|
Name |
Accession |
Description |
Interval |
E-value |
| MurF |
COG0770 |
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; ... |
1-450 |
0e+00 |
|
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440533 [Multi-domain] Cd Length: 451 Bit Score: 517.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 1 MNFTTTIISRAVQGEVLTENEVTVTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEAekaPEGIAV 79
Cdd:COG0770 1 ILLTLAEIAEATGGRLIGDPDLVVTGVSTDSRKIKPGDLFVALKGERfDGHDFVAQALAKGAAAALVSRPL---PADLPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 80 VLVKDTLLAFQALASYYLLEENPDVIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTEKLIL 159
Cdd:COG0770 78 IVVDDTLKALQQLAAAHRARFNIPVIAITGSNGKTTTKEMLAAVLSTKGKVLATPGNFNNEIGVPLTLLRLPEDHEFAVL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 160 EMGMDHAGEISILSELAEPDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVET 239
Cdd:COG0770 158 EMGMNHPGEIAYLARIARPDIAVITNIGPAHLEGFGSLEGIARAKGEIFEGLPPGGVAVLNADDPLLAALAERAKARVLT 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 240 VGIQKG-ELSATILNEDKGATVFSVDDNG----YQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQW 314
Cdd:COG0770 238 FGLSEDaDVRAEDIELDEDGTRFTLHTPGgeleVTLPLPGRHNVSNALAAAAVALALGLDLEEIAAGLAAFQPVKGRLEV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 315 LKASNGADILSDVYNANPTAMGLVLDTFAKLPTEGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHEIFLYGDEMKgl 394
Cdd:COG0770 318 IEGAGGVTLIDDSYNANPDSMKAALDVLAQLPGGGRRIAVLGDMLELGEESEELHREVGELAAELGIDRLFTVGELAR-- 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 498437141 395 kvALADRYPTLAVHYFSknDKQKMVDTIKNSLHADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:COG0770 396 --AIAEAAGGERAEHFE--DKEELLAALKALLRPGDVVLVKGSRGMGLERVVEALK 447
|
|
| murF |
TIGR01143 |
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the ... |
29-449 |
1.20e-128 |
|
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 273468 [Multi-domain] Cd Length: 417 Bit Score: 378.53 E-value: 1.20e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 29 FDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEaEKAPEGIAVVLVKDTLLAFQALASYYLLEENPDVIAI 107
Cdd:TIGR01143 1 TDSRAIKPGDLFIALKGERfDGHDFVEQALAAGAVAVVVDRE-VGPDNGLPQILVDDTLEALQALARAKRAKFSGKVIGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 108 TGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTEKLILEMGMDHAGEISILSELAEPDVAAITIVG 187
Cdd:TIGR01143 80 TGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 188 EAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEE-RTHSLSQTVETVGIQKGELSA-TILNEDKGATVFSVDD 265
Cdd:TIGR01143 160 PAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFADlAKRLPNRNILSFGFEGGDFVAkDISYSALGSTSFTLVA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 266 NG----YQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKAsNGADILSDVYNANPTAMGLVLDT 341
Cdd:TIGR01143 240 PGgefeVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFEVQTK-NGLTLIDDTYNANPDSMRAALDA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 342 FAKLPteGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHEIFLYGDEMKGLKVALAdryptLAVHYFSknDKQKMVDT 421
Cdd:TIGR01143 319 LARFP--GKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEAAVIYDSFG-----KQGKHFA--DKDELLAF 389
|
410 420
....*....|....*....|....*...
gi 498437141 422 IKNSLHADDSIVLKGSNGMGLTEVVEAL 449
Cdd:TIGR01143 390 LKTLVRKGDVVLVKGSRSVKLEKVVEAL 417
|
|
| PRK11929 |
PRK11929 |
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ... |
24-450 |
7.28e-98 |
|
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;
Pssm-ID: 237025 [Multi-domain] Cd Length: 958 Bit Score: 314.33 E-value: 7.28e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 24 VTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWS-QEAEKAPEGIavvLVKDTLLAFQALASYYLLEEN 101
Cdd:PRK11929 526 AGAVSTDSRSVGRGELFVALRGENfDGHDYLPQAFAAGACAAVVErQVADVDLPQI---VVDDTRAALGRLATAWRARFS 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 102 PDVIAITGSNGKTTTKDMTESVLSQ---KFRTYKTQGNYNNDIGLPYTILHMPEGTEKLILEMGMDHAGEISILSELAEP 178
Cdd:PRK11929 603 LPVVAITGSNGKTTTKEMIAAILAAwqgEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYLAAIAAP 682
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 179 DVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEE-RTHSLSQTVETVGIQKGE------LSATI 251
Cdd:PRK11929 683 TVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIwAKLAGARRVLRFGLQPGAdvyaekIAKDI 762
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 252 LNEDKGATVFSVDDNGYQI----PLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKASNGADILSDV 327
Cdd:PRK11929 763 SVGEAGGTRCQVVTPAGSAevylPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLSCGTRIIDDT 842
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 328 YNANPTAMGLVLDTFAKLPTeGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHEIFLYGDEMKGLKVALADRYPTLAv 407
Cdd:PRK11929 843 YNANPDSMRAAIDVLAELPN-GPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAARDAAAAFGAGARGVC- 920
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 498437141 408 hyfskNDKQKMVDTIKNSLHADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:PRK11929 921 -----ASVDEIIAALRGALPEGDSVLIKGSRFMRLERVVDALS 958
|
|
| Mur_ligase_M |
pfam08245 |
Mur ligase middle domain; |
107-288 |
2.07e-44 |
