|
Name |
Accession |
Description |
Interval |
E-value |
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
632-876 |
1.58e-38 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
:
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 145.06 E-value: 1.58e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 632 NDDGVIINEKLAKLFGYKVGDQLNLENSDNQ--TYHVKIAAIAE----NYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFD 705
Cdd:COG4591 32 ASDEVVLGEGLAKKLGLKVGDTITLISPDGSpkTRRFTVVGIFEsggyELDGSLVYVPLETAQELLGLGDQVSGILVKLK 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 706 kklSSKQETSIGEALTKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIRELSTIKV 785
Cdd:COG4591 112 ---DGADAEAVAAALEAALPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 786 LGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPI---IHWPSYLYSAVITMCFTLFVMVIMH 862
Cdd:COG4591 189 LGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGILLPFIFALpvsLSPSDVLLALLLALLISLLASLYPA 268
|
250
....*....|....
gi 498396941 863 RKLKKINMIEALKS 876
Cdd:COG4591 269 RRAARLDPVEALRG 282
|
|
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
317-474 |
7.08e-20 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
:
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 90.75 E-value: 7.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 317 KAPTYYYFTREDNpgFSEYQDNADRISSLATLFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITY 396
Cdd:COG4591 126 ALPGLEVKTWREL--NAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKALGASRRQIRRIFLLE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 397 ATVASLTGALLGLAVGY---YLFPKIIFDAYGQMYNIPDLVTPWYLnysLWGIIVALACTVGAALV-TLRIDLLStPATL 472
Cdd:COG4591 204 GLLLGLIGGLLGLLLGLllaLLLNALLGILLPFIFALPVSLSPSDV---LLALLLALLISLLASLYpARRAARLD-PVEA 279
|
..
gi 498396941 473 LR 474
Cdd:COG4591 280 LR 281
|
|
| PRK12705 super family |
cl36167 |
hypothetical protein; Provisional |
220-345 |
8.31e-05 |
|
hypothetical protein; Provisional
The actual alignment was detected with superfamily member PRK12705:
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 46.24 E-value: 8.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 220 LKHQNTYSSDYEKKREQALNQ---VKEALKNRPEEQIAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQK 296
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEaeeKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 498396941 297 DELAKQEQLLAEKETELANLKAPTYYYFTREdnPGFSEYQDNADRISSL 345
Cdd:PRK12705 105 NQLEEREKALSARELELEELEKQLDNELYRV--AGLTPEQARKLLLKLL 151
|
|
| MacB_PCD |
pfam12704 |
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ... |
21-176 |
9.07e-05 |
|
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
:
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 44.44 E-value: 9.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 21 FLSIMGIIfLGVMVFV-------GLKATGPDMIKTANNYYQKEQLPDARIISTMGLEKKDLTTLQSLKDVETVVPR-YTI 92
Cdd:pfam12704 2 ALTVLGIA-IGVAAVIailslgdGLLSAVPEQISDSDNLVVVQPGAAGGGGTRPPLSDPDAEALRRAVPVEAVAPVvSTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 93 DATIGPQNNAVKLFGYRKNQAGSVNYQVVDGR------LPKQTNEIALD-TLAKTRY--DYKMGDKITLNDaaikekglt 163
Cdd:pfam12704 81 RYGNSTTERLVTVVGVDPDFFKVFGLPLAEGRffteadVLGGPNVVVLGeSLAEKLFggDDPVGKTIRLNG--------- 151
|
170
....*....|...
gi 498396941 164 qTHFTVVGFINSP 176
Cdd:pfam12704 152 -QPFTVVGVLPDF 163
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
632-876 |
1.58e-38 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 145.06 E-value: 1.58e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 632 NDDGVIINEKLAKLFGYKVGDQLNLENSDNQ--TYHVKIAAIAE----NYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFD 705
Cdd:COG4591 32 ASDEVVLGEGLAKKLGLKVGDTITLISPDGSpkTRRFTVVGIFEsggyELDGSLVYVPLETAQELLGLGDQVSGILVKLK 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 706 kklSSKQETSIGEALTKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIRELSTIKV 785
Cdd:COG4591 112 ---DGADAEAVAAALEAALPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 786 LGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPI---IHWPSYLYSAVITMCFTLFVMVIMH 862
Cdd:COG4591 189 LGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGILLPFIFALpvsLSPSDVLLALLLALLISLLASLYPA 268
|
250
....*....|....
