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Conserved domains on  [gi|499195549|ref|WP_010893089|]
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Sec-independent protein translocase protein TatB [Xylella fastidiosa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04654 super family cl31366
sec-independent translocase; Provisional
 1-101 1.18e-36

sec-independent translocase; Provisional


The actual alignment was detected with superfamily member PRK04654:

Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 124.92  E-value: 1.18e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQVIHDAQAQLQSN 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                         90       100
                 ....*....|....*....|.
gi 499195549  81 QQdmNIQNSISILHEQTKRDI 101
Cdd:PRK04654  81 QQ--QVEQGARALHDDVSRDI 99
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-101 1.18e-36

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 124.92  E-value: 1.18e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQVIHDAQAQLQSN 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                         90       100
                 ....*....|....*....|.
gi 499195549  81 QQdmNIQNSISILHEQTKRDI 101
Cdd:PRK04654  81 QQ--QVEQGARALHDDVSRDI 99
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-80 7.57e-27

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 95.46  E-value: 7.57e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499195549    2 FDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQV-IHDAQAQLQSN 80
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQArFLNLTAELKDS 80
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-69 2.91e-18

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 73.43  E-value: 2.91e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQV 69
Cdd:COG1826    1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFKKAANEVKEELDEELKEEELRKSEKEAEEL 69
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-33 5.99e-07

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 43.83  E-value: 5.99e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 499195549    4 IGFSELLLIAVVALVVLGPERLPKAARFAG 33
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALG 30
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-101 1.18e-36

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 124.92  E-value: 1.18e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQVIHDAQAQLQSN 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                         90       100
                 ....*....|....*....|.
gi 499195549  81 QQdmNIQNSISILHEQTKRDI 101
Cdd:PRK04654  81 QQ--QVEQGARALHDDVSRDI 99
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-80 7.57e-27

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 95.46  E-value: 7.57e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499195549    2 FDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQV-IHDAQAQLQSN 80
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQArFLNLTAELKDS 80
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-69 2.91e-18

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 73.43  E-value: 2.91e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRARTQWESIKQELERELEAEALKRNLENAQQV 69
Cdd:COG1826    1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFKKAANEVKEELDEELKEEELRKSEKEAEEL 69
PRK01371 PRK01371
Sec-independent protein translocase protein TatB;
1-41 1.31e-12

Sec-independent protein translocase protein TatB;


Pssm-ID: 179287 [Multi-domain]  Cd Length: 137  Bit Score: 60.50  E-value: 1.31e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVRRART 41
Cdd:PRK01371   1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLRE 41
tatA PRK14858
twin arginine translocase protein A; Provisional
 1-33 9.00e-09

twin arginine translocase protein A; Provisional


Pssm-ID: 184860  Cd Length: 108  Bit Score: 49.86  E-value: 9.00e-09
                         10        20        30
                 ....*....|....*....|....*....|...
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14858   1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLG 33
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-33 5.99e-07

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 43.83  E-value: 5.99e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 499195549    4 IGFSELLLIAVVALVVLGPERLPKAARFAG 33
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALG 30
tatA PRK14861
twin arginine translocase protein A; Provisional
 1-33 1.13e-06

twin arginine translocase protein A; Provisional


Pssm-ID: 237837  Cd Length: 61  Bit Score: 43.03  E-value: 1.13e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14861   2 FSNIGFPGLILILVVALIIFGPKKLPELGKALG 34
tatB PRK00182
Sec-independent protein translocase subunit TatB;
1-39 5.77e-06

Sec-independent protein translocase subunit TatB;


Pssm-ID: 234681  Cd Length: 160  Bit Score: 43.28  E-value: 5.77e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 499195549   1 MF-DIGFSELLLIAVVALVVLGPERLP---KAARFAGLLVRRA 39
Cdd:PRK00182   1 MFsSVGWGEILLLLIVGLIVIGPERLPrliEDVRAALLAARTA 43
tatA PRK14860
twin arginine translocase protein A; Provisional
 1-37 3.53e-05

twin arginine translocase protein A; Provisional


Pssm-ID: 184862  Cd Length: 64  Bit Score: 39.33  E-value: 3.53e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLPKAARFAGLLVR 37
Cdd:PRK14860   1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIR 37
tatA PRK14857
TatA/E family twin arginine-targeting protein translocase;
2-33 6.12e-05

TatA/E family twin arginine-targeting protein translocase;


Pssm-ID: 184859  Cd Length: 90  Bit Score: 39.32  E-value: 6.12e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 499195549   2 FDIGFSELLLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14857   4 FGIGLPEMAVILVIALLVFGPKKLPEIGRSLG 35
tatA PRK14859
twin arginine translocase protein A; Provisional
 1-26 2.61e-04

twin arginine translocase protein A; Provisional


Pssm-ID: 184861  Cd Length: 63  Bit Score: 37.01  E-value: 2.61e-04
                         10        20
                 ....*....|....*....|....*.
gi 499195549   1 MFDIGFSELLLIAVVALVVLGPERLP 26
Cdd:PRK14859   1 MFGIGMPELIVILVIVLIVFGAGKLP 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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