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Conserved domains on  [gi|499192071|ref|WP_010889611|]
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methyl-accepting chemotaxis protein [Deinococcus radiodurans]

Protein Classification

methyl-accepting chemotaxis protein( domain architecture ID 11435591)

methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior

CATH:  1.10.287.950
Gene Ontology:  GO:0006935
PubMed:  18165013|20738376
SCOP:  4003862

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
206-742 3.64e-64

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


:

Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 222.97  E-value: 3.64e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 206 LQLAALTADMLTLTPNDAGLRQQLLRHTAIISDVLDAYRGDLARAYSLRPELRQTLQAPTDKMTRAIDDSLQRAQAGLDK 285
Cdd:COG0840    2 LILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 286 GTYGDALAKSYSLSLNSLRDSYIATITSVGQELLGRAKGGYVTLALQFGLLLLLLGAVAALLFALMRAITRPLSQLTDAS 365
Cdd:COG0840   82 LALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 366 RQLSAGDLNVDVPVTTQDELALLsrsfndAAAELRRNQLRVDQEREEAQQMQSNIGEFLDVTMDIADGDLTRRGKVT-DD 444
Cdd:COG0840  162 ALAALLEAAALALAAAALALALL------AAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDVDsKD 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 445 VLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDLARSAQDSA 524
Cdd:COG0840  236 EIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAA 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 525 AAAQQALQTSQQGQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAG 604
Cdd:COG0840  316 ELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAG 395

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 605 SRFAVVADEVRQLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQM 684
Cdd:COG0840  396 RGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEI 475

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499192071 685 SDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:COG0840  476 AAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
206-742 3.64e-64

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 222.97  E-value: 3.64e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 206 LQLAALTADMLTLTPNDAGLRQQLLRHTAIISDVLDAYRGDLARAYSLRPELRQTLQAPTDKMTRAIDDSLQRAQAGLDK 285
Cdd:COG0840    2 LILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 286 GTYGDALAKSYSLSLNSLRDSYIATITSVGQELLGRAKGGYVTLALQFGLLLLLLGAVAALLFALMRAITRPLSQLTDAS 365
Cdd:COG0840   82 LALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 366 RQLSAGDLNVDVPVTTQDELALLsrsfndAAAELRRNQLRVDQEREEAQQMQSNIGEFLDVTMDIADGDLTRRGKVT-DD 444
Cdd:COG0840  162 ALAALLEAAALALAAAALALALL------AAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDVDsKD 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 445 VLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDLARSAQDSA 524
Cdd:COG0840  236 EIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAA 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 525 AAAQQALQTSQQGQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAG 604
Cdd:COG0840  316 ELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAG 395

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 605 SRFAVVADEVRQLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQM 684
Cdd:COG0840  396 RGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEI 475

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499192071 685 SDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:COG0840  476 AAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 466-741 1.94e-44

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 160.53  E-value: 1.94e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071   466 EVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDlarsaqdsaaaaqqALQTSQQGQQAVQGTL 545
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQS--------------AAEAAEEGREAVEDAI 66

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071   546 QGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEAT 625
Cdd:smart00283  67 TAMDQIREVVEEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESA 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071   626 GRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDI 705
Cdd:smart00283 147 KEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEI 226

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 499192071   706 AALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFR 741
Cdd:smart00283 227 AQVTQETAAMSEEISAAAEELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 537-710 5.43e-39

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 143.15  E-value: 5.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 537 GQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQ 616
Cdd:cd11386   31 GREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRK 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 617 LAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQElgdIAQRSAQLAGQMSDVSGAqardIE 696
Cdd:cd11386  111 LAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEE---IVASVEEVADGIQEISAA----TQ 183

                        170
                 ....*....|....
gi 499192071 697 QLGQGVQDIAALAE 710
Cdd:cd11386  184 EQSASTQEIAAAVE 197
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 550-708 4.36e-29