|
Mur ligase middle domain;
Pssm-ID: 462409 [Multi-domain] Cd Length: 199 Bit Score: 154.00 E-value: 2.07e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 107 ITGSNGKTTTKDMTESVLSQKFRTYKTQG--------NYNNDIGLPYTILHMPE-GTEKLILEMGMDHAGEiSILSELAE 177
Cdd:pfam08245 1 VTGTNGKTTTTELIAAILSLAGGVIGTIGtyigksgnTTNNAIGLPLTLAEMVEaGAEYAVLEVSSHGLGE-GRLSGLLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 178 PDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEP---LLEERTHSLSQTVETVGIQKG-ELSATILN 253
Cdd:pfam08245 80 PDIAVFTNISPDHLDFHGTMENYAKAKAELFEGLPEDGIAVINADDPygaFLIAKLKKAGVRVITYGIEGEaDLRAANIE 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 498437141 254 EDKG---ATVFSVDDNGYQI--PLPGSYNVQNALIAMAIG 288
Cdd:pfam08245 160 LSSDgtsFDLFTVPGGELEIeiPLLGRHNVYNALAAIAAA 199
|
|
| F430_CfbE |
NF033197 |
coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in ... |
104-303 |
9.38e-04 |
|
coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in synthesizing coenzyme F430, which is used in methanogens by coenzyme M reductase. Members of this family are restricted to archaeal methanogens, and resemble (and may be misannotated as) MurD, an enzyme of bacterial cell wall biosynthesis.
Pssm-ID: 467992 [Multi-domain] Cd Length: 419 Bit Score: 41.54 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 104 VIAITGSNGKTTTKDMTESVLSQKFRTYKT-QGNYNNDIGL--------PYTILHMPEgtekLILEMGMDHAG----EIS 170
Cdd:NF033197 94 FIEITGVKGKTTTAELLAHILSDEYVLLHTsRGTERYPEGElsnkgsitPASILNALE----LAEEIGIDDYGflifEVS 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 171 iLSELAEPDVAAITIVGEAH-IENlGSReKIADAKMEITTGLATNGLLVIPADeplleeRTHSLSQTVETVGIQKGELSA 249
Cdd:NF033197 170 -LGGTGAGDVGIITNILEDYpIAG-GKR-SASAAKLQSLKNAKVGSINVADLG------IYINGKNKLVITVAGVEILSK 240
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 498437141 250 TILNEDKGATVFSVDDNgyqipLPGSYNVQNALIAMAIGRWFGLENDEIFQGLA 303
Cdd:NF033197 241 YPLRFKYGNTEFEFNPL-----LFGPHYRENSLFAIEAALNLGVDPEDIISALK 289
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MurF |
COG0770 |
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; ... |
1-450 |
0e+00 |
|
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440533 [Multi-domain] Cd Length: 451 Bit Score: 517.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 1 MNFTTTIISRAVQGEVLTENEVTVTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEAekaPEGIAV 79
Cdd:COG0770 1 ILLTLAEIAEATGGRLIGDPDLVVTGVSTDSRKIKPGDLFVALKGERfDGHDFVAQALAKGAAAALVSRPL---PADLPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 80 VLVKDTLLAFQALASYYLLEENPDVIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTEKLIL 159
Cdd:COG0770 78 IVVDDTLKALQQLAAAHRARFNIPVIAITGSNGKTTTKEMLAAVLSTKGKVLATPGNFNNEIGVPLTLLRLPEDHEFAVL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 160 EMGMDHAGEISILSELAEPDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVET 239
Cdd:COG0770 158 EMGMNHPGEIAYLARIARPDIAVITNIGPAHLEGFGSLEGIARAKGEIFEGLPPGGVAVLNADDPLLAALAERAKARVLT 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 240 VGIQKG-ELSATILNEDKGATVFSVDDNG----YQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQW 314
Cdd:COG0770 238 FGLSEDaDVRAEDIELDEDGTRFTLHTPGgeleVTLPLPGRHNVSNALAAAAVALALGLDLEEIAAGLAAFQPVKGRLEV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 315 LKASNGADILSDVYNANPTAMGLVLDTFAKLPTEGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHEIFLYGDEMKgl 394
Cdd:COG0770 318 IEGAGGVTLIDDSYNANPDSMKAALDVLAQLPGGGRRIAVLGDMLELGEESEELHREVGELAAELGIDRLFTVGELAR-- 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 498437141 395 kvALADRYPTLAVHYFSknDKQKMVDTIKNSLHADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:COG0770 396 --AIAEAAGGERAEHFE--DKEELLAALKALLRPGDVVLVKGSRGMGLERVVEALK 447
|
|
| murF |
TIGR01143 |
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the ... |
29-449 |
1.20e-128 |
|
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 273468 [Multi-domain] Cd Length: 417 Bit Score: 378.53 E-value: 1.20e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 29 FDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEaEKAPEGIAVVLVKDTLLAFQALASYYLLEENPDVIAI 107
Cdd:TIGR01143 1 TDSRAIKPGDLFIALKGERfDGHDFVEQALAAGAVAVVVDRE-VGPDNGLPQILVDDTLEALQALARAKRAKFSGKVIGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 108 TGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTEKLILEMGMDHAGEISILSELAEPDVAAITIVG 187
Cdd:TIGR01143 80 TGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 188 EAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEE-RTHSLSQTVETVGIQKGELSA-TILNEDKGATVFSVDD 265
Cdd:TIGR01143 160 PAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFADlAKRLPNRNILSFGFEGGDFVAkDISYSALGSTSFTLVA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 266 NG----YQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKAsNGADILSDVYNANPTAMGLVLDT 341
Cdd:TIGR01143 240 PGgefeVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFEVQTK-NGLTLIDDTYNANPDSMRAALDA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 342 FAKLPteGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHEIFLYGDEMKGLKVALAdryptLAVHYFSknDKQKMVDT 421
Cdd:TIGR01143 319 LARFP--GKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEAAVIYDSFG-----KQGKHFA--DKDELLAF 389
|
410 420
....*....|....*....|....*...
