|
Name |
Accession |
Description |
Interval |
E-value |
| MobT |
NF041493 |
MobT family relaxase; |
10-372 |
2.11e-109 |
|
MobT family relaxase;
Pssm-ID: 469381 [Multi-domain] Cd Length: 383 Bit Score: 325.36 E-value: 2.11e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 10 MKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLNYYICDKPFYLLVDYLSVRFPTTDALEIIRKV 89
Cdd:NF041493 1 LKEKRLAYGVSQNKLAVAAGITRQYLSDIETGKVTPSEELKETLLEALERFNPDAPLEMLFDYVRIRFPTTDVQHVIEDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 90 LGMKADYFIHYDYGYYGYKEHYAYGEIKVMASDDEHMGVFLELKGAGSRNMEYVLQAQNRDWYSFLNRCLDCGGVIRRFD 169
Cdd:NF041493 81 LKLKMDYMLHEDYGFYSYTEHYVFGDIFVMVSPDEEKGVLLELKGKGCRQFESFLLAQHRSWYDFFMDALVEGGVMKRLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 170 LAINDMCGLLDIPVLSEKYKNGGADCRCKNYENVQGGKLSGKNR--NLASTLYIGSKASTKYFCLYEKQKEQATKK---- 243
Cdd:NF041493 161 LAINDKTGILDIPELTEKCRNEECISVFRSFKSYRSGELVRREEkpDMGNTLYIGSLKSEVYFCIYEKDYEQYVKNgipi 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 244 KHTDIINRFEIRLRDKKAVQAVEELLLTYNPHGLVFYLITDFVQFPDY------------PLWEIFISHD--SLPFEMNP 309
Cdd:NF041493 241 EEAEVKNRFEIRLKNERAYHAVRDLLTYYDAERTAFSIINRYIRFVDKdetkrrsdwktnERWAWFIGENreKLKLTTKP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498419507 310 VPVNMERTLQWLERQVMPSIVMIEEIDRLTGSNYMKMIDECTHLSEKQEMLVEQMCTDIADVI 372
Cdd:NF041493 321 EPYTFERTLNWLARQVAPTLKVAKKLDEINQTDIIKDMIRHAKLTERHEKILEQQTASTEEVI 383
|
|
| NicK |
COG2946 |
DNA relaxase NicK [Replication, recombination and repair]; |
63-368 |
4.44e-73 |
|
DNA relaxase NicK [Replication, recombination and repair];
Pssm-ID: 442189 [Multi-domain] Cd Length: 302 Bit Score: 229.89 E-value: 4.44e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 63 DKPFYLLVDYLSVRFPTTDALE-IIRKVLGMKaDYFIHYDYGYYGYKEHYAYGEI--KVMASDDEHMGVFLELKGAGSRN 139
Cdd:COG2946 5 GSSNSVLIDYLRFTFKETDDLEeILEEILGLK-DYFSHERKGFYGYEESYSLGDIvgFVGFGEGQNGTVLVELSGTGCRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 140 MEYVLQAqnrDWY-SFLNRCLDCGGVIRRFDLAINDMCGLLDIPVLSEKYKNGGADCRCK--NYENVQGGKLSGKNRNla 216
Cdd:COG2946 84 AEEYLEA---GWYdRLFDWLQDPGGKITRIDLAIDDFDGELSIEQAVSKYKKGLFISRGRrpKYELVGTDWENGKGKG-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 217 STLYIGSKASTKYFCLYEKQKEQATKKkhtDIINRFEIRLRDKKAVQAVEELLltyNPHGLVFYLITDFVQFPDYPLWei 296
Cdd:COG2946 159 RTLYIGSRESGKYWRIYEKGKELGDKE---SSWVRFELRLKNEKAVIPVDILL---NPGEYLAGAYNIYARFVDAEPE-- 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498419507 297 fISHDSLPFEMNPVPVNMERTLQWLERQVMPSIVMIEEIDRLTGSNYMK-MIDECTHLSEKQEMLVEQMCTDI 368
Cdd:COG2946 231 -DSNEKIPLTVKPAKISLERTLRWLRRQVGPTLNMLKEIDGLDAEEIVEdLVRDGKKLPKRLEKIIEQQVTDA 302
|
|
| Rep_trans |
pfam02486 |
Replication initiation factor; Plasmid replication is initiated by the replication initiation ... |
163-345 |
6.71e-48 |
|
Replication initiation factor; Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.
