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Conserved domains on  [gi|499205037|ref|WP_010902577|]
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molybdopterin-guanine dinucleotide biosynthesis protein B [Halobacterium salinarum]

Protein Classification

molybdopterin-guanine dinucleotide biosynthesis protein MobB( domain architecture ID 10015522)

molybdopterin-guanine dinucleotide biosynthesis protein MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mobB TIGR00176
molybdopterin-guanine dinucleotide biosynthesis protein MobB; This molybdenum cofactor ...
 3-148 3.99e-46

molybdopterin-guanine dinucleotide biosynthesis protein MobB; This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]


:

Pssm-ID: 272943 [Multi-domain]  Cd Length: 155  Bit Score: 147.14  E-value: 3.99e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037    3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIGLTDDGSWF--GTGDSRDL 79
Cdd:TIGR00176   1 VLQIVGPKNSGKTTLIERLVKALKARGyRVATIKHDHHDFDIDKNGKDSYRHREAGADQVIVASSRRYAFmhETQEERDL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499205037   80 SAVLGSFAPtHDYALVEGFSDSALPKVVLGGRDAAAPVAVTAASAD------ALDLDAAVAAITDPAAAYEPHEQ 148
Cdd:TIGR00176  81 EALLDRLPD-LDIILVEGFKDSPLPKIVVFRNPAEESEIIRPKIIAiasdesLSALKLPVLDLNDVEAIAAFIEK 154
 
Name Accession Description Interval E-value
mobB TIGR00176
molybdopterin-guanine dinucleotide biosynthesis protein MobB; This molybdenum cofactor ...
 3-148 3.99e-46

molybdopterin-guanine dinucleotide biosynthesis protein MobB; This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]


Pssm-ID: 272943 [Multi-domain]  Cd Length: 155  Bit Score: 147.14  E-value: 3.99e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037    3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIGLTDDGSWF--GTGDSRDL 79
Cdd:TIGR00176   1 VLQIVGPKNSGKTTLIERLVKALKARGyRVATIKHDHHDFDIDKNGKDSYRHREAGADQVIVASSRRYAFmhETQEERDL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499205037   80 SAVLGSFAPtHDYALVEGFSDSALPKVVLGGRDAAAPVAVTAASAD------ALDLDAAVAAITDPAAAYEPHEQ 148
Cdd:TIGR00176  81 EALLDRLPD-LDIILVEGFKDSPLPKIVVFRNPAEESEIIRPKIIAiasdesLSALKLPVLDLNDVEAIAAFIEK 154
PRK14493 PRK14493
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; ...
 1-112 6.01e-40

putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional


Pssm-ID: 237730 [Multi-domain]  Cd Length: 274  Bit Score: 135.13  E-value: 6.01e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARGPVATVKHLTHEPDiDTEGKDTARHRAGGASRTIGLTDdGSWFGTGDSRDLS 80
Cdd:PRK14493   1 MKVLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMDTERL-NPDGTDTGRHFDAGADVVYGLTD-GEWVASGRDRSLD 78

                         90       100       110
                 ....*....|....*....|....*....|..
gi 499205037  81 AVLGSFAPTHDYALVEGFSDSALPKVVLGGRD 112
Cdd:PRK14493  79 DALDDLAPGMDYAVVEGFKDSRLPKVVLGDMD 110
MobB COG1763
Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; ...
 1-112 3.23e-37

Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; Molybdopterin-guanine dinucleotide biosynthesis protein is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 441369 [Multi-domain]  Cd Length: 162  Bit Score: 124.91  E-value: 3.23e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIGLTDDGSW--FGTGDSR 77
Cdd:COG1763    1 MPVLGIVGYSGSGKTTLLEKLIPELKARGlRVGTIKHAHHDFDIDTPGKDSYRHREAGADEVLVASPERWAlmTELPEEP 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 499205037  78 DLSAVLGSFAPThDYALVEGFSDSALPKVVLGGRD 112
Cdd:COG1763   81 SLDELLARLDDV-DLVLVEGFKHEPLPKIEVHRAE 114
MobB cd03116
molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace ...
 3-108 1.35e-26

molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In Escherichia coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.