gi 498437141 422 IKNSLHADDSIVLKGSNGMGLTEVVEAL 449
Cdd:TIGR01143 390 LKTLVRKGDVVLVKGSRSVKLEKVVEAL 417
|
|
| PRK11929 |
PRK11929 |
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ... |
24-450 |
7.28e-98 |
|
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;
Pssm-ID: 237025 [Multi-domain] Cd Length: 958 Bit Score: 314.33 E-value: 7.28e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 24 VTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWS-QEAEKAPEGIavvLVKDTLLAFQALASYYLLEEN 101
Cdd:PRK11929 526 AGAVSTDSRSVGRGELFVALRGENfDGHDYLPQAFAAGACAAVVErQVADVDLPQI---VVDDTRAALGRLATAWRARFS 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 102 PDVIAITGSNGKTTTKDMTESVLSQ---KFRTYKTQGNYNNDIGLPYTILHMPEGTEKLILEMGMDHAGEISILSELAEP 178
Cdd:PRK11929 603 LPVVAITGSNGKTTTKEMIAAILAAwqgEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYLAAIAAP 682
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 179 DVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEE-RTHSLSQTVETVGIQKGE------LSATI 251
Cdd:PRK11929 683 TVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIwAKLAGARRVLRFGLQPGAdvyaekIAKDI 762
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 252 LNEDKGATVFSVDDNGYQI----PLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKASNGADILSDV 327
Cdd:PRK11929 763 SVGEAGGTRCQVVTPAGSAevylPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLSCGTRIIDDT 842
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 328 YNANPTAMGLVLDTFAKLPTeGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHEIFLYGDEMKGLKVALADRYPTLAv 407
Cdd:PRK11929 843 YNANPDSMRAAIDVLAELPN-GPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAARDAAAAFGAGARGVC- 920
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 498437141 408 hyfskNDKQKMVDTIKNSLHADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:PRK11929 921 -----ASVDEIIAALRGALPEGDSVLIKGSRFMRLERVVDALS 958
|
|
| murF |
PRK10773 |
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed |
5-450 |
3.26e-68 |
|
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Pssm-ID: 182718 [Multi-domain] Cd Length: 453 Bit Score: 224.14 E-value: 3.26e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 5 TTIISRAVQGEVLTENEVTVtgvefDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQeaeKAPEGIAVVLVK 83
Cdd:PRK10773 10 ADILNGELQGADITIDAVTT-----DTRKVTPGCLFVALKGERfDAHDFADDAKAAGAGALLVSR---PLDIDLPQLVVK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 84 DTLLAFQALASYYLLEENPDVIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTEKLILEMGM 163
Cdd:PRK10773 82 DTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLLRLTPEHDYAVIELGA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 164 DHAGEISILSELAEPDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSL-SQTVETVGI 242
Cdd:PRK10773 162 NHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIgSKTVWRFSP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 243 QKGE---LSATILNEDKGATVFS----VDDNGYQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWL 315
Cdd:PRK10773 242 NAANsvdFTATNIHVTSHGTEFTlhtpTGSVDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLANLKAVPGRLFPI 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 316 KASNGADILSDVYNANPTAMGLVLDTFAKLPteGRRLAVLADMLELGADSFSLHTSMVEHIndqdfheiflygdemkglK 395
Cdd:PRK10773 322 QLAEGQLLLDDSYNANVGSMTAAAQVLAEMP--GYRVMVVGDMAELGAESEACHRQVGEAA------------------K 381
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 498437141 396 VALADRypTLAVHYFSK------------NDKQKMVDTIKNSL--HADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:PRK10773 382 AAGIDK--VLSVGKLSHaiseasgvgehfADKTALIARLKALLaeHQVITILVKGSRSAAMEEVVRALQ 448
|
|
| PRK14093 |
PRK14093 |
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; ... |
3-450 |
3.89e-66 |
|
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Pssm-ID: 184501 [Multi-domain] Cd Length: 479 Bit Score: 219.65 E-value: 3.89e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 3 FTTTIISRAVQGEVLTENEVTVTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGAT-ATLWSQEAEKAPEGIAVV 80
Cdd:PRK14093 7 WTSDAMAEAMGATRSGALPRDVTGISIDSRTLAPGDAYFAIKGDVhDGHAFVAAALKAGAAlAVVERAQRDKFAADAPLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 81 LVKDTLLAFQALASYYLLEENPDVIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTEKLILE 160
Cdd:PRK14093 87 VVDDVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADARFAVFE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 161 MGMDHAGEISILSELAEPDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEErthsLSQTVETV 240