gi 498396941 863 RKLKKINMIEALKS 876
Cdd:COG4591 269 RRAARLDPVEALRG 282
|
|
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
317-474 |
7.08e-20 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 90.75 E-value: 7.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 317 KAPTYYYFTREDNpgFSEYQDNADRISSLATLFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITY 396
Cdd:COG4591 126 ALPGLEVKTWREL--NAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKALGASRRQIRRIFLLE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 397 ATVASLTGALLGLAVGY---YLFPKIIFDAYGQMYNIPDLVTPWYLnysLWGIIVALACTVGAALV-TLRIDLLStPATL 472
Cdd:COG4591 204 GLLLGLIGGLLGLLLGLllaLLLNALLGILLPFIFALPVSLSPSDV---LLALLLALLISLLASLYpARRAARLD-PVEA 279
|
..
gi 498396941 473 LR 474
Cdd:COG4591 280 LR 281
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
751-870 |
2.05e-15 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 73.05 E-value: 2.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 751 WVLIAVSGSLALIVLYNLTNINVSERIRELSTIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVD 830
Cdd:pfam02687 1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSS 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 498396941 831 LIMFSPIIHWPSYLYSAVITMCFTLFVMVIMHRKLKKINM 870
Cdd:pfam02687 81 GISLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
348-462 |
8.55e-15 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 71.51 E-value: 8.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 348 LFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKIIFDAYGQM 427
Cdd:pfam02687 2 LFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSSG 81
|
90 100 110
....*....|....*....|....*....|....*
gi 498396941 428 YNIPDLVTPWYLnysLWGIIVALACTVGAALVTLR 462
Cdd:pfam02687 82 ISLPILVPPLSI---LIALLLALLIALLASLLPAL 113
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
220-345 |
8.31e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 46.24 E-value: 8.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 220 LKHQNTYSSDYEKKREQALNQ---VKEALKNRPEEQIAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQK 296
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEaeeKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 498396941 297 DELAKQEQLLAEKETELANLKAPTYYYFTREdnPGFSEYQDNADRISSL 345
Cdd:PRK12705 105 NQLEEREKALSARELELEELEKQLDNELYRV--AGLTPEQARKLLLKLL 151
|
|
| MacB_PCD |
pfam12704 |
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ... |
21-176 |
9.07e-05 |
|
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 44.44 E-value: 9.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 21 FLSIMGIIfLGVMVFV-------GLKATGPDMIKTANNYYQKEQLPDARIISTMGLEKKDLTTLQSLKDVETVVPR-YTI 92
Cdd:pfam12704 2 ALTVLGIA-IGVAAVIailslgdGLLSAVPEQISDSDNLVVVQPGAAGGGGTRPPLSDPDAEALRRAVPVEAVAPVvSTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 93 DATIGPQNNAVKLFGYRKNQAGSVNYQVVDGR------LPKQTNEIALD-TLAKTRY--DYKMGDKITLNDaaikekglt 163
Cdd:pfam12704 81 RYGNSTTERLVTVVGVDPDFFKVFGLPLAEGRffteadVLGGPNVVVLGeSLAEKLFggDDPVGKTIRLNG--------- 151
|
170
....*....|...
gi 498396941 164 qTHFTVVGFINSP 176
Cdd:pfam12704 152 -QPFTVVGVLPDF 163
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
235-318 |
2.28e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 40.58 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 235 EQALNQVKEAL------KNRPEEQIAALRDSAQPDINQGRQALETGKQALA-------------------QLEQQpgipA 289
Cdd:COG1842 36 EEDLVEARQALaqvianQKRLERQLEELEAEAEKWEEKARLALEKGREDLArealerkaeleaqaealeaQLAQL----E 111
|
90 100
....*....|....*....|....*....
