|
Name |
Accession |
Description |
Interval |
E-value |
| TIGR00273 |
TIGR00273 |
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding ... |
12-364 |
0e+00 |
|
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. [Energy metabolism, Electron transport]
Pssm-ID: 129374 [Multi-domain] Cd Length: 432 Bit Score: 564.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 12 IKEGILR-SLRNLSENVRRN----VENHPYLIDFAEDVKSAKLKVAENYDFWIDKAKDVLESRGVNVYYAESAEEARKIA 86
Cdd:TIGR00273 1 IKDGILReALRNAQERLRANrkllVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKII 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 87 GKVVGE--GKLVVKAKSMVSEEIHLREWLEKIGNEVWETDLGELIVQVAGDKPMHMVIPALHYSEQEVGEILK-RIGVEG 163
Cdd:TIGR00273 81 GKVAQEknGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELILQLDGDPPSHIVVPALHKNRQQIGEILKeRLGYEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 164 -ESAEVLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPKTYLALVSIEKILPT--DELCLKSI 240
Cdd:TIGR00273 161 eESPEVLAREARKFMREKFLSADIGISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPTfdDELVLKSM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 241 CVQSAfFGTFPPAYINVNEKVQQQ-------DMHVILLDNGRKN---TQFREQLACVRCGRCQLECPVFQLAGNVWGGEV 310
Cdd:TIGR00273 241 LARSA-VGTRLTAYINVLTGPRQEgdvdgpeEFHLILLDNGRSNilaTEFREVLACIRCGACQNECPVYRHIGGHWYGSI 319
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 311 YGGPMGMIWSAITDAITDY---CFLSTLCGKCREVCPMKIDMPRMIREIR-------------KLALKLD 364
Cdd:TIGR00273 320 YPGPIGAVWSPLLGGYTDYkhlPYLSSLCGACREVCPVKIPLPELIREHRsdkvekgrhsgmeKLAMKMF 389
|
|
| LutB |
COG1139 |
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ... |
5-357 |
8.01e-118 |
|
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];
Pssm-ID: 440754 [Multi-domain] Cd Length: 465 Bit Score: 349.02 E-value: 8.01e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 5 DALRRKSIKEGiLRSLRNLSENVRRNVENHPYLIDFAEDVKSaklKVAENYDFWIDKAKDVLESRGVNVYYAESAEEARK 84
Cdd:COG1139 19 DEQLRKALDRA-TDTLRAKRAKAVAELPDWEALREAARAIKD---HALANLDEYLEQFEANATANGGHVHWARDAEEANR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 85 IAGKVVGE--GKLVVKAKSMVSEEIHLREWLEKIGNEVWETDLGELIVQVAGDKPMHMVIPALHYSEQEVGEILKR-IGV 161
Cdd:COG1139 95 IVLDIAREkgAKKVVKSKSMVTEEIGLNEALEAAGIEVVETDLGEYIVQLAGEPPSHIVMPAIHKNREQIAELFHEkLGT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 162 EG--ESAEVLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPKTYLALVSIEKILPT-DELclk 238
Cdd:COG1139 175 EPltDDPEELTRAAREHLREKFLEADVGITGANFAVAETGTIVLVTNEGNARLCTTLPKVHIAVMGIEKLVPTlEDL--- 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 239 sicvqSAFFGTFPP--------AYINV-------NEKVQQQDMHVILLDNGR----KNTQFREQLACVRCGRCQLECPVF 299
Cdd:COG1139 252 -----EVFLRLLPRsatgqritTYTSLitgprrpGEGDGPEEFHLVLLDNGRsamlADPEFREALRCIRCGACLNVCPVY 326
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499180774 300 QLAGnvwG---GEVYGGPMGMIWSAITDAITDY---CFLSTLCGKCREVCPMKIDMPRMIREIR 357
Cdd:COG1139 327 RRVG---GhayGSVYPGPIGAVLTPLLHGLEKAadlPYASTLCGACTEVCPVKIPIPELLLELR 387
|
|
| LUD_dom |
pfam02589 |
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and ... |
59-234 |
1.47e-32 |
|
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate
Pssm-ID: 426855 Cd Length: 188 Bit Score: 120.41 E-value: 1.47e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 59 IDKAKDVLESRGVNVYYAESAEEARKIAGKVVGEGKlvvkaksmvseeihlrewlekIGNEVWETDLGELIVqvagdkpm 138
Cdd:pfam02589 1 LEEFKENLEANGAEVYYAKTAEEALEYILELIKEGG---------------------VVSEGGSTDLGELGL-------- 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 139 hmvIPALHYSEQEVGEILKRIgvegesaevLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPK 218
Cdd:pfam02589 52 ---APALHSGRYEVLDLFEEK---------LTAEAREELREKALTADVGITGANFAIAETGTLVLVDGEGNRRLLSFLPK 119
|
170
....*....|....*.