Cdd:PRK14093 167 IGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDR----LAASARAA 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 241 GIQK-----------GELSATILNEDKGATVFSV--DDNGYQIPLPGSYNVQNALIAMAIGRWFGleNDEIFQGLAYVQV 307
Cdd:PRK14093 243 GIARivsfgadekadARLLDVALHADCSAVHADIlgHDVTYKLGMPGRHIAMNSLAVLAAAELAG--ADLALAALALSQV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 308 TQN-----RTQWLKASNGADILSDVYNANPTAMGLVLDTFAKLP--TEGRRLAVLADMLELGADSFSLHTSMVEHINDQD 380
Cdd:PRK14093 321 QPAagrgvRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPvgPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANA 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 498437141 381 FHEIFLYGDEMKGLKVALADR----YPTLAVHYFSKndkqkmvdtIKNSLHADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:PRK14093 401 IDLVFCCGPLMRNLWDALSSGkrggYAEDAAALESQ---------VVAAIRAGDVIMVKGSLGSRMKTIVTALE 465
|
|
| PRK11930 |
PRK11930 |
putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine ... |
1-450 |
9.97e-52 |
|
putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Pssm-ID: 237026 [Multi-domain] Cd Length: 822 Bit Score: 186.70 E-value: 9.97e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 1 MNFTTTIISRAVQGEVLTENEVTVTGVEFDSRKIKAGD--LFVPLQGT-NDGHEFVAKAIENGA-TATLWSQEAEKAPEG 76
Cdd:PRK11930 1 MSYTLESISGILGAEGLGDKDAIIDQILTDSRSLSFPEntLFFALKGErNDGHRYIQELYEKGVrNFVVSEEKHPEESYP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 77 IAVVL-VKDTLLAFQALASYYLLEENPDVIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNYNNDIGLPYTILHMPEGTE 155
Cdd:PRK11930 81 DANFLkVKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 156 KLILEMGMDHAGEISILSELAEPDVAAITIVGEAHIENLGSREKIA--------DAKMEITTGLATNGLLVIPADEPLLE 227
Cdd:PRK11930 161 LGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKImeklklfkDCDVIIYNGDNELISSCITKSNLTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 228 ERTHSLSQTVETVGIQKGELSatilnedKGATVFSVD----DNGYQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLA 303
Cdd:PRK11930 241 LISWSRKDPEAPLYIPFVEKK-------EDHTVISYTykgeDFHFEIPFIDDASIENLIHCIAVLLYLGYSADQIQERMA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 304 YVQVTQNRTQWLKASNGADILSDVYNANPTAMGLVLDTFAKLPTEGRRLAVLADMLELGADSFSLHTSMVEHINDQDFHE 383
Cdd:PRK11930 314 RLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLISKRGIDR 393
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498437141 384 IFLYGDEMKglkvALADRYPTLAVHYFskNDKQKMVDTIKNSLHADDSIVLKGSNGMGLTEVVEALQ 450
Cdd:PRK11930 394 LIGIGEEIS----SEASKFEGTEKEFF--KTTEAFLKSFAFLKFRNELILVKGARKFEFEQITELLE 454
|
|
| Mur_ligase_M |
pfam08245 |
Mur ligase middle domain; |
107-288 |
2.07e-44 |
|
Mur ligase middle domain;
Pssm-ID: 462409 [Multi-domain] Cd Length: 199 Bit Score: 154.00 E-value: 2.07e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 107 ITGSNGKTTTKDMTESVLSQKFRTYKTQG--------NYNNDIGLPYTILHMPE-GTEKLILEMGMDHAGEiSILSELAE 177
Cdd:pfam08245 1 VTGTNGKTTTTELIAAILSLAGGVIGTIGtyigksgnTTNNAIGLPLTLAEMVEaGAEYAVLEVSSHGLGE-GRLSGLLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 178 PDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEP---LLEERTHSLSQTVETVGIQKG-ELSATILN 253
Cdd:pfam08245 80 PDIAVFTNISPDHLDFHGTMENYAKAKAELFEGLPEDGIAVINADDPygaFLIAKLKKAGVRVITYGIEGEaDLRAANIE 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 498437141 254 EDKG---ATVFSVDDNGYQI--PLPGSYNVQNALIAMAIG 288
Cdd:pfam08245 160 LSSDgtsFDLFTVPGGELEIeiPLLGRHNVYNALAAIAAA 199
|
|
| MurE |
COG0769 |
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; ... |
26-350 |
4.21e-38 |
|
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl tripeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440532 [Multi-domain] Cd Length: 459 Bit Score: 144.07 E-value: 4.21e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 26 GVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEAEKAPEGIAVVLVKDTLLAFQALAS-YYlleENPD 103
Cdd:COG0769 1 GITYDSRKVKPGDLFVALPGARvDGHDFIAQAIARGAVAVVTEAPGALLAAGVPVIVVPDPRAALALLAAaFY---GHPS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 104 ----VIAITGSNGKTTTKDMTESVLSQ-KFRTyktqG----NYNNDIGLPYTILHM-PEGTE--KLILEM---GMDHAG- 167
Cdd:COG0769 78 qklkLIGVTGTNGKTTTTYLLAQILRAlGKKT----GligtVGNGIGGELIPSSLTtPEALDlqRLLAEMvdaGVTHVVm 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 168 EISilSE-LA-------EPDVAAITivgeahieNL--------GSREKIADAKMEITTGLATNGLLVIPADEPLLEERTH 231
Cdd:COG0769 154 EVS--SHaLDqgrvdgvRFDVAVFT--------NLtrdhldyhGTMEAYFAAKARLFDQLGPGGAAVINADDPYGRRLAA 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 232 SLSQTVETVGIQKG-ELSATILNEDKGATVFSVDDNG----YQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQ 306
Cdd:COG0769 224 AAPARVITYGLKADaDLRATDIELSADGTRFTLVTPGgeveVRLPLIGRFNVYNALAAIAAALALGIDLEEILAALEKLK 303
