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Conserved domains on  [gi|498415829|ref|WP_010724528|]
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MULTISPECIES: ArdC-like ssDNA-binding domain-containing protein [Enterococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
379-496 5.89e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 56.10  E-value: 5.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 379 FKNGNFDGyRFVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENNDFTEMSMYDSTIHGGSMRNSNL---KNSTIWGTKID 455
Cdd:COG1357   22 LSGANLSG-ALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLS 100

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 498415829 456 YFNMSNVNLLSTTFEDVDFSKIkigqsiqNLDCANFY---LSGA 496
Cdd:COG1357  101 GANLRGANLSGANLSGADLSGA-------DLSGANLSgadLSGA 137
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
 44-143 3.31e-07

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


:

Pssm-ID: 429975  Cd Length: 127  Bit Score: 50.04  E-value: 3.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829   44 FAKFMSKIHNYSPLNLSLIDEQFEGA----IAVGSYKMWSEQGFSVRKGEKGIGIYTHAPvtiFIDEEGKEKTLREATAE 119
Cdd:pfam08401  34 LPRNAATGRPYSGINVLLLWLAAPEAgytsPRWLTFKQAKELGGQVRKGEKGTPVVYYKF---FVKEDEDDKDYKEADEE 110

                          90       100
                  ....*....|....*....|....
gi 498415829  120 EKKKiksgelsSRRIEHFKKGYVF 143
Cdd:pfam08401 111 GEEE-------EREIPFLKTYTVF 127
ArdC super family cl39143
Antirestriction protein ArdC [Replication, recombination and repair];
73-291 1.61e-06

Antirestriction protein ArdC [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG4227:

Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 50.62  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  73 GSYKMWSEQGFSVRKGEKGIGIythapvtIFIDEEGKEktlreataEEKKKIKSGELSSRRIeHFKKGY-VFDVSQTtat 151
Cdd:COG4227   75 LTFKQAKELGGQVRKGEKGTLV-------VYYKRFEKE--------DEDEEDEEGEEVERRI-PFLKAYtVFNAEQI--- 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 152 eEDLPKIFPNRvwnfkVDEETNLDQLERgVDTLANELGISIkdmresmvgELGSARgAYfqYVDGTEEIAL----NFRNS 227
Cdd:COG4227  136 -DGLPEEYYPL-----PEPLPESERIER-AEAFIAATGADI---------RHGGDR-AF--YSPSTDRIQMppreQFKDA 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498415829 228 rtQNI-ATSIHELAHKKMH----NRLEKG----ASYPTEikEFQAELTSFVVCNNYGIDTSdfTIP----YVANWTK 291
Cdd:COG4227  197 --EDYyATLLHELGHWTGHksrlNRDLGGrfgsEAYAFE--ELVAELGSAFLCAELGIAPE--PREnhaaYIASWLK 267
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
379-496 5.89e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 56.10  E-value: 5.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 379 FKNGNFDGyRFVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENNDFTEMSMYDSTIHGGSMRNSNL---KNSTIWGTKID 455
Cdd:COG1357   22 LSGANLSG-ALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLS 100

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 498415829 456 YFNMSNVNLLSTTFEDVDFSKIkigqsiqNLDCANFY---LSGA 496
Cdd:COG1357  101 GANLRGANLSGANLSGADLSGA-------DLSGANLSgadLSGA 137
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
 44-143 3.31e-07

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


Pssm-ID: 429975  Cd Length: 127  Bit Score: 50.04  E-value: 3.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829   44 FAKFMSKIHNYSPLNLSLIDEQFEGA----IAVGSYKMWSEQGFSVRKGEKGIGIYTHAPvtiFIDEEGKEKTLREATAE 119
Cdd:pfam08401  34 LPRNAATGRPYSGINVLLLWLAAPEAgytsPRWLTFKQAKELGGQVRKGEKGTPVVYYKF---FVKEDEDDKDYKEADEE 110

                          90       100
                  ....*....|....*....|....
gi 498415829  120 EKKKiksgelsSRRIEHFKKGYVF 143
Cdd:pfam08401 111 GEEE-------EREIPFLKTYTVF 127
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
73-291 1.61e-06

Antirestriction protein ArdC [Replication, recombination and repair];


Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 50.62  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  73 GSYKMWSEQGFSVRKGEKGIGIythapvtIFIDEEGKEktlreataEEKKKIKSGELSSRRIeHFKKGY-VFDVSQTtat 151
Cdd:COG4227   75 LTFKQAKELGGQVRKGEKGTLV-------VYYKRFEKE--------DEDEEDEEGEEVERRI-PFLKAYtVFNAEQI--- 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 152 eEDLPKIFPNRvwnfkVDEETNLDQLERgVDTLANELGISIkdmresmvgELGSARgAYfqYVDGTEEIAL----NFRNS 227
Cdd:COG4227  136 -DGLPEEYYPL-----PEPLPESERIER-AEAFIAATGADI---------RHGGDR-AF--YSPSTDRIQMppreQFKDA 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498415829 228 rtQNI-ATSIHELAHKKMH----NRLEKG----ASYPTEikEFQAELTSFVVCNNYGIDTSdfTIP----YVANWTK 291
Cdd:COG4227  197 --EDYyATLLHELGHWTGHksrlNRDLGGrfgsEAYAFE--ELVAELGSAFLCAELGIAPE--PREnhaaYIASWLK 267
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
389-449 8.26e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.49  E-value: 8.26e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498415829  389 FVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENN-----DFTEMSMYDSTIHGGSMRNSNLKNSTI 449
Cdd:pfam13599   8 FEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCnlrdvDFLEAQLKNAQFSGCNLKNSNFSDVKL 73
Peptidase_M78 pfam06114
IrrE N-terminal-like domain; This entry includes the catalytic domain of the protein ImmA, ...
 185-265 1.74e-04

IrrE N-terminal-like domain; This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.


Pssm-ID: 399250  Cd Length: 122  Bit Score: 42.02  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  185 ANELGISIkdMRESmvgeLGSARGAYFQYVDGTEEIALNFRNSRTQNIATSIHELAHKKMH----NRLEKGASYPTEIKE 260
Cdd:pfam06114   1 AERLGIRV--FFLP----LGAEDGDGRRFDRHTPVIFLNENLSPTRQRFTLAHELGHLLLHeggdTLSDQFDFKTAEARE 74


                  ....*
gi 498415829  261 FQAEL 265
Cdd:pfam06114  75 REANI 79
synapt_SV2 TIGR01299
synaptic vesicle protein SV2; This model describes a tightly conserved subfamily of the larger ...
 346-456 1.51e-03

synaptic vesicle protein SV2; This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.


Pssm-ID: 130366 [Multi-domain]  Cd Length: 742  Bit Score: 42.27  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  346 SALKNSFANDGKEVEKKNKIFENQV-----FDRDSYI--FFKNGNFDGYRFVDCTFDKVNMSNSSFKNtvfekCNFEFAN 418
Cdd:TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIhrggeYDNDKFIglKFKSVSFEDSLFEECTFDDVTSSNTFFKN-----CTFIDTL 555

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 498415829  419 MENNDFTEMSMYDSTIHGGSMrnsnLKNSTiwGTKIDY 456
Cdd:TIGR01299 556 FENTDFEEYKFIDSEFQNCSF----LHNKE--GCPIDF 587
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
379-496 5.89e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 56.10  E-value: 5.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 379 FKNGNFDGyRFVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENNDFTEMSMYDSTIHGGSMRNSNL---KNSTIWGTKID 455
Cdd:COG1357   22 LSGANLSG-ALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLS 100

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 498415829 456 YFNMSNVNLLSTTFEDVDFSKIkigqsiqNLDCANFY---LSGA 496
Cdd:COG1357  101 GANLRGANLSGANLSGADLSGA-------DLSGANLSgadLSGA 137
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
388-478 2.29e-08

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 54.56  E-value: 2.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 388 RFVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENNDFTEMSMYDSTIHGGSMRNSNLKNSTIWGTKIDYFNMSNVNLLST 467
Cdd:COG1357   88 NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGA 167

                         90
                 ....*....|.
gi 498415829 468 TFEDVDFSKIK 478
Cdd:COG1357  168 NLANLEGADLK 178
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
 44-143 3.31e-07

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


Pssm-ID: 429975  Cd Length: 127  Bit Score: 50.04  E-value: 3.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829   44 FAKFMSKIHNYSPLNLSLIDEQFEGA----IAVGSYKMWSEQGFSVRKGEKGIGIYTHAPvtiFIDEEGKEKTLREATAE 119
Cdd:pfam08401  34 LPRNAATGRPYSGINVLLLWLAAPEAgytsPRWLTFKQAKELGGQVRKGEKGTPVVYYKF---FVKEDEDDKDYKEADEE 110

                          90       100
                  ....*....|....*....|....
gi 498415829  120 EKKKiksgelsSRRIEHFKKGYVF 143
Cdd:pfam08401 111 GEEE-------EREIPFLKTYTVF 127
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
379-491 1.22e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 49.55  E-value: 1.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 379 FKNGNFDGYRFVDCTFdkVNMSNSSFKNTVFEKCNFEFANMENNDFTEMSMYDSTIHGGSMRNSNLKNSTIWGTkidyfN 458
Cdd:COG1357   71 LSGANLTGADLSGANL--ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGA-----N 143