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 114.07  E-value: 4.36e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071  550 AIREGTQ--DVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGR 627
Cdd:pfam00015  11 AQDGGKEvaNVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSAQAAKE 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071  628 VAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAA 707
Cdd:pfam00015  91 IEALIIEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQAVARMDQ 170


                  .
gi 499192071  708 L 708
Cdd:pfam00015 171 V 171
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
414-742 6.98e-25

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 109.66  E-value: 6.98e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 414 QQMQSNIGEFLDVTMDIADGDLTRRGKVT-DDVLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIgqgS 492
Cdd:PRK15041 216 ASLVAPMNRLIDSIRHIAGGDLVKPIEVDgSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDL---S 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 493 QLTAEQSRRLAERAAEISlriqdlarsaqdsaAAAQQALQTSQQGQQAVQGTLQGMAAIREGTQ---DVAQTMQALSERS 569
Cdd:PRK15041 293 SRTEQQAASLEETAASME--------------QLTATVKQNAENARQASHLALSASETAQRGGKvvdNVVQTMRDISTSS 358

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 570 EQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGRVAALIttlqsdiaqvrqgvQSS 649
Cdd:PRK15041 359 QKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLI--------------EDS 424

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 650 AAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRAL 729
Cdd:PRK15041 425 VGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQ 504

                        330
                 ....*....|...
gi 499192071 730 ATQLDQSLSRFRL 742
Cdd:PRK15041 505 ASRLTEAVAVFRI 517
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
206-742 3.64e-64

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 222.97  E-value: 3.64e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 206 LQLAALTADMLTLTPNDAGLRQQLLRHTAIISDVLDAYRGDLARAYSLRPELRQTLQAPTDKMTRAIDDSLQRAQAGLDK 285
Cdd:COG0840    2 LILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 286 GTYGDALAKSYSLSLNSLRDSYIATITSVGQELLGRAKGGYVTLALQFGLLLLLLGAVAALLFALMRAITRPLSQLTDAS 365
Cdd:COG0840   82 LALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 366 RQLSAGDLNVDVPVTTQDELALLsrsfndAAAELRRNQLRVDQEREEAQQMQSNIGEFLDVTMDIADGDLTRRGKVT-DD 444
Cdd:COG0840  162 ALAALLEAAALALAAAALALALL------AAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDVDsKD 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 445 VLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDLARSAQDSA 524
Cdd:COG0840  236 EIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAA 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 525 AAAQQALQTSQQGQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAG 604
Cdd:COG0840  316 ELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAG 395

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 605 SRFAVVADEVRQLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQM 684
Cdd:COG0840  396 RGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEI 475

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499192071 685 SDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:COG0840  476 AAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 466-741 1.94e-44

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 160.53  E-value: 1.94e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071   466 EVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDlarsaqdsaaaaqqALQTSQQGQQAVQGTL 545
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQS--------------AAEAAEEGREAVEDAI 66

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071   546 QGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEAT 625
Cdd:smart00283  67 TAMDQIREVVEEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESA 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071   626 GRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDI 705
Cdd:smart00283 147 KEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEI 226

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 499192071   706 AALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFR 741
Cdd:smart00283 227 AQVTQETAAMSEEISAAAEELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 537-710 5.43e-39

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 143.15  E-value: 5.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 537 GQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQ 616
Cdd:cd11386   31 GREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRK 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 617 LAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQElgdIAQRSAQLAGQMSDVSGAqardIE 696
Cdd:cd11386  111 LAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEE---IVASVEEVADGIQEISAA----TQ 183

                        170
                 ....*....|....
gi 499192071 697 QLGQGVQDIAALAE 710
Cdd:cd11386  184 EQSASTQEIAAAVE 197
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 550-708 4.36e-29

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 114.07  E-value: 4.36e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071  550 AIREGTQ--DVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGR 627
Cdd:pfam00015  11 AQDGGKEvaNVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSAQAAKE 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071  628 VAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAA 707
Cdd:pfam00015  91 IEALIIEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQAVARMDQ 170