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 498437141 307 VTQNRTQWLKASNGADILSDvYNANPTAMGLVLDTFAKLpTEGR 350
Cdd:COG0769 304 GVPGRMERVDGGQGPTVIVD-YAHTPDALENVLEALRPH-TKGR 345
|
|
| murE |
PRK00139 |
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional |
22-350 |
1.67e-28 |
|
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Pssm-ID: 234660 [Multi-domain] Cd Length: 460 Bit Score: 117.16 E-value: 1.67e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 22 VTVTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEAEkAPEGIAVVLVKDTLLAFQALASYY--LL 98
Cdd:PRK00139 13 VEITGLTYDSRKVKPGDLFVALPGHKvDGRDFIAQAIANGAAAVVAEADGE-AGTGVPVIIVPDLRKALALLAAAFygHP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 99 EENPDVIAITGSNGKTTTKDMTESVLSQKfrTYK-----TQGNYNNDiGLPYTILHMPEGTE-----KLILEMGMDH-AG 167
Cdd:PRK00139 92 SDKLKLIGVTGTNGKTTTAYLLAQILRLL--GEKtaligTLGNGIGG-ELIPSGLTTPDALDlqrllAELVDAGVTYaAM 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 168 EIS----ILSELA--EPDVAAITivgeahieNL--------GSREKIADAKMEITTGLatNGLLVIPADEPlLEERTHSL 233
Cdd:PRK00139 169 EVSshalDQGRVDglKFDVAVFT--------NLsrdhldyhGTMEDYLAAKARLFSEL--GLAAVINADDE-VGRRLLAL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 234 SQTVeTVGIQKGELSATILNEDKGATVFSVDDNgYQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQ 313
Cdd:PRK00139 238 PDAY-AVSMAGADLRATDVEYTDSGQTFTLVTE-VESPLIGRFNVSNLLAALAALLALGVPLEDALAALAKLQGVPGRME 315
|
330 340 350
....*....|....*....|....*....|....*..
gi 498437141 314 WLKASNGADILSDvYNANPTAMGLVLDTfAKLPTEGR 350
Cdd:PRK00139 316 RVDAGQGPLVIVD-YAHTPDALEKVLEA-LRPHAKGR 350
|
|
| murE |
TIGR01085 |
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, ... |
23-355 |
2.01e-26 |
|
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 273435 [Multi-domain] Cd Length: 464 Bit Score: 110.87 E-value: 2.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 23 TVTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEAEKAPEGIAVVLVKDT--LLAFQALASYYLLE 99
Cdd:TIGR01085 3 EVTGLTLDSREVKPGDLFVAIKGTHvDGHDFIHDAIANGAVAVVVERDVDFYVAPVPVIIVPDLrhALSSLAAAFYGHPS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 100 ENPDVIAITGSNGKTTTKDMTESVLSQKFR------TYKTQGNYNNDIGLPYTiLHMPEGTE--KLILEMGMDHAG---- 167
Cdd:TIGR01085 83 KKLKVIGVTGTNGKTTTTSLIAQLLRLLGKktgligTIGYRLGGNDLIKNPAA-LTTPEALTlqSTLAEMVEAGAQyavm 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 168 EIS----ILSELAEP--DVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPL---LEERTHsLSQTVE 238
Cdd:TIGR01085 162 EVSshalAQGRVRGVrfDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYgaqFVKRLP-KDITVS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 239 TVGiQKGELSATilneDKGATVFSVDDNGYQI-------------PLPGSYNVQNALIAMAIG-RWFGLENDEIFQGLAY 304
Cdd:TIGR01085 241 AIT-QPADGRAQ----DIKITDSGYSFEGQQFtfetpageghlhtPLIGRFNVYNLLAALATLlHLGGIDLEDIVAALEK 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 498437141 305 VQVTQNRTQWLKASNGADILSDvYNANPTAMGLVLDTFAKLPTegRRLAVL 355
Cdd:TIGR01085 316 FRGVPGRMELVDGGQKFLVIVD-YAHTPDALEKALRTLRKHKD--GRLIVV 363
|
|
| PRK11929 |
PRK11929 |
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ... |
24-355 |
1.55e-25 |
|
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;
Pssm-ID: 237025 [Multi-domain] Cd Length: 958 Bit Score: 110.18 E-value: 1.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 24 VTGVEFDSRKIKAGDLFVPLQGT-NDGHEFVAKAIENGATATLWSQEAE--KAPEGIAVVLVKDTLLAFQALASYYLLEE 100
Cdd:PRK11929 29 TADLRLDSREVQPGDLFVACRGAaSDGRAFIDQALARGAAAVLVEAEGEdqVAAADALVLPVADLRKALGELAARWYGRP 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 101 NPD--VIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNYNN-----DIGLPYT-----ILH-----MPE-GTEKLILEMG 162
Cdd:PRK11929 109 SEQlsLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGArldgrLIPGSLTtpdaiILHrilarMRAaGADAVAMEAS 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 163 mDHAGEISILSELaEPDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVEtVGI 242
Cdd:PRK11929 189 -SHGLEQGRLDGL-RIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLK-VGY 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 243 QKGELSATILNEDKGAT------VFSVDDNGYQ--IPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQW 314
Cdd:PRK11929 266 SPQNAGADVQARDLRATahgqvfTLATPDGSYQlvTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSPVPGRMER 345
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 498437141 315 LKAS---NGADILSDvYNANPTAMGLVLDTFAKLP-TEGRRLAVL 355
Cdd:PRK11929 346 VGPTagaQGPLVVVD-YAHTPDALAKALTALRPVAqARNGRLVCV 389
|
|
| MurD |
COG0771 |
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ... |
15-320 |
1.51e-24 |
|
