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Conserved domains on  [gi|499232805|ref|WP_010930345|]
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flagellar filament capping protein FliD [Bordetella pertussis]

Protein Classification

flagellar filament capping protein FliD( domain architecture ID 11442561)

flagellar filament capping protein FliD is required for the morphogenesis and elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament

Gene Ontology:  GO:0007155|GO:0009288
PubMed:  27664419

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-452 2.99e-125

Flagellar capping protein FliD [Cell motility];


:

Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 371.10  E-value: 2.99e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   1 MATISSLG-SSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVS-G 78
Cdd:COG1345    1 MASISSLGlGSGLDTDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSSnE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  79 DGLSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGgSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGl 158
Cdd:COG1345   81 SAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTTLGTG-TLTITVGDGKTVTITIDANDTLADIADAINAAGA- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 159 DVRATVISDGNGKhyLMLNNKTEGTETAVTrITVSGNQEVADILDFDAANagasNLTVQLAAQKAELTINGIPVVSDTNT 238
Cdd:COG1345  159 GVTASIVNDGSYR--LVLTSKKTGAANAIT-VSVSGDGALSALLGFDPAS----GMTETQAAQDAKLTVNGITITSSSNT 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 239 VETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQSA--LTGDGTTRNIQSAI 316
Cdd:COG1345  232 FTDAIDGVTLTLKKVTGGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTKDEETAKAgaLLGDSTLRSLQSQL 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 317 AAALR-VATGEGTLRTLSQLGITTDpKTGSLKTDTEKLEAALRDNPADVARIFSGPF---GLGEKVKLATEQILGDEGSI 392
Cdd:COG1345  312 RSALSsPVSGGGSYKSLSDIGITTD-KDGKLELDETKLDKALAEDPDAVAKLFTGDGkttGIATRLDDLLDSYTGSDGTI 390

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 393 KIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAAL 452
Cdd:COG1345  391 TSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLASL 450
 
Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-452 2.99e-125

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 371.10  E-value: 2.99e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   1 MATISSLG-SSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVS-G 78
Cdd:COG1345    1 MASISSLGlGSGLDTDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSSnE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  79 DGLSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGgSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGl 158
Cdd:COG1345   81 SAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTTLGTG-TLTITVGDGKTVTITIDANDTLADIADAINAAGA- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 159 DVRATVISDGNGKhyLMLNNKTEGTETAVTrITVSGNQEVADILDFDAANagasNLTVQLAAQKAELTINGIPVVSDTNT 238
Cdd:COG1345  159 GVTASIVNDGSYR--LVLTSKKTGAANAIT-VSVSGDGALSALLGFDPAS----GMTETQAAQDAKLTVNGITITSSSNT 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 239 VETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQSA--LTGDGTTRNIQSAI 316
Cdd:COG1345  232 FTDAIDGVTLTLKKVTGGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTKDEETAKAgaLLGDSTLRSLQSQL 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 317 AAALR-VATGEGTLRTLSQLGITTDpKTGSLKTDTEKLEAALRDNPADVARIFSGPF---GLGEKVKLATEQILGDEGSI 392
Cdd:COG1345  312 RSALSsPVSGGGSYKSLSDIGITTD-KDGKLELDETKLDKALAEDPDAVAKLFTGDGkttGIATRLDDLLDSYTGSDGTI 390

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 393 KIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAAL 452
Cdd:COG1345  391 TSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLASL 450
fliD PRK08032
flagellar capping protein; Reviewed
 1-449 3.02e-108