                  .
gi 499192071  708 L 708
Cdd:pfam00015 171 V 171
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
414-742 6.98e-25

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 109.66  E-value: 6.98e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 414 QQMQSNIGEFLDVTMDIADGDLTRRGKVT-DDVLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIgqgS 492
Cdd:PRK15041 216 ASLVAPMNRLIDSIRHIAGGDLVKPIEVDgSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDL---S 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 493 QLTAEQSRRLAERAAEISlriqdlarsaqdsaAAAQQALQTSQQGQQAVQGTLQGMAAIREGTQ---DVAQTMQALSERS 569
Cdd:PRK15041 293 SRTEQQAASLEETAASME--------------QLTATVKQNAENARQASHLALSASETAQRGGKvvdNVVQTMRDISTSS 358

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 570 EQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGRVAALIttlqsdiaqvrqgvQSS 649
Cdd:PRK15041 359 QKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLI--------------EDS 424

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 650 AAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRAL 729
Cdd:PRK15041 425 VGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQ 504

                        330
                 ....*....|...
gi 499192071 730 ATQLDQSLSRFRL 742
Cdd:PRK15041 505 ASRLTEAVAVFRI 517
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 429-742 1.61e-23

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 105.47  E-value: 1.61e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 429 DIADGDLTRRGKVTD-DVLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIgqgSQLTAEQSRRLAERAA 507
Cdd:PRK15048 229 EIAGGNLANTLTIDGrSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDL---SSRTEQQASALEETAA 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 508 ---EISLRIQDLARSAQDSAAAAQQALQTSQQGQQAVQGtlqgmaairegtqdVAQTMQALSERSEQIQGIVDTITQISS 584
Cdd:PRK15048 306 smeQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDG--------------VVKTMHEIADSSKKIADIISVIDGIAF 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 585 QTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGRVAALIttlqsdiaqvrqgvQSSAAQVEKGYRVAEEAG 664
Cdd:PRK15048 372 QTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALI--------------EDSVSRVDTGSVLVESAG 437

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499192071 665 SRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:PRK15048 438 ETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRL 515
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
430-742 6.16e-20

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 93.98  E-value: 6.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 430 IADGDLTRRGKV-TDDVLGNVVDSINLMVGELADTLREVQgasqsvnQGSAQMLTTTAQIGQGSQltaEQSRRLAERAAE 508
Cdd:PRK09793 228 IAAGNLARPIAVyGRNEITAIFASLKTMQQALRGTVSDVR-------KGSQEMHIGIAEIVAGNN---DLSSRTEQQAAS 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 509 ISLRIQDLARSAQDSAAAAQQALQTSQQGQQAvqgtlqGMAAIREGTQ--DVAQTMQALSERSEQIQGIVDTITQISSQT 586
Cdd:PRK09793 298 LAQTAASMEQLTATVGQNADNARQASELAKNA------ATTAQAGGVQvsTMTHTMQEIATSSQKIGDIISVIDGIAFQT 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 587 NLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGRVAALIttlqsdiaqvrqgvQSSAAQVEKGYRVAEEAGSR 666
Cdd:PRK09793 372 NILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLI--------------EESVNRVQQGSKLVNNAAAT 437

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499192071 667 LQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:PRK09793 438 MTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTL 513
HAMP cd06225
Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; ...
 355-399 2.08e-11

Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The structure of the Af1503 HAMP dimer from Archaeoglobus fulgidus has been solved using nuclear magnetic resonance, revealing a parallel four-helix bundle; this structure has been confirmed by cross-linking analysis of HAMP domains from the Escherichia coli aerotaxis receptor Aer. It has been suggested that the four-helix arrangement can rotate between the unusually packed conformation observed in the NMR structure and a canonical coiled-coil arrangement. Such rotation may coincide with signal transduction, but a common mechanism by which HAMP domains relay a variety of input signals has yet to be established.