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440534 [Multi-domain] Cd Length: 445 Bit Score: 105.16 E-value: 1.51e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 15 EVLTENEVTVTGVEFDSRKIKAGDLFV--PlqGTNDGHEFVAKAIENGATatLWSqEAEkapegiavvlvkdtlLAFQAL 92
Cdd:COG0771 44 AELEAPGVEVVLGEHPEELLDGADLVVksP--GIPPDHPLLKAARAAGIP--VIG-EIE---------------LAYRLS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 93 asyylleeNPDVIAITGSNGKTTTKDMTESVLSQKFRtyKTQ--GNynndIGLPY-TILHMPEGTEKLILEmgmdhagei 169
Cdd:COG0771 104 --------PAPIIAITGTNGKTTTTTLIGHILKAAGL--RVAvgGN----IGTPLlDLLLEPEPPDVYVLE--------- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 170 siLS----ELAE---PDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVETVGI 242
Cdd:COG0771 161 --LSsfqlETTPslrPDVAVILNITPDHLDRHGSMEAYAAAKARIFANQTPDDYAVLNADDPLTRALAEEAKARVVPFSL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 243 QKGELSATILNEDK------GATVFSVDDngyqIPLPGSYNVQNALIAMAIGRWFGLENDEI------FQGLAyvqvtqN 310
Cdd:COG0771 239 KEPLEGGAGLEDGKlvdrasGEELLPVDD----LRLPGRHNLENALAALAAARALGVPPEAIrealrsFKGLP------H 308
|
330
....*....|
gi 498437141 311 RTQWLKASNG 320
Cdd:COG0771 309 RLEFVAEING 318
|
|
| murD |
TIGR01087 |
UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation ... |
104-320 |
3.58e-16 |
|
UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 273436 [Multi-domain] Cd Length: 433 Bit Score: 80.08 E-value: 3.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 104 VIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNynndIGLPYTILHMPEGTEKLILEM----GMDhageisilSELAEPD 179
Cdd:TIGR01087 104 VVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGN----IGTPALEVLDQEGAELYVLELssfqLET--------TESLRPE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 180 VAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVETVGIQKgELSATILNEDKGAT 259
Cdd:TIGR01087 172 IALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFSVEK-DAERGLCIRDGGLY 250
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 498437141 260 VFsvdDNGYQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKASNG 320
Cdd:TIGR01087 251 LK---PNDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNG 308
|
|
| MurC |
COG0773 |
UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall ... |
104-449 |
1.59e-12 |
|
UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440536 [Multi-domain] Cd Length: 451 Bit Score: 68.94 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 104 VIAITGSNGKTTTKDMTESVLSQkfrtyktqgnynndIGLPYTIL--HMPEGTEklilemGMDHAGEisilSEL--AE-- 177
Cdd:COG0773 106 SIAVAGTHGKTTTTSMLAHILEE--------------AGLDPTFLigGILNNFG------TNARLGD----GDYfvAEad 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 178 ----------PDVAAIT-IvgEA-HIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVETVGIQK- 244
Cdd:COG0773 162 esdgsflhysPDIAVVTnI--EAdHLDIYGDLEAIKEAFHEFARNVPFYGLLVLCADDPGLRELLPRCGRPVITYGFSEd 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 245 GELSATILNEDKGATVFSVDDNG-----YQIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKASN 319
Cdd:COG0773 240 ADYRAENIRIDGGGSTFDVLRRGeelgeVELNLPGRHNVLNALAAIAVALELGVDPEAIAEALASFKGVKRRFELKGEVG 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 320 GADILSDvYNANPTAMGLVLDTFAKLPTEGRRLAVL--------ADMLELGADSFSlhtsmvehindqDFHEIFLYG--- 388
Cdd:COG0773 320 GVTVIDD-YAHHPTEIAATLAAAREKYPDRRLVAVFqphrysrtRDFLDEFAEALS------------LADEVILLDiya 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 498437141 389 ---DEMKGLKVA-LADRYPTLAVHYFSKNDKQKMVDTIKNSLHADDSIVLKGsNGmGLTEVVEAL 449
Cdd:COG0773 387 areKPIPGVSSEdLAEAIRKRGKDVVYVPDLDELVEALAEIARPGDVVLTMG-AG-DIGGLGEKL 449
|
|
| murD |
PRK14106 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional |
104-334 |
3.74e-12 |
|
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Pssm-ID: 184511 [Multi-domain] Cd Length: 450 Bit Score: 67.69 E-value: 3.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 104 VIAITGSNGKTTTKDMTESVLSQKFRTYKTQGNynndIGLPytilhmpegtekLILEMgMDHAGEISILSELA------- 176
Cdd:PRK14106 110 IVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN----IGYP------------LIDAV-EEYGEDDIIVAEVSsfqleti 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 177 ---EPDVAAITIVGEAHIENLGSREKIADAKMEITTGLATNGLLVIPADEPLLEE-------------RTHSLSqtvETV 240
Cdd:PRK14106 173 kefKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSlakkakarviffsRKSLLE---EGV 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 241 GIQKGELsaTILNEDKGATVFSVDDngyqIPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKASNG 320
Cdd:PRK14106 250 FVKNGKI--VISLGGKEEEVIDIDE----IFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAEING 323
|
250
....*....|....