gi 498396941 290 EMLEKQKDELAKQEQLLAEKETELANLKA 318
Cdd:COG1842 112 EQVEKLKEALRQLESKLEELKAKKDTLKA 140
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
632-876 |
1.58e-38 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 145.06 E-value: 1.58e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 632 NDDGVIINEKLAKLFGYKVGDQLNLENSDNQ--TYHVKIAAIAE----NYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFD 705
Cdd:COG4591 32 ASDEVVLGEGLAKKLGLKVGDTITLISPDGSpkTRRFTVVGIFEsggyELDGSLVYVPLETAQELLGLGDQVSGILVKLK 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 706 kklSSKQETSIGEALTKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIRELSTIKV 785
Cdd:COG4591 112 ---DGADAEAVAAALEAALPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 786 LGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPI---IHWPSYLYSAVITMCFTLFVMVIMH 862
Cdd:COG4591 189 LGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGILLPFIFALpvsLSPSDVLLALLLALLISLLASLYPA 268
|
250
....*....|....
gi 498396941 863 RKLKKINMIEALKS 876
Cdd:COG4591 269 RRAARLDPVEALRG 282
|
|
| SalY |
COG0577 |
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; |
501-876 |
7.01e-25 |
|
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
Pssm-ID: 440342 [Multi-domain] Cd Length: 339 Bit Score: 106.91 E-value: 7.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 501 KVTARNLFRYKRRMLMTVIGIAGCMGLLIVGFGLRDSIVDVATIQFNKIWHYQAVVTFKEQTTPEETK--EYQETLRKLD 578
Cdd:COG0577 4 RLALRSLRRNKLRSLLTVLGIAIGIALVIAILALGRGLRRSLLRDLDSLGFDLLTVSRTPGGSRATLSyeDLREALRALP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 579 GLNKTIPLYSEIFKTKGKGAPTQNITLY-VPQDPSKMADFQLfndrVTGEKYSLNDDG-----VIINEKLA-KLFGYK-- 649
Cdd:COG0577 84 GVESVAPSSSGSATVRYGGGEPPSVRVLgVDPDYFRVLGIPL----LAGRFFTAADDLgappvVVIGEALArRLFGGEdp 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 650 VGDQLNLensDNQTYHVkiaaiaenyTGhfVYMTpKLYQTMTKQKPEYNTEfllfdkklsskqetsigealtkqpkvlnI 729
Cdd:COG0577 160 VGKTIRL---NGRPFTV---------VG--VVEA-ELRALLRRRDPGDDFE----------------------------V 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 730 TFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIRELSTIKVLGFYDREVTTYVYRENIILTFIGI 809
Cdd:COG0577 197 QTLDEILAALYGVLRTLTLLLGAIAGLALLVACIGIMNLMLASVTERTREIGIRKALGASRRDILRQFLTEALLLALLGG 276
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498396941 810 IVGCFFGkilhqYILATVEVDLIMFSPIIHWPSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKS 876
Cdd:COG0577 277 LLGLLLA-----LLLLRLLAALLGLPVSLDPWVLLLALALSLLVGLLAGLYPARRAARLDPVEALRS 338
|
|
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
317-474 |
7.08e-20 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 90.75 E-value: 7.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 317 KAPTYYYFTREDNpgFSEYQDNADRISSLATLFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITY 396
Cdd:COG4591 126 ALPGLEVKTWREL--NAALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKALGASRRQIRRIFLLE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 397 ATVASLTGALLGLAVGY---YLFPKIIFDAYGQMYNIPDLVTPWYLnysLWGIIVALACTVGAALV-TLRIDLLStPATL 472
Cdd:COG4591 204 GLLLGLIGGLLGLLLGLllaLLLNALLGILLPFIFALPVSLSPSDV---LLALLLALLISLLASLYpARRAARLD-PVEA 279
|
..