Pssm-ID: 381743 [Multi-domain]  Cd Length: 45  Bit Score: 59.00  E-value: 2.08e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 499192071 355 TRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAEL 399
Cdd:cd06225    1 TRPLRRLTEAARRIAEGDLDVRVPVRSKDEIGELARAFNQMAERL 45
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 352-420 6.49e-11

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 64.98  E-value: 6.49e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499192071 352 RAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAELRRNQLRVDQEREEAQQMQSNI 420
Cdd:COG5000   31 RRLTRPLRRLAEATRAVAAGDLSVRLPVTGDDEIGELARAFNRMTDQLKEQREELEERRRYLETILENL 99
HAMP pfam00672
HAMP domain;
351-401 1.13e-09

HAMP domain;


Pssm-ID: 459898 [Multi-domain]  Cd Length: 53  Bit Score: 54.55  E-value: 1.13e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 499192071  351 MRAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAELRR 401
Cdd:pfam00672   3 ARRILRPLRRLAEAARRIASGDLDVRLPVSGRDEIGELARAFNQMAERLRE 53
HAMP COG2770
HAMP domain [Signal transduction mechanisms];
352-739 4.86e-09

HAMP domain [Signal transduction mechanisms];


Pssm-ID: 442051 [Multi-domain]  Cd Length: 631  Bit Score: 59.74  E-value: 4.86e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 352 RAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAELRRNQLRVDQEREEAQQMQSNIGEFLDVTMDIA 431
Cdd:COG2770  234 RRITRPLRRLAEAARRIAAGDLDVRIPVSRKDEIGELARAFNRMADSLRESIEEAEEEEELAEAELARLLEALLELLLAL 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 432 DGDLTRRGKVTDDVLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISL 511
Cdd:COG2770  314 LLLLLALLLLAAAALLLELLLLLLLALLLLLLLAADLLLALALAALLLLLALELLLEAELLVLLALEALALEAELAAVLA 393

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 512 RIQDLARSAQDSAAAAQQALQTSQQGQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSL 591
Cdd:COG2770  394 LLAALAAALLLLELALEELVLALLALALLALAAAAAAAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALL 473

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 592 HASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELG 671
Cdd:COG2770  474 LLAALLLLAALGALELLLLEEEEEAGAAAEELAEELLLLEGLLLLLLLEAEALEVAEELLELEEAALLLAAAAELAALLA 553

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499192071 672 DIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSR 739
Cdd:COG2770  554 LLLALAAVEAAALLLAALLLAAVAALLELAALLLLLLAAAEALAALELELAAAAEAALAEAELLEVAA 621
HAMP smart00304
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;
352-401 5.13e-09

HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;


Pssm-ID: 197640 [Multi-domain]  Cd Length: 53  Bit Score: 52.64  E-value: 5.13e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 499192071   352 RAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAELRR 401
Cdd:smart00304   1 RRLLRPLRRLAEAAQRIADGDLTVRLPVDGRDEIGELARAFNEMADRLEE 50
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
352-417 1.89e-05

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 47.71  E-value: 1.89e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499192071 352 RAITRPLSQLTDASRQLSAGDLnVDVPVTTQDELALLSRSFNDAAAELRRNQLRVDQEREEAQQMQ 417
Cdd:COG2972  179 RSITRPIKRLKKAMKKVEKGDL-VRLEVSGNDEIGILARSFNEMVERIKELIEEVYELELEKKEAE 243
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 382-742 3.03e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.62  E-value: 3.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 382 QDELALLSRSFNDAAAELRRNQLRVDQEREEAQQMQSNIGEfLDVTMDIADGDLTRRGKvtddvlgnvvdsinlmvgELA 461
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEE-LELELEEAQAEEYELLA------------------ELA 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 462 DTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDLARSAQDSAAAAQQALQTSQQGQQAV 541
Cdd:COG1196  299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 542 QGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQT 621
Cdd:COG1196  379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 622 NEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQG 701
Cdd:COG1196  459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 499192071 702 VQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:COG1196  539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
PRK10935 PRK10935
nitrate/nitrite two-component system sensor histidine kinase NarQ;
352-399 3.70e-05

nitrate/nitrite two-component system sensor histidine kinase NarQ;