gi 498437141 321 ADILSDVYNANPTA 334
Cdd:PRK14106 324 VKFINDSKGTNPDA 337
|
|
| murC |
TIGR01082 |
UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial ... |
103-440 |
5.69e-12 |
|
UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 273433 [Multi-domain] Cd Length: 448 Bit Score: 67.33 E-value: 5.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 103 DVIAITGSNGKTTTKDMTESVLSQkfrtyktqgnynndIGLPYTIL---HMPEGTEklilemGMDHAGEISILSELAE-- 177
Cdd:TIGR01082 100 HSIAVAGTHGKTTTTAMIAVILKE--------------AGLDPTVVvggLVKEAGT------NARLGSGEYLVAEADEsd 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 178 -------PDVAAITIVGEAHIENLGSR-EKIADAKMEITTGLATNGLLVIPADEPLLEErTHSLSQTVETVGIQKGELS- 248
Cdd:TIGR01082 160 asflhlqPNVAIVTNIEPDHLDTYGSSfERLKAAFEKFIHNLPFYGLAVICADDPVLRE-LVPKATEQVITYGGSGEDAd 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 249 --ATILNEDKGATVFSVD--DNGYQ---IPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQWLKASNGA 321
Cdd:TIGR01082 239 yrAENIQQSGAEGKFSVRgkGKLYLeftLNLPGRHNVLNALAAIAVALELGIDFEAILRALANFQGVKRRFEILGEFGGV 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 322 dILSDVYNANPTAMGLVLDTfAKLPTEGRRLAVLadmlelgadsFSLHTSMVEHINDQDFHEIFLYGDEMKGLKVALADR 401
Cdd:TIGR01082 319 -LLIDDYAHHPTEIKATLKA-ARQGYPDKRIVVV----------FQPHRYSRTRDLFDDFAKVLSDADELILLDIYAAGE 386
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 498437141 402 YP----TLAVHYFSKN-----------DKQKMVDTIKNSLHADDSIVL--KGSNGM 440
Cdd:TIGR01082 387 EPingiDGKSLARKITqlgkiepyfvpDLAELVEFLAAVLQSGDLILTmgAGDIIK 442
|
|
| Mur_ligase |
pfam01225 |
Mur ligase family, catalytic domain; This family contains a number of related ligase enzymes ... |
23-96 |
2.83e-11 |
|
Mur ligase family, catalytic domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Pssm-ID: 460121 [Multi-domain] Cd Length: 84 Bit Score: 59.17 E-value: 2.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 23 TVTGVEFDSRKIKAGDLFVPLQGTN-DGHEFVAKAIENGATATLWSQEA--------EKAPEGIAVVLVKDTLLAFQALA 93
Cdd:pfam01225 1 EIHFVGIDGRGMSPGALFLALKGYRvDGSDFIESLIALGAAAVVGHDAAnnispdnpELEAAKVPGIPVIDRREALAELA 80
|
...
gi 498437141 94 SYY 96
Cdd:pfam01225 81 AAF 83
|
|
| PRK14022 |
PRK14022 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; |
17-340 |
2.63e-10 |
|
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase;
Pssm-ID: 237588 [Multi-domain] Cd Length: 481 Bit Score: 62.36 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 17 LTENEVTVTGVEFDSRKIKAGDLFVpLQGTNDGHEFVAKAIENGATATLwsqeAEKAPE-GIAVVLVKDTLLAFQALA-S 94
Cdd:PRK14022 27 YNYSGVQFDDISYDSRTADEGTLFF-AKGAYFKHKFLQNAITQGLKLYV----SEKDYEvGIPQVIVPDIKKAMSLIAmE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 95 YYlleENPD----VIAITGSNGKTTTKDMTESVLSQKFR------TYKTQGN---YNNDIGLPYTI---LHMPE----GT 154
Cdd:PRK14022 102 FY---DNPQhklkLLAFTGTKGKTTAAYFAYHILKQLHKpamlstMNTTLDGetfFKSALTTPESLdlfKMMAEavdnGM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 155 EKLILEMGmDHAGEISILSELaEPDVAAITIVGEAHIENL--GSREKIADAKMEIttgLATNGLLVIPAD----EPLLEE 228
Cdd:PRK14022 179 THLIMEVS-SQAYLVGRVYGL-TFDVGVFLNITPDHIGPIehPTFEDYFYHKRLL---MENSKAVVVNSDmdhfSELLEQ 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 229 RThslSQTVETVGIQKgelSATILNEDKgatvFSVDDNG-----YQIPLPGSYNVQNALIAMaIGRW-FGLENDEIFQGL 302
Cdd:PRK14022 254 VT---PQEHDFYGIDS---ENQIMASNA----FSFEATGklagtYDIQLIGKFNQENAMAAG-LACLrLGASLEDIQKGI 322
|
330 340 350
....*....|....*....|....*....|....*...