gi 499180774 219 TYLALVSIEKILPTDE 234
Cdd:pfam02589 120 VHIAVVGINKIVPDLE 135
|
|
| PRK06259 |
PRK06259 |
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional |
286-362 |
7.91e-05 |
|
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Pssm-ID: 235756 [Multi-domain] Cd Length: 486 Bit Score: 44.23 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 286 CVRCGRCQLECPVFQLAGnvwggevYGGPMGMIWSA------------ITDAITDYCFLSTLCGKCREVCPMKIDMP-RM 352
Cdd:PRK06259 135 CIECLSCVSTCPARKVSD-------YPGPTFMRQLArfafdprdegdrEKEAFDEGLYNCTTCGKCVEVCPKEIDIPgKA 207
|
90
....*....|
gi 499180774 353 IREIRKLALK 362
Cdd:PRK06259 208 IEKLRALAFK 217
|
|
| DMSOR_beta_like |
cd16373 |
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ... |
285-344 |
8.78e-04 |
|
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.
Pssm-ID: 319895 [Multi-domain] Cd Length: 154 Bit Score: 39.55 E-value: 8.78e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499180774 285 ACVRCGRCQLECP--VFQLAGNVWGgevyggpMGMIWSAITDAITDYCFLStlCGKCREVCP 344
Cdd:cd16373 15 LCIRCGLCVEACPtgVIQPAGLEDG-------LEGGRTPYLDPREGPCDLC--CDACVEVCP 67
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TIGR00273 |
TIGR00273 |
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding ... |
12-364 |
0e+00 |
|
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. [Energy metabolism, Electron transport]
Pssm-ID: 129374 [Multi-domain] Cd Length: 432 Bit Score: 564.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 12 IKEGILR-SLRNLSENVRRN----VENHPYLIDFAEDVKSAKLKVAENYDFWIDKAKDVLESRGVNVYYAESAEEARKIA 86
Cdd:TIGR00273 1 IKDGILReALRNAQERLRANrkllVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKII 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 87 GKVVGE--GKLVVKAKSMVSEEIHLREWLEKIGNEVWETDLGELIVQVAGDKPMHMVIPALHYSEQEVGEILK-RIGVEG 163
Cdd:TIGR00273 81 GKVAQEknGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELILQLDGDPPSHIVVPALHKNRQQIGEILKeRLGYEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 164 -ESAEVLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPKTYLALVSIEKILPT--DELCLKSI 240
Cdd:TIGR00273 161 eESPEVLAREARKFMREKFLSADIGISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPTfdDELVLKSM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 241 CVQSAfFGTFPPAYINVNEKVQQQ-------DMHVILLDNGRKN---TQFREQLACVRCGRCQLECPVFQLAGNVWGGEV 310
Cdd:TIGR00273 241 LARSA-VGTRLTAYINVLTGPRQEgdvdgpeEFHLILLDNGRSNilaTEFREVLACIRCGACQNECPVYRHIGGHWYGSI 319
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 311 YGGPMGMIWSAITDAITDY---CFLSTLCGKCREVCPMKIDMPRMIREIR-------------KLALKLD 364
Cdd:TIGR00273 320 YPGPIGAVWSPLLGGYTDYkhlPYLSSLCGACREVCPVKIPLPELIREHRsdkvekgrhsgmeKLAMKMF 389
|
|
| LutB |
COG1139 |
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ... |
5-357 |
8.01e-118 |
|
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];
Pssm-ID: 440754 [Multi-domain] Cd Length: 465 Bit Score: 349.02 E-value: 8.01e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 5 DALRRKSIKEGiLRSLRNLSENVRRNVENHPYLIDFAEDVKSaklKVAENYDFWIDKAKDVLESRGVNVYYAESAEEARK 84