Pssm-ID: 349770 [Multi-domain]  Cd Length: 157  Bit Score: 97.32  E-value: 1.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIgLTDDGSW----FGTGDSR 77
Cdd:cd03116    2 IVGVVGKSGSGKTTLIEKLIPELKARGlRVAVIKHTHHGFDIDTPGKDSYRHRQAGADAVL-VSSPNRLalihERPEWEL 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499205037  78 DLSAVLGSFAPThDYALVEGFSDSALPKVVL 108
Cdd:cd03116   81 TLLELLARFSDV-DLVLVEGFKKEPIPKIEV 110
MobB pfam03205
Molybdopterin guanine dinucleotide synthesis protein B; This protein contains a P-loop.
 3-108 2.03e-23

Molybdopterin guanine dinucleotide synthesis protein B; This protein contains a P-loop.


Pssm-ID: 427196 [Multi-domain]  Cd Length: 133  Bit Score: 88.76  E-value: 2.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037    3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASrTIGLTDDGSW-----FGTGDS 76
Cdd:pfam03205   1 ILGIVGWSGSGKTTLLEKLIPELKARGlRVGTIKHAHHGFDIDKPGKDSWRHRKAGAS-EVLVASPGRWalmheLRDEPE 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 499205037   77 RDLSAVLGSFAPThDYALVEGFSDSALPKVVL 108
Cdd:pfam03205  80 PSLEELLARLSPV-DLVLVEGFKKEPYPKIEV 110
 
Name Accession Description Interval E-value
mobB TIGR00176
molybdopterin-guanine dinucleotide biosynthesis protein MobB; This molybdenum cofactor ...
 3-148 3.99e-46

molybdopterin-guanine dinucleotide biosynthesis protein MobB; This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]


Pssm-ID: 272943 [Multi-domain]  Cd Length: 155  Bit Score: 147.14  E-value: 3.99e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037    3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIGLTDDGSWF--GTGDSRDL 79
Cdd:TIGR00176   1 VLQIVGPKNSGKTTLIERLVKALKARGyRVATIKHDHHDFDIDKNGKDSYRHREAGADQVIVASSRRYAFmhETQEERDL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499205037   80 SAVLGSFAPtHDYALVEGFSDSALPKVVLGGRDAAAPVAVTAASAD------ALDLDAAVAAITDPAAAYEPHEQ 148
Cdd:TIGR00176  81 EALLDRLPD-LDIILVEGFKDSPLPKIVVFRNPAEESEIIRPKIIAiasdesLSALKLPVLDLNDVEAIAAFIEK 154
PRK14493 PRK14493
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; ...
 1-112 6.01e-40

putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional


Pssm-ID: 237730 [Multi-domain]  Cd Length: 274  Bit Score: 135.13  E-value: 6.01e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARGPVATVKHLTHEPDiDTEGKDTARHRAGGASRTIGLTDdGSWFGTGDSRDLS 80
Cdd:PRK14493   1 MKVLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMDTERL-NPDGTDTGRHFDAGADVVYGLTD-GEWVASGRDRSLD 78

                         90       100       110
                 ....*....|....*....|....*....|..
gi 499205037  81 AVLGSFAPTHDYALVEGFSDSALPKVVLGGRD 112
Cdd:PRK14493  79 DALDDLAPGMDYAVVEGFKDSRLPKVVLGDMD 110
MobB COG1763
Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; ...
 1-112 3.23e-37

Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; Molybdopterin-guanine dinucleotide biosynthesis protein is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 441369 [Multi-domain]  Cd Length: 162  Bit Score: 124.91  E-value: 3.23e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIGLTDDGSW--FGTGDSR 77
Cdd:COG1763    1 MPVLGIVGYSGSGKTTLLEKLIPELKARGlRVGTIKHAHHDFDIDTPGKDSYRHREAGADEVLVASPERWAlmTELPEEP 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 499205037  78 DLSAVLGSFAPThDYALVEGFSDSALPKVVLGGRD 112
Cdd:COG1763   81 SLDELLARLDDV-DLVLVEGFKHEPLPKIEVHRAE 114
MobB cd03116
molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace ...
 3-108 1.35e-26

molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In Escherichia coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.


Pssm-ID: 349770 [Multi-domain]  Cd Length: 157  Bit Score: 97.32  E-value: 1.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIgLTDDGSW----FGTGDSR 77
Cdd:cd03116    2 IVGVVGKSGSGKTTLIEKLIPELKARGlRVAVIKHTHHGFDIDTPGKDSYRHRQAGADAVL-VSSPNRLalihERPEWEL 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499205037  78 DLSAVLGSFAPThDYALVEGFSDSALPKVVL 108
Cdd:cd03116   81 TLLELLARFSDV-DLVLVEGFKKEPIPKIEV 110
MobB pfam03205
Molybdopterin guanine dinucleotide synthesis protein B; This protein contains a P-loop.
 3-108 2.03e-23

Molybdopterin guanine dinucleotide synthesis protein B; This protein contains a P-loop.