Pssm-ID: 426796 Cd Length: 201 Bit Score: 161.35 E-value: 6.71e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 163 GVIRRFDLAINDMCGLLDIPVLSEKYKNGGADCRCKNYENVQGGKLS-GKNRNLASTLYIGSKASTKYFCLYEKQKEQAT 241
Cdd:pfam02486 1 GKITRIDLAIDDFDGELDIEELKKKYRNGLCISRFRRFKYYGSGELVdGEDVGTGKTLYIGSRKSEKYLRIYEKGYEQGD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 242 KKKHT--DIINRFEIRLRDKKAVQAVEELLLTYNPHGLVFYLITDFVQFPD-----------YPLWEIFISH-DSLPFEM 307
Cdd:pfam02486 81 KEGIPveSPWVRYELRLRNERAEIPVDELLYGRGLYEIAFSILNNYLRFIDkeddkksrwktNRWWADFIGTvERIKLTV 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 498419507 308 NPVPVNMERTLQWLERQVMPSIVMIEEIDRLTGSNYMK 345
Cdd:pfam02486 161 KPEEYTLDRTLRWLRRQVAPTLKMLYEADGLNGEDYLQ 198
|
|
| HTH_XRE |
cd00093 |
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
11-58 |
1.82e-08 |
|
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 50.24 E-value: 1.82e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 498419507 11 KNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:cd00093 5 KELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALG 52
|
|
| HTH_XRE |
smart00530 |
Helix-turn-helix XRE-family like proteins; |
9-58 |
3.46e-08 |
|
Helix-turn-helix XRE-family like proteins;
Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 49.44 E-value: 3.46e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 498419507 9 EMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:smart00530 1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALG 50
|
|
| couple_hipB |
TIGR03070 |
transcriptional regulator, y4mF family; Members of this family belong to a clade of ... |
5-59 |
1.10e-05 |
|
transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]
Pssm-ID: 213767 [Multi-domain] Cd Length: 58 Bit Score: 42.65 E-value: 1.10e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 498419507 5 EFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLNY 59
Cdd:TIGR03070 2 QIGILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVRLDKVLRVLDALGL 56
|
|
| PRK04140 |
PRK04140 |
transcriptional regulator; |
10-49 |
9.86e-05 |
|
transcriptional regulator;
Pssm-ID: 235224 [Multi-domain] Cd Length: 317 Bit Score: 43.69 E-value: 9.86e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 498419507 10 MKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKET 49
Cdd:PRK04140 131 LREAREELGLSLGELASELGVSRRTISKYENGGMNASIEV 170
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MobT |
NF041493 |
MobT family relaxase; |
10-372 |
2.11e-109 |
|
MobT family relaxase;
Pssm-ID: 469381 [Multi-domain] Cd Length: 383 Bit Score: 325.36 E-value: 2.11e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 10 MKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLNYYICDKPFYLLVDYLSVRFPTTDALEIIRKV 89
Cdd:NF041493 1 LKEKRLAYGVSQNKLAVAAGITRQYLSDIETGKVTPSEELKETLLEALERFNPDAPLEMLFDYVRIRFPTTDVQHVIEDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 90 LGMKADYFIHYDYGYYGYKEHYAYGEIKVMASDDEHMGVFLELKGAGSRNMEYVLQAQNRDWYSFLNRCLDCGGVIRRFD 169
Cdd:NF041493 81 LKLKMDYMLHEDYGFYSYTEHYVFGDIFVMVSPDEEKGVLLELKGKGCRQFESFLLAQHRSWYDFFMDALVEGGVMKRLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 170 LAINDMCGLLDIPVLSEKYKNGGADCRCKNYENVQGGKLSGKNR--NLASTLYIGSKASTKYFCLYEKQKEQATKK---- 243
Cdd:NF041493 161 LAINDKTGILDIPELTEKCRNEECISVFRSFKSYRSGELVRREEkpDMGNTLYIGSLKSEVYFCIYEKDYEQYVKNgipi 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 244 KHTDIINRFEIRLRDKKAVQAVEELLLTYNPHGLVFYLITDFVQFPDY------------PLWEIFISHD--SLPFEMNP 309