                         90       100       110
                 ....*....|....*....|....*....|....
gi 498415829 459 MSNVNLLSTTFEDVDFSKIKIGQ-SIQNLDCANF 491
Cdd:COG1357  144 LSGADLSGADLSGANLSGANLSGaNLANLEGADL 177
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
73-291 1.61e-06

Antirestriction protein ArdC [Replication, recombination and repair];


Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 50.62  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  73 GSYKMWSEQGFSVRKGEKGIGIythapvtIFIDEEGKEktlreataEEKKKIKSGELSSRRIeHFKKGY-VFDVSQTtat 151
Cdd:COG4227   75 LTFKQAKELGGQVRKGEKGTLV-------VYYKRFEKE--------DEDEEDEEGEEVERRI-PFLKAYtVFNAEQI--- 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 152 eEDLPKIFPNRvwnfkVDEETNLDQLERgVDTLANELGISIkdmresmvgELGSARgAYfqYVDGTEEIAL----NFRNS 227
Cdd:COG4227  136 -DGLPEEYYPL-----PEPLPESERIER-AEAFIAATGADI---------RHGGDR-AF--YSPSTDRIQMppreQFKDA 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498415829 228 rtQNI-ATSIHELAHKKMH----NRLEKG----ASYPTEikEFQAELTSFVVCNNYGIDTSdfTIP----YVANWTK 291
Cdd:COG4227  197 --EDYyATLLHELGHWTGHksrlNRDLGGrfgsEAYAFE--ELVAELGSAFLCAELGIAPE--PREnhaaYIASWLK 267
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
389-449 8.26e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.49  E-value: 8.26e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498415829  389 FVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENN-----DFTEMSMYDSTIHGGSMRNSNLKNSTI 449
Cdd:pfam13599   8 FEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCnlrdvDFLEAQLKNAQFSGCNLKNSNFSDVKL 73
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
398-517 1.09e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 43.78  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829 398 NMSNSSFKNTVFEKCNFEFANMENNDFTEmsmydsTIHGGSMRNSNLKNSTIWGTKIDYFNMSNVNLLSTTFEDVDFSKI 477
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSG------ALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGA 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 498415829 478 KIGQSiqNLDCANF-YLSGATAEESkvyqqiNLE--KLNRINF 517
Cdd:COG1357   75 NLTGA--DLSGANLaNLSGANLSGA------NLSgaNLRGANL 109
Peptidase_M78 pfam06114
IrrE N-terminal-like domain; This entry includes the catalytic domain of the protein ImmA, ...
 185-265 1.74e-04

IrrE N-terminal-like domain; This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.


Pssm-ID: 399250  Cd Length: 122  Bit Score: 42.02  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  185 ANELGISIkdMRESmvgeLGSARGAYFQYVDGTEEIALNFRNSRTQNIATSIHELAHKKMH----NRLEKGASYPTEIKE 260
Cdd:pfam06114   1 AERLGIRV--FFLP----LGAEDGDGRRFDRHTPVIFLNENLSPTRQRFTLAHELGHLLLHeggdTLSDQFDFKTAEARE 74


                  ....*
gi 498415829  261 FQAEL 265
Cdd:pfam06114  75 REANI 79
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
388-474 2.79e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 39.95  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  388 RFVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENNDFTEMSMYDSTIHGGSMRNSNLKNSTIwgtkidyfnmSNVNLLST 467
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNL----------KNSNFSDV 71


                  ....*..
gi 498415829  468 TFEDVDF 474
Cdd:pfam13599  72 KLKGADF 78
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 388-425 5.70e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 38.09  E-value: 5.70e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 498415829  388 RFVDCTFDKVNMSNSSFKNTVFEKCNFEFANMENNDFT 425
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
synapt_SV2 TIGR01299
synaptic vesicle protein SV2; This model describes a tightly conserved subfamily of the larger ...
 346-456 1.51e-03

synaptic vesicle protein SV2; This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.


Pssm-ID: 130366 [Multi-domain]  Cd Length: 742  Bit Score: 42.27  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498415829  346 SALKNSFANDGKEVEKKNKIFENQV-----FDRDSYI--FFKNGNFDGYRFVDCTFDKVNMSNSSFKNtvfekCNFEFAN 418
Cdd:TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIhrggeYDNDKFIglKFKSVSFEDSLFEECTFDDVTSSNTFFKN-----CTFIDTL 555

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 498415829  419 MENNDFTEMSMYDSTIHGGSMrnsnLKNSTiwGTKIDY 456
Cdd:TIGR01299 556 FENTDFEEYKFIDSEFQNCSF----LHNKE--GCPIDF 587
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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