Pssm-ID: 427196 [Multi-domain]  Cd Length: 133  Bit Score: 88.76  E-value: 2.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037    3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASrTIGLTDDGSW-----FGTGDS 76
Cdd:pfam03205   1 ILGIVGWSGSGKTTLLEKLIPELKARGlRVGTIKHAHHGFDIDKPGKDSWRHRKAGAS-EVLVASPGRWalmheLRDEPE 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 499205037   77 RDLSAVLGSFAPThDYALVEGFSDSALPKVVL 108
Cdd:pfam03205  80 PSLEELLARLSPV-DLVLVEGFKKEPYPKIEV 110
PRK14494 PRK14494
putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing ...
 1-108 2.33e-21

putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional


Pssm-ID: 237731 [Multi-domain]  Cd Length: 229  Bit Score: 85.80  E-value: 2.33e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHlTHEpDIDTEGKDTARHRAGGASRTIGLTDDGSWFGTgDSRDL 79
Cdd:PRK14494   1 MRAIGVIGFKDSGKTTLIEKILKNLKERGyRVATAKH-THH-EFDKPDTDTYRFKKAGAEVVVVSTDETAAFLY-DRMDL 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 499205037  80 SAVLGSFapTHDYALVEGF-SDSALPKVVL 108
Cdd:PRK14494  78 NEILSLL--DADFLLIEGFkELLNIPKILC 105
PRK14489 PRK14489
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; ...
 3-109 2.95e-20

putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional


Pssm-ID: 237727 [Multi-domain]  Cd Length: 366  Bit Score: 84.80  E-value: 2.95e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIgLTDDGSWF----GTGDSR 77
Cdd:PRK14489 207 LLGVVGYSGTGKTTLLEKLIPELIARGyRIGLIKHSHHRVDIDKPGKDSHRLRAAGANPTM-IVCPERWAlmreTPEEAV 285

                         90       100       110
                 ....*....|....*....|....*....|...
gi 499205037  78 DLSAVLGSFAPTH-DYALVEGFSDSALPKVVLG 109
Cdd:PRK14489 286 PFKVLIATFDPEEvDLILVEGFKHEPLPKIQLH 318
PRK14490 PRK14490
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; ...
 4-112 1.55e-15

putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional


Pssm-ID: 237728 [Multi-domain]  Cd Length: 369  Bit Score: 72.00  E-value: 1.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   4 LTVVGPSDSGKTTVVARLAERLAARGPVATVKHLTHEPDIDTEGKDTARHRAGGASrTIGLTDDGS---WFGTGDSRDLS 80
Cdd:PRK14490   8 IAFCGYSGSGKTTLITALVRRLSERFSVGYYKHGCHRFDIDREGKDSDLARKAGAS-TVMISDPEKhalIAGGPPDPLLE 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 499205037  81 AvlGSFApTHDYALVEGFSDSALPKVVLGGRD 112
Cdd:PRK14490  87 R--GAFL-DCDLLLVEGLKELPLPKILLVDRE 115
PRK14495 PRK14495
putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion ...
 1-106 7.02e-13

putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional


Pssm-ID: 172967  Cd Length: 452  Bit Score: 64.70  E-value: 7.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIgLTDDGSWFGT----GD 75
Cdd:PRK14495   1 MRVYGIIGWKDAGKTGLVERLVAAIAARGfSVSTVKHSHHDVDPDPPGSDSHRHRAAGAAEVV-LAGPRRLILTrehrGE 79

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499205037  76 SRDLSAVLGSFAPThDYALVEGFSDSALPKV 106
Cdd:PRK14495  80 PPRLAAILERMAPV-DLVLVEGYKTEPHPKI 109
PRK14491 PRK14491
putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; ...
 1-108 7.39e-13

putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional


Pssm-ID: 237729 [Multi-domain]  Cd Length: 597  Bit Score: 64.63  E-value: 7.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGAS--------RTIGLTDDGSwf 71
Cdd:PRK14491  10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGlRLAVIKHAHHNFDVDQPGKDSYRLRKAGASqmlvasrvRWALMTETPR-- 87