Cdd:NF041493 241 EEAEVKNRFEIRLKNERAYHAVRDLLTYYDAERTAFSIINRYIRFVDKdetkrrsdwktnERWAWFIGENreKLKLTTKP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498419507 310 VPVNMERTLQWLERQVMPSIVMIEEIDRLTGSNYMKMIDECTHLSEKQEMLVEQMCTDIADVI 372
Cdd:NF041493 321 EPYTFERTLNWLARQVAPTLKVAKKLDEINQTDIIKDMIRHAKLTERHEKILEQQTASTEEVI 383
|
|
| NicK |
COG2946 |
DNA relaxase NicK [Replication, recombination and repair]; |
63-368 |
4.44e-73 |
|
DNA relaxase NicK [Replication, recombination and repair];
Pssm-ID: 442189 [Multi-domain] Cd Length: 302 Bit Score: 229.89 E-value: 4.44e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 63 DKPFYLLVDYLSVRFPTTDALE-IIRKVLGMKaDYFIHYDYGYYGYKEHYAYGEI--KVMASDDEHMGVFLELKGAGSRN 139
Cdd:COG2946 5 GSSNSVLIDYLRFTFKETDDLEeILEEILGLK-DYFSHERKGFYGYEESYSLGDIvgFVGFGEGQNGTVLVELSGTGCRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 140 MEYVLQAqnrDWY-SFLNRCLDCGGVIRRFDLAINDMCGLLDIPVLSEKYKNGGADCRCK--NYENVQGGKLSGKNRNla 216
Cdd:COG2946 84 AEEYLEA---GWYdRLFDWLQDPGGKITRIDLAIDDFDGELSIEQAVSKYKKGLFISRGRrpKYELVGTDWENGKGKG-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 217 STLYIGSKASTKYFCLYEKQKEQATKKkhtDIINRFEIRLRDKKAVQAVEELLltyNPHGLVFYLITDFVQFPDYPLWei 296
Cdd:COG2946 159 RTLYIGSRESGKYWRIYEKGKELGDKE---SSWVRFELRLKNEKAVIPVDILL---NPGEYLAGAYNIYARFVDAEPE-- 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498419507 297 fISHDSLPFEMNPVPVNMERTLQWLERQVMPSIVMIEEIDRLTGSNYMK-MIDECTHLSEKQEMLVEQMCTDI 368
Cdd:COG2946 231 -DSNEKIPLTVKPAKISLERTLRWLRRQVGPTLNMLKEIDGLDAEEIVEdLVRDGKKLPKRLEKIIEQQVTDA 302
|
|
| Rep_trans |
pfam02486 |
Replication initiation factor; Plasmid replication is initiated by the replication initiation ... |
163-345 |
6.71e-48 |
|
Replication initiation factor; Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.
Pssm-ID: 426796 Cd Length: 201 Bit Score: 161.35 E-value: 6.71e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 163 GVIRRFDLAINDMCGLLDIPVLSEKYKNGGADCRCKNYENVQGGKLS-GKNRNLASTLYIGSKASTKYFCLYEKQKEQAT 241
Cdd:pfam02486 1 GKITRIDLAIDDFDGELDIEELKKKYRNGLCISRFRRFKYYGSGELVdGEDVGTGKTLYIGSRKSEKYLRIYEKGYEQGD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 242 KKKHT--DIINRFEIRLRDKKAVQAVEELLLTYNPHGLVFYLITDFVQFPD-----------YPLWEIFISH-DSLPFEM 307
Cdd:pfam02486 81 KEGIPveSPWVRYELRLRNERAEIPVDELLYGRGLYEIAFSILNNYLRFIDkeddkksrwktNRWWADFIGTvERIKLTV 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 498419507 308 NPVPVNMERTLQWLERQVMPSIVMIEEIDRLTGSNYMK 345
Cdd:pfam02486 161 KPEEYTLDRTLRWLRRQVAPTLKMLYEADGLNGEDYLQ 198
|
|
| Rol_Rep_N |
pfam18106 |
Rolling Circle replication initiation protein N-terminal domain; This is the N-terminal domain ... |
68-157 |
5.08e-33 |
|
Rolling Circle replication initiation protein N-terminal domain; This is the N-terminal domain of the Rolling Circle Replication Initiator Protein (Rep) from Geobacillus stearothermophilus. This protein acts on plasmids from family pT181 to initiate replication, recruit a helicase to the site of initiation and terminate replication after DNA synthesis. These proteins possess a unique active site and a catalytically essential metal ion is bound in a distinct manner from other rolling circle Reps.
Pssm-ID: 465652 Cd Length: 92 Bit Score: 118.45 E-value: 5.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 68 LLVDYLSVRFPTTDALEIIRKVLGMKADYFIHYDYGYYGYKEHYAYGEIKVMAS-DDEHMGVFLELKGAGSRNMEYVLQA 146
Cdd:pfam18106 2 ALIDYLRIRFKTHDPDEVIEDILGIPPDFFVLEPRGFYGYEGTYSFGDIKVFYSpNDDNMGVLIELSGQGCREFESFLEA 81
|
90
....*....|.