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 328.19  E-value: 3.02e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   1 MATISSLG-SSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGD 79
Cdd:PRK08032   1 MASISSLGvGSGLDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSSTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  80 GLSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGGS---IEIVQKDGTTT-TVTLG-EDTSLNGIVKAING 154
Cdd:PRK08032  81 AFSATTDSGASAGKYTISVTQLAQAQSLTTATVSSTKEALGTSDStrtITITQPGRKEPlEIDLTaGQTSLSGIRDAINK 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 155 TDGlDVRATVISDGNGKHYLMLNNKTEGTETAVTrITVSGNQEVADILDFDaANAGASNLTVQLAAQKAELTINGIPVVS 234
Cdd:PRK08032 161 AEG-GVSASIIKVGDGEYRLVLTSKDTGTDNAMT-ISVEGDSKLNDFLNYD-SSTGSGNMTQSVAAQNAKLTVNGIAIER 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 235 DTNTVETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDV--KAEKQS----ALTGDGT 308
Cdd:PRK08032 238 QSNTITDAPEGITLNLKKVTTGNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAvdAGADQSssngALLGDST 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 309 TRNIQSAIAAALRVATGEGTLRTLSQLGITTDPKTGSLKTDTEKLEAALRDNPADVARIFsgpFGLGEKVKLATE----- 383
Cdd:PRK08032 318 LRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALF---VGDGKKTGITTQiatnl 394

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499232805 384 -QILGDEGSIKIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQF 449
Cdd:PRK08032 395 kSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 220-440 1.30e-46

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 160.92  E-value: 1.30e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  220 AQKAELTINGIPVVSDTNTVETAIDGLTLTLTKQSAAP-LTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAE 298
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGeTTLSVSTDTDGIKEAIKDFVDAYNELITTINELTSYTLDEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  299 KQS--ALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTDPKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGE 376
Cdd:pfam07195  81 TKKagALAGDSTLRSILSQLRSVLSSSVSDGSISSLADIGITTDSDYGTLELDEEKLDKALKENPDSVAELFTGDGSRVD 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  377 K------VKLATEQILGDEGSIKIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNN 440
Cdd:pfam07195 161 TgfakrlTDLLKSYVGASNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
 
Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-452 2.99e-125

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 371.10  E-value: 2.99e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   1 MATISSLG-SSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVS-G 78
Cdd:COG1345    1 MASISSLGlGSGLDTDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSSnE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  79 DGLSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGgSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGl 158
Cdd:COG1345   81 SAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTTLGTG-TLTITVGDGKTVTITIDANDTLADIADAINAAGA- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 159 DVRATVISDGNGKhyLMLNNKTEGTETAVTrITVSGNQEVADILDFDAANagasNLTVQLAAQKAELTINGIPVVSDTNT 238
Cdd:COG1345  159 GVTASIVNDGSYR--LVLTSKKTGAANAIT-VSVSGDGALSALLGFDPAS----GMTETQAAQDAKLTVNGITITSSSNT 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 239 VETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQSA--LTGDGTTRNIQSAI 316
Cdd:COG1345  232 FTDAIDGVTLTLKKVTGGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTKDEETAKAgaLLGDSTLRSLQSQL 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 317 AAALR-VATGEGTLRTLSQLGITTDpKTGSLKTDTEKLEAALRDNPADVARIFSGPF---GLGEKVKLATEQILGDEGSI 392
Cdd:COG1345  312 RSALSsPVSGGGSYKSLSDIGITTD-KDGKLELDETKLDKALAEDPDAVAKLFTGDGkttGIATRLDDLLDSYTGSDGTI 390

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 393 KIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAAL 452
Cdd:COG1345  391 TSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLASL 450
fliD PRK08032
flagellar capping protein; Reviewed
 1-449 3.02e-108

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 328.19  E-value: 3.02e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   1 MATISSLG-SSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGD 79
Cdd:PRK08032   1 MASISSLGvGSGLDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSSTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  80 GLSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGGS---IEIVQKDGTTT-TVTLG-EDTSLNGIVKAING 154
Cdd:PRK08032  81 AFSATTDSGASAGKYTISVTQLAQAQSLTTATVSSTKEALGTSDStrtITITQPGRKEPlEIDLTaGQTSLSGIRDAINK 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 155 TDGlDVRATVISDGNGKHYLMLNNKTEGTETAVTrITVSGNQEVADILDFDaANAGASNLTVQLAAQKAELTINGIPVVS 234
Cdd:PRK08032 161 AEG-GVSASIIKVGDGEYRLVLTSKDTGTDNAMT-ISVEGDSKLNDFLNYD-SSTGSGNMTQSVAAQNAKLTVNGIAIER 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 235 DTNTVETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDV--KAEKQS----ALTGDGT 308
Cdd:PRK08032 238 QSNTITDAPEGITLNLKKVTTGNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAvdAGADQSssngALLGDST 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 309 TRNIQSAIAAALRVATGEGTLRTLSQLGITTDPKTGSLKTDTEKLEAALRDNPADVARIFsgpFGLGEKVKLATE----- 383
Cdd:PRK08032 318 LRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALF---VGDGKKTGITTQiatnl 394