gi 498396941 473 LR 474
Cdd:COG4591 280 LR 281
|
|
| YbbP |
COG3127 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ... |
326-876 |
2.91e-18 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 89.86 E-value: 2.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 326 REDNPGFSEyqdNADRISSLATLFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGA 405
Cdd:COG3127 239 EDARPELGR---ALDRAEQFLLLVALLALLLAGVAVANAARRYVARRLDTIALLRCLGASRRQIFRIYLLQLLLLGLLGS 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 406 LLGLAVGyYLFPKIIFDAYGQMYNIPdLVTPWYLNYSLWGIIVALACTVGAALVTLRiDLLST-PATLLRPKAPKAGQRI 484
Cdd:COG3127 316 LLGLLLG-ALLQALLAALLADLLPVP-LEPALSPLPLLLGLLVGLLVLLLFALPPLL-RLRRVpPLRVLRRDLEPARPRA 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 485 ------------------------------------------------LLERIRPLWQ---RMSFiqkvtaRNLFRYKRR 513
Cdd:COG3127 393 wlalllalaglaalalwlsgdlrlaliflggllvallllallawlllrLLRRLPRRLGpalRLAL------ANLHRPPAR 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 514 MLMTVIGIA-GCMGLLIVGFgLRDSIVDVATIQFNKiwhyQAVVTFKEQTTPEETKEYQETLRKLDGlnKTIPLYSEIFK 592
Cdd:COG3127 467 TAAQVLALGlGLMLLLLLAL-VRGDLLASWQAQLPE----DAPNYFLINIQPDQVDAFRAFLAAQGV--AALELYPMVRG 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 593 --TKGKGAPTQNITlYVPQDP----------SKMADFQLFNDRVTGEKYSLNDDG---VIINEKLAKLFGYKVGDQLNLe 657
Cdd:COG3127 540 rlVAINGQPVAELA-YDDDRArwvlrrefnlTWSATLPEGNRLVAGEWWPALDAGeplVSVEEGLAERLGLKLGDTLTF- 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 658 NSDNQTYHVKIAAIAE--------NYtghFVYMTPklyQTMTKQKPEYNTEFllfdkKLSSKQETSIGEALTKQ-PKVLN 728
Cdd:COG3127 618 NVAGREVTATVTSLRKvdwdsmrpNF---FVVFSP---GALEGAPATYITSF-----YLPPAAEAALLRALVRAfPNVTV 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 729 ITfLTAMKGSFDDMlksLDIVIWVLIAVSG-SL--ALIVLYNLTNINVSERIRELSTIKVLGFYDREVTTYVYRENIIL- 804
Cdd:COG3127 687 ID-VDAILDQVRDI---LDQVSLAVEFLAGfALlaGLLVLAAALAASRDERTREAALLRTLGASRRQLRRALALEFALLg 762
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 498396941 805 ---TFIGIIVGCFFGKILHQYILAtvevdlimFSPIIHWPSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKS 876
Cdd:COG3127 763 llaGLLAALLAELAGWALARFVFD--------LPFSPPWWLWLAGLLGGALLVLLAGLLGARRVLRQPPLEVLRE 829
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
751-870 |
2.05e-15 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 73.05 E-value: 2.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 751 WVLIAVSGSLALIVLYNLTNINVSERIRELSTIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVD 830
Cdd:pfam02687 1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSS 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 498396941 831 LIMFSPIIHWPSYLYSAVITMCFTLFVMVIMHRKLKKINM 870
Cdd:pfam02687 81 GISLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
348-462 |
8.55e-15 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 71.51 E-value: 8.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 348 LFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKIIFDAYGQM 427
Cdd:pfam02687 2 LFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSSG 81
|
90 100 110
....*....|....*....|....*....|....*
gi 498396941 428 YNIPDLVTPWYLnysLWGIIVALACTVGAALVTLR 462
Cdd:pfam02687 82 ISLPILVPPLSI---LIALLLALLIALLASLLPAL 113
|
|
| SalY |
COG0577 |
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; |
319-460 |
4.29e-13 |
|
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
Pssm-ID: 440342 [Multi-domain] Cd Length: 339 Bit Score: 71.47 E-value: 4.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 319 PTYYYFTREDNpgFSEYQDNADRISSLATLFPLFFFLIAALVSLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYAT 398
Cdd:COG0577 192 DDFEVQTLDEI--LAALYGVLRTLTLLLGAIAGLALLVACIGIMNLMLASVTERTREIGIRKALGASRRDILRQFLTEAL 269
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498396941 399 VASLTGALLGLAVGYYLFPkiifdAYGQMYNIPDLVTPWYlnyslwgIIVALACTVGAALVT 460
Cdd:COG0577 270 LLALLGGLLGLLLALLLLR-----LLAALLGLPVSLDPWV-------LLLALALSLLVGLLA 319
|
|
| FtsX |
COG2177 |
Cell division protein FtsX [Cell cycle control, cell division, chromosome partitioning]; |
246-462 |
2.66e-07 |
|
Cell division protein FtsX [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441780 [Multi-domain] Cd Length: 292 Bit Score: 53.29 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 246 KNRPEEQIAALRD--SAQPDINQGRqaLETGKQALAQLEQQPGIP--AEMLE----------KQKDELAKQEQLLAEket 311
Cdd:COG2177 64 DDATEAQIAALEEklRALPGVASVR--YISKEEALEELKEWLGESdlLELLDenplpasievKLKPEDPEDLEALAA--- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 312 ELANLkaptyyyftrednPGFSEYQDN---ADRISSLATLFPLFFFLIAALVSLTTM------TRM-VEEKRMEIGSLKA 381
Cdd:COG2177 139 ALEAL-------------PGVAEVDYDrewVERLFALLNLLRLVGLVLAALLLLAAVlligntIRLaIYSRREEIEIMKL 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 382 LGYRNREIASIFITYATVASLTGALLGLAVGYYLFpKIIFDAYGQMYNIPDLVTPWYLNYSLWGIIVALACTVGA--ALV 459
Cdd:COG2177 206 VGATDGFIRRPFLLEGALLGLLGGLLALLLLALLY-LLLVSALADGLAFLSLLSLGGLLLLLLLLLLLLGALLGAlgSRL 284
|
...