gi 498437141 303 AYVQVtQNRTQWLKASNGADILSDvYNANPTAMGLVLD 340
Cdd:PRK14022 323 AQTPV-PGRMEVLTQSNGAKVFID-YAHNGDSLNKLID 358
|
|
| PRK14573 |
PRK14573 |
bifunctional UDP-N-acetylmuramate--L-alanine ligase/D-alanine--D-alanine ligase; |
105-313 |
1.04e-04 |
|
bifunctional UDP-N-acetylmuramate--L-alanine ligase/D-alanine--D-alanine ligase;
Pssm-ID: 184752 [Multi-domain] Cd Length: 809 Bit Score: 44.81 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 105 IAITGSNGKTTtkdmTESVLSQKFRTYKTQGNYNNDiGLPYTILHMPEGTEKLILEMGMDHAGEISILSelaePDVAAIT 184
Cdd:PRK14573 107 ILVSGSHGKTT----VSSLITAIFQEAKKDPSYAIG-GLNQEGLNGYSGSSEYFVAEADESDGSLKHYT----PEFSVIT 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 185 IVGEAHIENL-GSREKIADAKMEITTGLATNGLLVIPADEPLLEERTHSLSQTVEtvgiQKGELSATILNEDKGATVFSV 263
Cdd:PRK14573 178 NIDNEHLSNFeGDRELLLASIQDFARKVQQINKCFYNGDCPRLKGCLQGHSYGFS----SSCDLHILSYYQEGWRSYFSA 253
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 498437141 264 D--DNGYQ---IPLPGSYNVQNALIAMAIGRWFGLENDEIFQGLAYVQVTQNRTQ 313
Cdd:PRK14573 254 KflGVVYQdieLNLVGMHNVANAAAAMGIALTLGIDEGAIRNALKGFSGVQRRLE 308
|
|
| Mur_ligase_C |
pfam02875 |
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase ... |
311-390 |
8.16e-04 |
|
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Pssm-ID: 460731 [Multi-domain] Cd Length: 87 Bit Score: 38.48 E-value: 8.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 311 RTQWLKASNGADILSDvYNANPTAMGLVLDTFAKLPTeGRRLAVLADMLELGADsfsLHTSMVEhINDQDFHEIFLYGDE 390
Cdd:pfam02875 4 RLEVVGENNGVLVIDD-YAHNPDAMEAALRALRNLFP-GRLILVFGGMGDRDAE---FHALLGR-LAAALADVVILTGDY 77
|
|
| F430_CfbE |
NF033197 |
coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in ... |
104-303 |
9.38e-04 |
|
coenzyme F430 synthase; Members of this family are coenzyme F430 synthase, involving in synthesizing coenzyme F430, which is used in methanogens by coenzyme M reductase. Members of this family are restricted to archaeal methanogens, and resemble (and may be misannotated as) MurD, an enzyme of bacterial cell wall biosynthesis.
Pssm-ID: 467992 [Multi-domain] Cd Length: 419 Bit Score: 41.54 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 104 VIAITGSNGKTTTKDMTESVLSQKFRTYKT-QGNYNNDIGL--------PYTILHMPEgtekLILEMGMDHAG----EIS 170
Cdd:NF033197 94 FIEITGVKGKTTTAELLAHILSDEYVLLHTsRGTERYPEGElsnkgsitPASILNALE----LAEEIGIDDYGflifEVS 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498437141 171 iLSELAEPDVAAITIVGEAH-IENlGSReKIADAKMEITTGLATNGLLVIPADeplleeRTHSLSQTVETVGIQKGELSA 249
Cdd:NF033197 170 -LGGTGAGDVGIITNILEDYpIAG-GKR-SASAAKLQSLKNAKVGSINVADLG------IYINGKNKLVITVAGVEILSK 240
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 498437141 250 TILNEDKGATVFSVDDNgyqipLPGSYNVQNALIAMAIGRWFGLENDEIFQGLA 303
Cdd:NF033197 241 YPLRFKYGNTEFEFNPL-----LFGPHYRENSLFAIEAALNLGVDPEDIISALK 289
|
|
| DUF3323 |
pfam11796 |
Protein of unknown function N-terminus (DUF3323); Proteins in this entry are encoded within a ... |
296-357 |
1.20e-03 |
|
Protein of unknown function N-terminus (DUF3323); Proteins in this entry are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria).
Pssm-ID: 403103 Cd Length: 209 Bit Score: 39.92 E-value: 1.20e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498437141 296 DEIFQGLAYVQVTQNRTQ-WLKASNGADILSDVYNANPTA----MGLVLDTFAKLPTEGRRLAVLAD 357
Cdd:pfam11796 80 AAFFAALRPLLAARPWLRdWLDRLRGYGLLRRLYRQDPEAartlLAQAVRVLAALPADGVRLPVLAA 146
|
|
| |