Cdd:COG1139 19 DEQLRKALDRA-TDTLRAKRAKAVAELPDWEALREAARAIKD---HALANLDEYLEQFEANATANGGHVHWARDAEEANR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 85 IAGKVVGE--GKLVVKAKSMVSEEIHLREWLEKIGNEVWETDLGELIVQVAGDKPMHMVIPALHYSEQEVGEILKR-IGV 161
Cdd:COG1139 95 IVLDIAREkgAKKVVKSKSMVTEEIGLNEALEAAGIEVVETDLGEYIVQLAGEPPSHIVMPAIHKNREQIAELFHEkLGT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 162 EG--ESAEVLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPKTYLALVSIEKILPT-DELclk 238
Cdd:COG1139 175 EPltDDPEELTRAAREHLREKFLEADVGITGANFAVAETGTIVLVTNEGNARLCTTLPKVHIAVMGIEKLVPTlEDL--- 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 239 sicvqSAFFGTFPP--------AYINV-------NEKVQQQDMHVILLDNGR----KNTQFREQLACVRCGRCQLECPVF 299
Cdd:COG1139 252 -----EVFLRLLPRsatgqritTYTSLitgprrpGEGDGPEEFHLVLLDNGRsamlADPEFREALRCIRCGACLNVCPVY 326
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499180774 300 QLAGnvwG---GEVYGGPMGMIWSAITDAITDY---CFLSTLCGKCREVCPMKIDMPRMIREIR 357
Cdd:COG1139 327 RRVG---GhayGSVYPGPIGAVLTPLLHGLEKAadlPYASTLCGACTEVCPVKIPIPELLLELR 387
|
|
| LUD_dom |
pfam02589 |
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and ... |
59-234 |
1.47e-32 |
|
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate
Pssm-ID: 426855 Cd Length: 188 Bit Score: 120.41 E-value: 1.47e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 59 IDKAKDVLESRGVNVYYAESAEEARKIAGKVVGEGKlvvkaksmvseeihlrewlekIGNEVWETDLGELIVqvagdkpm 138
Cdd:pfam02589 1 LEEFKENLEANGAEVYYAKTAEEALEYILELIKEGG---------------------VVSEGGSTDLGELGL-------- 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 139 hmvIPALHYSEQEVGEILKRIgvegesaevLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLSTSLPK 218
Cdd:pfam02589 52 ---APALHSGRYEVLDLFEEK---------LTAEAREELREKALTADVGITGANFAIAETGTLVLVDGEGNRRLLSFLPK 119
|
170
....*....|....*.
gi 499180774 219 TYLALVSIEKILPTDE 234
Cdd:pfam02589 120 VHIAVVGINKIVPDLE 135
|
|
| Fer4_8 |
pfam13183 |
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ... |
285-347 |
2.34e-12 |
|
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Pssm-ID: 433017 [Multi-domain] Cd Length: 64 Bit Score: 61.56 E-value: 2.34e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499180774 285 ACVRCGRCQLECPVFQLAGNVWGGEVYGGPMGMIW-SAITDAITDYCFLSTLCGKCREVCPMKI 347
Cdd:pfam13183 1 RCIRCGACLAACPVYLVTGGRFPGDPRGGAAALLGrLEALEGLAEGLWLCTLCGACTEVCPVGI 64
|
|
| GlpC |
COG0247 |
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ... |
285-357 |
6.72e-12 |
|
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];
Pssm-ID: 440017 [Multi-domain] Cd Length: 420 Bit Score: 66.25 E-value: 6.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 285 ACVRCGRCQLECPVFQLAGN---------VWGGEVYGGPMGMIWSAITDAITDYCflsTLCGKCREVCPMKIDMPRMIRE 355
Cdd:COG0247 79 ACVGCGFCRAMCPSYKATGDekdsprgriNLLREVLEGELPLDLSEEVYEVLDLC---LTCKACETACPSGVDIADLIAE 155
|
..