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499232805 384 -QILGDEGSIKIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQF 449
Cdd:PRK08032 395 kSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 220-440 1.30e-46

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 160.92  E-value: 1.30e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  220 AQKAELTINGIPVVSDTNTVETAIDGLTLTLTKQSAAP-LTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAE 298
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGeTTLSVSTDTDGIKEAIKDFVDAYNELITTINELTSYTLDEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  299 KQS--ALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTDPKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGE 376
Cdd:pfam07195  81 TKKagALAGDSTLRSILSQLRSVLSSSVSDGSISSLADIGITTDSDYGTLELDEEKLDKALKENPDSVAELFTGDGSRVD 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  377 K------VKLATEQILGDEGSIKIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNN 440
Cdd:pfam07195 161 TgfakrlTDLLKSYVGASNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
fliD PRK06798
flagellar hook-associated protein 2;
4-406 3.49e-26

flagellar hook-associated protein 2;


Pssm-ID: 180698 [Multi-domain]  Cd Length: 440  Bit Score: 110.25  E-value: 3.49e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   4 ISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTlSAVKAVVSGDG-LS 82
Cdd:PRK06798  14 IWNLGNNMIDTSNFVELELQALEMKKTPYTNQKQSLTSEKLLYASLKKEFSSFLQTFKDLTTFKG-NEKKVTLSQEGyIT 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  83 VKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGGSIEIVQKDgttttVTLGEDTSLNGIVKAINgtDGlDVRA 162
Cdd:PRK06798  93 VQADASAIAGTYNITVENLAQRHQITSKPVPDIDAKIGVDETIKINGKE-----IKVTKDMTYKDLINKIN--SG-NYGV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 163 TVISDGNgkhYLMLNNKTEGTETAVtRITVSGNQEVADILDFDAANAGASNLTvqlAAQKAELTINGIPVVSDTNTVETa 242
Cdd:PRK06798 165 SAYTLGN---KIFFTSTTEGEEGSI-KFTDGDSGFLEAIGLVQSSGVAANDIT---AAENAEYTINGIKGTSATNKIET- 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 243 IDGLTLTLTKQSAAPLTVTVS-SDPSVAATAVNDFVKAYNGLQTTIadltafDVKAEKQSALTGDGTTRNIQSAIAAalr 321
Cdd:PRK06798 237 IPGVTINLKKETTEPIKLTIQdSNVKDAANLIKKMVDEYNKAVSTV------DLFAGKGGALQGSAIMFSINRAMNN--- 307

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 322 VATGEGTLRTLSQLGITTDpKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGLEE 401
Cdd:PRK06798 308 VFTFSQDGNYLFSFGIQVD-KEGTMKVDEEALKKALKENPDAAKQFFFGINGLGKEMEKSLDKIFGDEGIIGERSKSIDN 386


                 ....*
gi 499232805 402 TLESL 406
Cdd:PRK06798 387 RVSKL 391
PRK12765 PRK12765
flagellar filament capping protein FliD;
3-370 6.35e-24

flagellar filament capping protein FliD;