Pssm-ID: 236800 [Multi-domain]  Cd Length: 565  Bit Score: 47.16  E-value: 3.70e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 499192071 352 RAITRPLSQLTDASRQLSAGDLN-VDVPVTTQDELALLSRSFNDAAAEL 399
Cdd:PRK10935 174 RQVVAPLNQLVTASQQIEKGQFDhIPLDTTLPNELGLLAKAFNQMSSEL 222
NarQ COG3850
Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction ...
 351-660 6.73e-05

Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction mechanisms];


Pssm-ID: 443059 [Multi-domain]  Cd Length: 448  Bit Score: 46.03  E-value: 6.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 351 MRAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAELRRNQLRVDQEREEAQQMQSNIGEFLDVTMDI 430
Cdd:COG3850  139 RRRIVRPLRRLTQAAERIARGDFDARVPVSGRDELGTLARAFNRMADELQELYAELEEEEELEAELELLALLDELLLLAA 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 431 ADGDLTRRGKVTDDVLGNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEIS 510
Cdd:COG3850  219 LLLLLALLLALLLAALLAALLLLLLLQDALAESELLALNILAGLLELLLALLLLLLASALLLLELELLALLLELVELLAL 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 511 LRIQDLARSAQDSAAAAQQALQTSQQGQQAVQGTLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQTNLLS 590
Cdd:COG3850  299 AAAEEALLLLVELAALLLLLLLQAIANASLLLIALASVVAALLELASILALQAALEAAAAGAALAAAAAAAGLARALAQA 378

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 591 LHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVA 660
Cdd:COG3850  379 GADAAEALGLLAEASEGAAGQGAGLVDVEGGVAGEGGLVVLIVSIIAGGEAIARGEALAARGLAAAAALA 448
PRK10549 PRK10549
two-component system sensor histidine kinase BaeS;
352-403 2.51e-04

two-component system sensor histidine kinase BaeS;


Pssm-ID: 182539 [Multi-domain]  Cd Length: 466  Bit Score: 44.24  E-value: 2.51e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 499192071 352 RAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRSFNDAAAELRRNQ 403
Cdd:PRK10549 186 RGLLAPVKRLVEGTHKLAAGDFTTRVTPTSRDELGRLAQDFNQLASTLEKNE 237
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
 351-415 5.53e-04

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 43.14  E-value: 5.53e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499192071 351 MRAITRPLSQLTDASRQLSAGDLNVDVPVTTQDELALLSRS---FNDAAAELRRNQLRVDQEREEAQQ 415
Cdd:COG4192  348 RRRLVKRLNALSDAMAAIAAGDLDVPIPVDGNDEIGRIARLlrvFRDQAIEKTQELETEIEERKRIEK 415
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 464-742 7.78e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 7.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 464 LREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERAAEISLRIQDLARSAQDSAAAAQQALQTSQQGQQAVQG 543
Cdd:COG1196  224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 544 TLQGMAAIREGTQDVAQTMQALSERSEQIQGIVDTITQISSQtnLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNE 623
Cdd:COG1196  304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192071 624 ATGRVAALitTLQSDIAQVRQGVQSSAAQVEkgyRVAEEAGSRLQELGDIAQRSAQLAGQMSDVSGAQARDIEQLGQGVQ 703
Cdd:COG1196  382 EELAEELL--EALRAAAELAAQLEELEEAEE---ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 499192071 704 DIAALAEGAQQSVQRGRGAAEQLRALATQLDQSLSRFRL 742
Cdd:COG1196  457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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