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Conserved domains on  [gi|498349791|ref|WP_010663947|]
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hypothetical protein [Marinilabilia salmonicolor]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRiA4_ORF3 super family cl06802
Plasmid pRiA4b ORF-3-like protein; Members of this family are similar to the protein product ...
 2-98 5.83e-03

Plasmid pRiA4b ORF-3-like protein; Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases (Swiss:Q9LCU7, Swiss:Q50439), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.


The actual alignment was detected with superfamily member pfam07929:

Pssm-ID: 462319  Cd Length: 165  Bit Score: 35.65  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498349791    2 IYKFRIISSENEDFI-REIAINSHATFFDLHTFIVDELNYDKSQMTSFFLTDQNWHKETevtliDMTDGQDPDIKVMDTT 80
Cdd:pfam07929   2 IYQLKVTLKGIKPPIwRRLEVPSDITLARLHDIIQAAMGWEDYHLHEFEIGGRRYGIPE-----DDDPDEGPEVLDERKV 76

                          90
                  ....*....|....*...
gi 498349791   81 KLGTLITEKKQRLLYVFD 98
Cdd:pfam07929  77 RLDDVLTGEGKKFTYEYD 94
 
Name Accession Description Interval E-value
PRiA4_ORF3 pfam07929
Plasmid pRiA4b ORF-3-like protein; Members of this family are similar to the protein product ...
 2-98 5.83e-03

Plasmid pRiA4b ORF-3-like protein; Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases (Swiss:Q9LCU7, Swiss:Q50439), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.


Pssm-ID: 462319  Cd Length: 165  Bit Score: 35.65  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498349791    2 IYKFRIISSENEDFI-REIAINSHATFFDLHTFIVDELNYDKSQMTSFFLTDQNWHKETevtliDMTDGQDPDIKVMDTT 80
Cdd:pfam07929   2 IYQLKVTLKGIKPPIwRRLEVPSDITLARLHDIIQAAMGWEDYHLHEFEIGGRRYGIPE-----DDDPDEGPEVLDERKV 76

                          90
                  ....*....|....*...
gi 498349791   81 KLGTLITEKKQRLLYVFD 98
Cdd:pfam07929  77 RLDDVLTGEGKKFTYEYD 94
 
Name Accession Description Interval E-value
PRiA4_ORF3 pfam07929
Plasmid pRiA4b ORF-3-like protein; Members of this family are similar to the protein product ...
 2-98 5.83e-03

Plasmid pRiA4b ORF-3-like protein; Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases (Swiss:Q9LCU7, Swiss:Q50439), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.


Pssm-ID: 462319  Cd Length: 165  Bit Score: 35.65  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498349791    2 IYKFRIISSENEDFI-REIAINSHATFFDLHTFIVDELNYDKSQMTSFFLTDQNWHKETevtliDMTDGQDPDIKVMDTT 80
Cdd:pfam07929   2 IYQLKVTLKGIKPPIwRRLEVPSDITLARLHDIIQAAMGWEDYHLHEFEIGGRRYGIPE-----DDDPDEGPEVLDERKV 76

                          90
                  ....*....|....*...
gi 498349791   81 KLGTLITEKKQRLLYVFD 98
Cdd:pfam07929  77 RLDDVLTGEGKKFTYEYD 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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