Pssm-ID: 237194 [Multi-domain]  Cd Length: 595  Bit Score: 104.59  E-value: 6.35e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   3 TISSLG--SSGLELEGILEKLQAAEEK-KLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSiDTLSAVKAVVSGD 79
Cdd:PRK12765   5 SLSSLGfgSDGVLSQDTIDKLKEADQKaQIDPITTKIEENTTKQKDLTAIKTLLSNFKTSVSSLAD-ETSYLKRKVSISD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  80 GLSVK-TAAGAVPGQ-YTVNIDKLATAQNLQSGQLDSRTDKHGTGGSIEI---VQKDGTTTTVTLGEDTSLNGIVKAING 154
Cdd:PRK12765  84 NPPASvTVNSGVNLQsMKINVSQLAQKDVYQSKGFANDSSFVNATLTGETdltIFSNGKEYTITVDKSTTYRDLADKINE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 155 TDGLDVRATVISDGNGKHY-LMLNNKTEGTETAVT----RITVSGNQEVADILD----------FDAANAGASNLTVQLA 219
Cdd:PRK12765 164 ASGGKIQAKILNVGGKNPYrLVLQSKETGADNAISfyagKKDAQSDNDAENIFKslgwdlddtsTIDPGKDKKGYGIKDA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 220 ------AQKAELTINGIPVVSDTNTVETAIDGLTLTLTKQSAAplTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAF 293
Cdd:PRK12765 244 slhiqtAQNAEFTYNGIKITRSSNTIDDLGVGVTLTLNKTGSI--NFDIQQDTEGVTKAVEDLVDAYNNLVTNLNAATSY 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 294 DVKAEKQSALTGDGTTRNIQSAIAAALRVATGEGTL---RTLSQLGITTDpKTGSLKTDTEKLEAALRDNPADVARIFSG 370
Cdd:PRK12765 322 NSETGTKGTFQGVSEITSIRSSILADLFSQVVDGTDedgKSLQDFGLSLN-SDGTLSFDSSKFEQKVSEDPDSTQSFFSG 400
fliD PRK07737
flagellar hook-associated protein 2;
9-449 2.97e-22

flagellar hook-associated protein 2;


Pssm-ID: 236082 [Multi-domain]  Cd Length: 501  Bit Score: 99.11  E-value: 2.97e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   9 SSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDGlSVKTAAG 88
Cdd:PRK07737   9 ASGMDIDDIVSKLMKTERAPLDKLTQKKQTLEWQRDSYREMNTLLKDLDDYIFNNITRQSTYLKKTVTSSNE-SVVTATA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  89 ---AVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGGSIEIVQKDGTTT---TVTLGEDTSLNGIVKAINGTDgLDVRA 162
Cdd:PRK07737  88 sssAANGSTTMQVTQLATAATWKSSAKTSFYTGADQTLTFNVTNPGETTAktvEISVKQTDTLDDVISKLNSSD-LGVSA 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 163 TVISDGNGKHY---LMLNNKTEGTETAVTRITVSGNQEVADILDFDAANAGaSNLTVQLAAQKAELTINGIPVVSDTNTV 239
Cdd:PRK07737 167 FKDKIWNGTEYvetIAITSKATGAGASIQAADGATASFFSQQLGFTNLDAD-NELTAKTEGQNAQVTINGLQTERTSNTF 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 240 EtaIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIAD------------LTAFDVKA--EKQ----- 300
Cdd:PRK07737 246 T--INGVTYTLKNTTAGTVTLSVATDVDGIFNKIKDFVDKYNELIDKINAklkeeryrdyppLTDEQKEAmtEKQielwe 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 301 -----SALTGDGTTRNIQSAIAAAL--RVATGEGTLRTLSQLGITTDPK---TGSLKTDTEKLEAALRDNPADVARIFSG 370
Cdd:PRK07737 324 ekaksGLLRGDSILSSALSKMRMDFytKVEGIDGGFSQLAQIGITTSSNyldGGKLEIDETKLRQKIKENPDAVYQLFNS 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 371 ------------PFGLGEKVKLATEQILGDEGS--IKIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVT 436
Cdd:PRK07737 404 ggsssnynekgiARRLRDTLKETIKSIEQKAGNttMTNQQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQ 483

                        490
                 ....*....|...
gi 499232805 437 QMNNTSNYLSQQF 449
Cdd:PRK07737 484 KANEQSMYLMNAL 496
FliD_N pfam02465
Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 10-105 2.20e-18

Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the N-terminal region of this family of proteins.