gi 499180774 356 IR 357
Cdd:COG0247 156 AR 157
|
|
| Fer4_17 |
pfam13534 |
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ... |
285-348 |
2.77e-05 |
|
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Pssm-ID: 433287 [Multi-domain] Cd Length: 61 Bit Score: 41.29 E-value: 2.77e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499180774 285 ACVRCGRCQLECPVFQLAGNVWGGEVYGGPMGMIWSAITDAITDYCflsTLCGKCREVCPMKID 348
Cdd:pfam13534 1 RCIQCGCCVDECPRYLLNGDEPKKLMRAAYLGDLEELQANKVANLC---SECGLCEYACPMGLD 61
|
|
| Fer4_10 |
pfam13237 |
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ... |
285-344 |
4.69e-05 |
|
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Pssm-ID: 404174 [Multi-domain] Cd Length: 56 Bit Score: 40.70 E-value: 4.69e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 285 ACVRCGRCQLECPvfqlagnvWGGEVYGGPMGMIWSAITDAITDYCflsTLCGKCREVCP 344
Cdd:pfam13237 8 KCIGCGRCTAACP--------AGLTRVGAIVERLEGEAVRIGVWKC---IGCGACVEACP 56
|
|
| PRK06259 |
PRK06259 |
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional |
286-362 |
7.91e-05 |
|
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Pssm-ID: 235756 [Multi-domain] Cd Length: 486 Bit Score: 44.23 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 286 CVRCGRCQLECPVFQLAGnvwggevYGGPMGMIWSA------------ITDAITDYCFLSTLCGKCREVCPMKIDMP-RM 352
Cdd:PRK06259 135 CIECLSCVSTCPARKVSD-------YPGPTFMRQLArfafdprdegdrEKEAFDEGLYNCTTCGKCVEVCPKEIDIPgKA 207
|
90
....*....|
gi 499180774 353 IREIRKLALK 362
Cdd:PRK06259 208 IEKLRALAFK 217
|
|
| LutC |
COG1556 |
L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion]; |
148-232 |
1.29e-04 |
|
L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion];
Pssm-ID: 441165 Cd Length: 206 Bit Score: 42.54 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 148 SEQEVGEILKRI--------------GVEGESAEVLAREVRKFMREKFLKADVGVSGCNAFSAETGRIFLIENEGNIRLS 213
Cdd:COG1556 58 TEAELPAALAELlaeaglkrivvpepGLPAALQLAWDPLEELEDPAALEDADVGITGAEFGIAETGTIVLDSGPDQGRAL 137
|
90
....*....|....*....
gi 499180774 214 TSLPKTYLALVSIEKILPT 232
Cdd:COG1556 138 SLLPEHHIVVVPASQIVPT 156
|
|
| Fer4_9 |
pfam13187 |
4Fe-4S dicluster domain; |
285-347 |
1.52e-04 |
|
4Fe-4S dicluster domain;
Pssm-ID: 463801 [Multi-domain] Cd Length: 50 Bit Score: 39.07 E-value: 1.52e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499180774 285 ACVRCGRCQLECPvFQLAGNVWGGEVyggpmgmiwsAITDAITDYCflsTLCGKCREVCPMKI 347
Cdd:pfam13187 1 KCTGCGACVAACP-AGAIVPDLVGQT----------IRGDIAGLAC---IGCGACVDACPRGA 49
|
|
| DMSOR_beta_like |
cd16373 |
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ... |
285-344 |
8.78e-04 |
|
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.
Pssm-ID: 319895 [Multi-domain] Cd Length: 154 Bit Score: 39.55 E-value: 8.78e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499180774 285 ACVRCGRCQLECP--VFQLAGNVWGgevyggpMGMIWSAITDAITDYCFLStlCGKCREVCP 344
Cdd:cd16373 15 LCIRCGLCVEACPtgVIQPAGLEDG-------LEGGRTPYLDPREGPCDLC--CDACVEVCP 67
|
|
| Fer4_16 |
pfam13484 |
4Fe-4S double cluster binding domain; |
286-346 |
7.76e-03 |
|
4Fe-4S double cluster binding domain;
Pssm-ID: 463893 [Multi-domain] Cd Length: 65 Bit Score: 34.77 E-value: 7.76e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499180774 286 CVRCGRCQLECPVFQLagnvwGGEVYGGPMGMIWSAITDAITDY------CFL---STLCGKCREVCPMK 346
Cdd:pfam13484 1 CGSCGKCIDACPTGAI-----VGPEGVLDARRCISYLTIEKKGLipdelrCLLgnrCYGCDICQDVCPWN 65
|
|
| |
