA-YAAACAACHGADGEGNPG---------GGAPRLAGQ------HAEYLVAQLKAFRSGarkn 66

                         90       100
                 ....*....|....*....|....*..
gi 498239904 323 -VMPAWKDILGEDKIHLLTAYVYSLSQ 348
Cdd:COG2863   67 gVMPAIAKGLSDEDIKALAAYIASLKA 93
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 171-280 1.17e-09

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 57.56  E-value: 1.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 171 VAIEIGQRLFS--QNCAQCHGSDARGGTGFPNLTDKDWLYGGTPDKIKETLLYGRIAAMPAWGPALGEQGVKEMTAHVLS 248
Cdd:COG3258   10 AAARRGEELFTngLSCASCHLDAGTKPWGVAAAYPAYRARNGKVVTLEDRINGCFTRSMNGKPLPLDSAEMKALVAYLRW 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 498239904 249 LS-GRTVNQK----------------DADAGAAKFAMMCAACHGADGKG 280
Cdd:COG3258   90 LSrGLPVGVKldgrglpklpkpaasaDVERGKALYAERCASCHGADGEG 138
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 136-252 4.96e-09

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 56.75  E-value: 4.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 136 AQVPVLDLVSSKFEGDAAQQIALDNGNKHEQTDGQVAIEIGQRLFSQNCAQCHGSDARGGTGfPNLTDKDwlYGGTPDKI 215
Cdd:PRK14486 178 AMVAYMQSLGKAIPRRAAGGAEVDLELPNPFATDVAAIAKGKALYDANCAACHGDEAQGQEG-VALNDID--DGDLPDAA 254

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 498239904 216 KETLLYGRIAA--MPAWGPALGEQGVKEMTAHVLSLSGR 252
Cdd:PRK14486 255 YFGMIKGGSDAkgMPGFGGDLSDDDIWAIVAYIRSQKAH 293
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
258-343 8.11e-09

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 51.64  E-value: 8.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  258 DADAGAAKFAMMCAACHGADGKGsvannimvsgvspgaPNLTDNIWlyngSKRAVEETLNHGRaGVMPAWKDILGEDKIH 337
Cdd:pfam13442   2 AAAAGEALYAANCASCHGTGGAG---------------PSLAGRAL----PPEALVDIIRNGK-GAMPAFGGDLSDEELE 61


                  ....*.
gi 498239904  338 LLTAYV 343
Cdd:pfam13442  62 ALAAYL 67
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 174-250 3.87e-07

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 47.53  E-value: 3.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  174 EIGQRLFSQNCAQCHGSDARGGT-GFPNLTDKDWLYGGTPDKIKETLLYGRIAAMPAWG-----------PALGEQGVKE 241
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGaGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAggppgtgmpafDGLTDEEIAD 80


                  ....*....
gi 498239904  242 MTAHVLSLS 250
Cdd:pfam00034  81 LVAYLLSLS 89
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
173-251 7.36e-07

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 47.03  E-value: 7.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 173 IEIGQRlFSQNCAQCHGSDARG--GTGFPNLTDKDwlyggtPDKIKETLLYGR-----IAAMPAWGPALGEQGVKEMTAH 245
Cdd:COG2863   15 AARGKA-YAAACAACHGADGEGnpGGGAPRLAGQH------AEYLVAQLKAFRsgarkNGVMPAIAKGLSDEDIKALAAY 87


                 ....*.
gi 498239904 246 VLSLSG 251
Cdd:COG2863   88 IASLKA 93
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 260-347 7.38e-07

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 46.76  E-value: 7.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904  260 DAGAAKFAMMCAACHGADGKGSVANNIMVSGV-SPGAPNLTDNIWLYNGSKRAVEETLNHGRAGVMPAWKDILGEDKIHL 338
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGPDLAGLaARYPGDALGAIRENKHAIGGGGVDRAGGPPGTGMPAFDGLTDEEIAD 80


                  ....*....
gi 498239904  339 LTAYVYSLS 347
Cdd:pfam00034  81 LVAYLLSLS 89
c550_PedF TIGR04494
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ...
 172-201 1.26e-05

cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.


Pssm-ID: 275287  Cd Length: 133  Bit Score: 44.31  E-value: 1.26e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 498239904  172 AIEIGQRLFSQNCAQCHGSDARGGTGFPNL 201
Cdd:TIGR04494  50 AIRIGASAYNQNCARCHGLEAISGGIAPDL 79
PetJ COG5677
Cytochrome c6 [Energy production and conversion];
251-348 1.15e-03

Cytochrome c6 [Energy production and conversion];


Pssm-ID: 444391 [Multi-domain]  Cd Length: 112  Bit Score: 38.32  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 251 GRTVNQKDADAGAAKFAMMCAACHgADGkgsvaNNIMVSGVSPGAPNLTdniwLYN-GSKRAVEETLNHGRaGVMPAWKD 329
Cdd:COG5677   20 TSPALAADLANGAKIFSANCAGCH-IGG-----GNIIRRGKTLKKEALE----KYGmDSLEAIATQVTNGK-NAMPAFKD 88

                         90
                 ....*....|....*....
gi 498239904 330 ILGEDKIHLLTAYVysLSQ 348
Cdd:COG5677   89 RLSEEQIEDVAAYV--LDQ 105
PetJ COG5677
Cytochrome c6 [Energy production and conversion];
176-248 2.01e-03

Cytochrome c6 [Energy production and conversion];


Pssm-ID: 444391 [Multi-domain]  Cd Length: 112  Bit Score: 37.55  E-value: 2.01e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 498239904 176 GQRLFSQNCAQCHgsdARGGT---GFPNLTDKDW-LYG-GTPDKIKETLLYGRiAAMPAWGPALGEQGVKEMTAHVLS 248
Cdd:COG5677   31 GAKIFSANCAGCH---IGGGNiirRGKTLKKEALeKYGmDSLEAIATQVTNGK-NAMPAFKDRLSEEQIEDVAAYVLD 104
PRK13697 PRK13697
cytochrome c6; Provisional
 258-343 3.93e-03

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 36.69  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498239904 258 DADAGAAKFAMMCAACHgADGKgsvanNIMVSGVSPGAPNLtDNIWLYngSKRAVEETLNHGRaGVMPAWKDILGEDKIH 337
Cdd:PRK13697  27 DAANGEQVFSANCASCH-AGGK-----NLVNAGKTLKKADL-EKYGMY--SLEAITAQVTNGK-NAMPAFKDRLSPDQIE 96


                 ....*.
gi 498239904 338 LLTAYV 343
Cdd:PRK13697  97 DVAAYV 102
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
176-202 6.73e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 35.63  E-value: 6.73e-03
                         10        20
                 ....*....|....*....|....*....
gi 498239904 176 GQRLFSQNCAQCH--GSDARGGTGfPNLT 202
Cdd:COG3474    6 GEKLFNRKCAACHsvDGGAGNRVG-PNLN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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