gi 498419507 147 QNRDWYSFLNR 157
Cdd:pfam18106 82 QGRTWYDFFER 92
|
|
| HTH_XRE |
cd00093 |
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
11-58 |
1.82e-08 |
|
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 50.24 E-value: 1.82e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 498419507 11 KNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:cd00093 5 KELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALG 52
|
|
| HTH_XRE |
smart00530 |
Helix-turn-helix XRE-family like proteins; |
9-58 |
3.46e-08 |
|
Helix-turn-helix XRE-family like proteins;
Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 49.44 E-value: 3.46e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 498419507 9 EMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:smart00530 1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALG 50
|
|
| HipB |
COG1396 |
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
1-58 |
1.36e-07 |
|
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 48.84 E-value: 1.36e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 498419507 1 MNNL--EFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:COG1396 1 MSTLkkALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLETLLKLAKALG 60
|
|
| XRE |
COG1476 |
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
9-58 |
3.00e-07 |
|
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 47.15 E-value: 3.00e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 498419507 9 EMKNK----RLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:COG1476 4 KLGNRlkelRKERGLTQEELAELLGVSRQTISAIENGKYNPSLELALKIARALG 57
|
|
| aMBF1 |
COG1813 |
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
5-58 |
3.09e-06 |
|
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 44.54 E-value: 3.09e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 498419507 5 EFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:COG1813 12 DYGERIREAREARGLSQEELAEKLGVSESTIRRIERGEATPSLDTLRKLEKALG 65
|
|
| HTH_3 |
pfam01381 |
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
10-59 |
3.47e-06 |
|
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.
Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 43.68 E-value: 3.47e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 498419507 10 MKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLNY 59
Cdd:pfam01381 1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGV 50
|
|
| couple_hipB |
TIGR03070 |
transcriptional regulator, y4mF family; Members of this family belong to a clade of ... |
5-59 |
1.10e-05 |
|
transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]
Pssm-ID: 213767 [Multi-domain] Cd Length: 58 Bit Score: 42.65 E-value: 1.10e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 498419507 5 EFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLNY 59
Cdd:TIGR03070 2 QIGILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVRLDKVLRVLDALGL 56
|
|
| COG1395 |
COG1395 |
Predicted transcriptional regulator [Transcription]; |
10-49 |
1.87e-05 |
|
Predicted transcriptional regulator [Transcription];
Pssm-ID: 441005 [Multi-domain] Cd Length: 313 Bit Score: 45.98 E-value: 1.87e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 498419507 10 MKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKET 49
Cdd:COG1395 132 LRELREERGLSLGELASELGVSRRTISKYERGEMDASIEV 171
|
|
| HTH_31 |
pfam13560 |
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
5-60 |
3.74e-05 |
|
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 40.97 E-value: 3.74e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 498419507 5 EFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETqnIILRCLNYY 60
Cdd:pfam13560 1 ELGARLRRLRERAGLSQEALARRLGVSRSTLSRLETGRRGRPSPA--VVERLARAL 54
|
|
| PRK04140 |
PRK04140 |
transcriptional regulator; |
10-49 |
9.86e-05 |
|
transcriptional regulator;
Pssm-ID: 235224 [Multi-domain] Cd Length: 317 Bit Score: 43.69 E-value: 9.86e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 498419507 10 MKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKET 49
Cdd:PRK04140 131 LREAREELGLSLGELASELGVSRRTISKYENGGMNASIEV 170
|
|
| VapI |
COG3093 |
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ... |
18-49 |
8.64e-04 |
|
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms];
Pssm-ID: 442327 [Multi-domain] Cd Length: 87 Bit Score: 37.87 E-value: 8.64e-04
10 20 30
....*....|....*....|....*....|..
gi 498419507 18 GLSQGELASLTHVSRYSINRFENGKANASKET 49
Cdd:COG3093 22 GLSQTELAKALGVSRQRISEILNGKRAITADT 53
|
|
| AF2118 |
COG3620 |
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
3-58 |
9.06e-04 |
|
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];
Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 38.08 E-value: 9.06e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 498419507 3 NLEFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLN 58
Cdd:COG3620 15 DDTLGEALRLMRKELGLSQLPVAELVGVSQSDILRIESGKRDPTVSTLEKIAEALG 70
|
|
| YiaG |
COG2944 |
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; |
9-46 |
2.40e-03 |
|
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
Pssm-ID: 442187 [Multi-domain] Cd Length: 64 Bit Score: 36.07 E-value: 2.40e-03
10 20 30
....*....|....*....|....*....|....*...
gi 498419507 9 EMKNKRLASGLSQGELASLTHVSRYSINRFENGKANAS 46
Cdd:COG2944 10 EIRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRKPS 47
|
|
| CxxCG_CxxCG_HTH |
TIGR03830 |
putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of ... |
2-59 |
8.03e-03 |
|
putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Pssm-ID: 274805 [Multi-domain] Cd Length: 127 Bit Score: 36.07 E-value: 8.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 498419507 2 NNLEFALEMKNKRLASGLSQGELASLTHVSRYSINRFENGKANASKETQNIILRCLNY 59
Cdd:TIGR03830 62 DGLLTGPEIRRIRKKLGLSQREAAELLGGGVNAFSRYERGEVRPSKALDKLLRLLDKH 119
|
|
| |