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 499205037  72 gTGDSrDLSAVLGSFAPTH-DYALVEGFSDSALPKVVL 108
Cdd:PRK14491  88 -DGEP-ELPHLLKQIDADKvDIVLVEGFKKLALPKIEL 123
PRK10751 PRK10751
molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
 3-108 1.49e-11

molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional


Pssm-ID: 236750 [Multi-domain]  Cd Length: 173  Bit Score: 58.94  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAARG-PVATVKHLTHEPDIDTEGKDTARHRAGGASRTIgLTDDGSW---FGTGDSR- 77
Cdd:PRK10751   8 LLAIAAWSGTGKTTLLKKLIPALCARGiRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTL-VASQQRWalmTETPDQEe 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 499205037  78 -DLSAVLGSF-APTHDYALVEGFSDSALPKVVL 108
Cdd:PRK10751  87 lDLHYLASRMdASKLDLILVEGFKHEPIAKIAL 119
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 3-31 2.03e-04

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 39.44  E-value: 2.03e-04
                         10        20
                 ....*....|....*....|....*....
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAARGPV 31
Cdd:COG0572    9 IIGIAGPSGSGKTTFARRLAEQLGADKVV 37
ATP_bind_1 pfam03029
Conserved hypothetical ATP binding protein; Members of this family are found in a range of ...
 6-46 2.76e-04

Conserved hypothetical ATP binding protein; Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.


Pssm-ID: 397252 [Multi-domain]  Cd Length: 238  Bit Score: 39.28  E-value: 2.76e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 499205037    6 VVGPSDSGKTTVVARLAERLAARG-PVATV------KHLTHEPDIDTE 46
Cdd:pfam03029   1 VVGPAGSGKTTFVGALSEILPLRGrPVYVVnldpaaENLPYPADIDIR 48
GPN1 cd17870
GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, ...
 3-44 3.55e-04

GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, RNAPII-associated protein 4, and XPA-binding protein 1) is a GTPase is required for nuclear targeting of RNA polymerase II. It forms heterodimers with GPN3.


Pssm-ID: 349779 [Multi-domain]  Cd Length: 241  Bit Score: 39.09  E-value: 3.55e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAARG-PVAT------VKHLTHEPDID 44
Cdd:cd17870    2 VIIVVGMAGSGKTTFVQRLNAYLHDNKkPPYVinldpaVKSLPYPPNID 50
Grc3 COG1341
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and ...
 6-29 9.43e-04

Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440952  Cd Length: 353  Bit Score: 38.08  E-value: 9.43e-04
                         10        20
                 ....*....|....*....|....
gi 499205037   6 VVGPSDSGKTTVVARLAERLAARG 29
Cdd:COG1341   40 VLGPVDSGKSTLTTLLANKLLAEG 63
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
 5-53 1.33e-03

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 37.25  E-value: 1.33e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 499205037   5 TVVGPSDSGKTTVVARLAERLAARGPVATVkhlTHEPDiDTEGKDTARH 53
Cdd:cd01672    4 VFEGIDGAGKTTLIELLAERLEARGYEVVL---TREPG-GTPIGEAIRE 48
PRK13768 PRK13768
GTPase; Provisional
 1-44 1.77e-03

GTPase; Provisional


Pssm-ID: 237498 [Multi-domain]  Cd Length: 253  Bit Score: 37.16  E-value: 1.77e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 499205037   1 MQVLTVVGPSDSGKTTVVARLAERLAARG-PVATV------KHLTHEPDID 44
Cdd:PRK13768   2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGyDVAIVnldpavEYLPYTPDFD 52
PRK04182 PRK04182
cytidylate kinase; Provisional
 3-25 2.70e-03

cytidylate kinase; Provisional


Pssm-ID: 235244 [Multi-domain]  Cd Length: 180  Bit Score: 36.32  E-value: 2.70e-03
                         10        20
                 ....*....|....*....|...
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERL 25
Cdd:PRK04182   2 IITISGPPGSGKTTVARLLAEKL 24
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 2-36 6.71e-03

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 34.33  E-value: 6.71e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 499205037   2 QVLTVVGP-SDSGKTTVVARLAERLAARG-PVATVKH 36
Cdd:cd01983    1 RVIAVTGGkGGVGKTTLAAALAVALAAKGyKVLLIDL 37
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
3-28 8.25e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 35.35  E-value: 8.25e-03
                         10        20
                 ....*....|....*....|....*.
gi 499205037   3 VLTVVGPSDSGKTTVVARLAERLAAR 28
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQ 377
FlhF TIGR03499
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
 2-45 8.76e-03

flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274609 [Multi-domain]  Cd Length: 282  Bit Score: 35.00  E-value: 8.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 499205037    2 QVLTVVGPSDSGKTTVVARLAERLAARGPVATVKHLThepdIDT 45
Cdd:TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFALEHGKKKVALIT----TDT 234
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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