gi 498396941 460 TLR 462
Cdd:COG2177 285 AVR 287
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
220-345 |
8.31e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 46.24 E-value: 8.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 220 LKHQNTYSSDYEKKREQALNQ---VKEALKNRPEEQIAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQK 296
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEaeeKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 498396941 297 DELAKQEQLLAEKETELANLKAPTYYYFTREdnPGFSEYQDNADRISSL 345
Cdd:PRK12705 105 NQLEEREKALSARELELEELEKQLDNELYRV--AGLTPEQARKLLLKLL 151
|
|
| MacB_PCD |
pfam12704 |
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ... |
21-176 |
9.07e-05 |
|
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 44.44 E-value: 9.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 21 FLSIMGIIfLGVMVFV-------GLKATGPDMIKTANNYYQKEQLPDARIISTMGLEKKDLTTLQSLKDVETVVPR-YTI 92
Cdd:pfam12704 2 ALTVLGIA-IGVAAVIailslgdGLLSAVPEQISDSDNLVVVQPGAAGGGGTRPPLSDPDAEALRRAVPVEAVAPVvSTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 93 DATIGPQNNAVKLFGYRKNQAGSVNYQVVDGR------LPKQTNEIALD-TLAKTRY--DYKMGDKITLNDaaikekglt 163
Cdd:pfam12704 81 RYGNSTTERLVTVVGVDPDFFKVFGLPLAEGRffteadVLGGPNVVVLGeSLAEKLFggDDPVGKTIRLNG--------- 151
|
170
....*....|...
gi 498396941 164 qTHFTVVGFINSP 176
Cdd:pfam12704 152 -QPFTVVGVLPDF 163
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
235-318 |
2.28e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 40.58 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 235 EQALNQVKEAL------KNRPEEQIAALRDSAQPDINQGRQALETGKQALA-------------------QLEQQpgipA 289
Cdd:COG1842 36 EEDLVEARQALaqvianQKRLERQLEELEAEAEKWEEKARLALEKGREDLArealerkaeleaqaealeaQLAQL----E 111
|
90 100
....*....|....*....|....*....
gi 498396941 290 EMLEKQKDELAKQEQLLAEKETELANLKA 318
Cdd:COG1842 112 EQVEKLKEALRQLESKLEELKAKKDTLKA 140
|
|
| EMP70 |
pfam02990 |
Endomembrane protein 70; |
831-867 |
2.96e-03 |
|
Endomembrane protein 70;
Pssm-ID: 460774 Cd Length: 512 Bit Score: 40.99 E-value: 2.96e-03
10 20 30
....*....|....*....|....*....|....*..
gi 498396941 831 LIMFSPIIHWPSYLYSAVITMCFTLFVMVIMHRKLKK 867
Cdd:pfam02990 183 LHVPDPKIHWFSIINSLVIVLFLSGIVAMILLRTLRK 219
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
213-316 |
9.40e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 9.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498396941 213 LLISFRSLKHQNTYSSDYEKKREQALNQVKEALKNRpeEQIAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEML 292
Cdd:COG4942 8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100
....*....|....*....|....
gi 498396941 293 EKQKDELAKQEQLLAEKETELANL 316
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAEL 109
|
|
| |