Pssm-ID: 460566 [Multi-domain]  Cd Length: 97  Bit Score: 79.92  E-value: 2.20e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   10 SGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDG-LSVKTAAG 88
Cdd:pfam02465   1 SGLDTDSIVDQLMAAERAPLDRLEQQKTTLEWKQSAYGELNSKLSSLQSALKALSSSSTFNAKKATSSNESvVTATASSG 80

                          90
                  ....*....|....*..
gi 499232805   89 AVPGQYTVNIDKLATAQ 105
Cdd:pfam02465  81 AAAGSYSIEVTQLAQAQ 97
fliD PRK08724
flagellar filament capping protein FliD;
212-401 2.43e-16

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 81.46  E-value: 2.43e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 212 SNLTVQLAAQKAELTINGIP-VVSDTNTVETAIDGLTLTL---TKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTI 287
Cdd:PRK08724 430 SGMTEVQSAQDSMVVLDGVAqLSSNNNVIEDAIEGVDLTLkgkTDKNKPPAEIGVEYDRQSVRNDIEQFVAAYNQFYQTS 509

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 288 ADLTAFDVKAEKQSALTGDGTTRNIQSAIAAAL--RVATGEGTLRTLSQLGITTDpKTGSLKTDTEKLEAALRDNPADVA 365
Cdd:PRK08724 510 KALSGVDPATGQKGPLAGDSTVRSADSRLKSVFssSIEQAPENLKSLTEFGITTT-RQGTLEINYDMLDRQLNNNFNKLE 588

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 499232805 366 RIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGLEE 401
Cdd:PRK08724 589 EFFGGNTGFAKRVEDAIQSMTGVTGSIRTREKSLRE 624
fliD PRK06664
flagellar hook-associated protein FliD; Validated
 16-445 6.38e-16

flagellar hook-associated protein FliD; Validated


Pssm-ID: 235848 [Multi-domain]  Cd Length: 661  Bit Score: 80.19  E-value: 6.38e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  16 GILEKLQAAEEKKLTLITARQASYETRISaysKIQAAVEAVQKAAATLGSIDTL-----SAVKAVVSGDGLSVKTAAGAV 90
Cdd:PRK06664 200 GLVGELKTNFPPNEQPIVYGQSSSTNKLF---FTENGIVLEPLSEQSIDIPETIeikkrSKIEFEVSYEDASEEEIENKI 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  91 ---PGQYT---VNIDKLATAQNLQSGQLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVkAINGTDGLDVRATV 164
Cdd:PRK06664 277 vfnPGEATfegAKVENEDSQVDLESDLKLPKEKKYIQMNMLKIESKEGHSLKLPPINASDNFEKV-ELPLGELSDLKALN 355

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 165 ISDGNgkhylmlNNKTegtetavtrITVSgNQEVADILDFDaanaGASNLTVQLAAQKAELTINGIPVVSDTNTVETAID 244
Cdd:PRK06664 356 IENNA-------NNKA---------IVIR-NIEIFDPKARG----GALPVNAKSEAKDAKIKFDGVEVERDKNEITDLIP 414

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 245 GLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFD-----------VKAEKQSA------LTGDG 307
Cdd:PRK06664 415 GVTLNLHKASEDPVTLKIEPDYEKIKNLIIEFVAAYNEVLAEINIVTSNEkssiieeltylSDEEKEEAyknlglLRGEF 494

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 308 TTRNIQS---AIAAALRVATGEGTLRTLSQLGITT--------DPKTGSLKTDTEKLEAALRDNPADVARIFSGPF---- 372
Cdd:PRK06664 495 TLLRLKSrlkTIISSSYPTSDDNAFRMLNQIGISTnsvgssggLIQDGYLELDEKKLDEVLKENPDSVRELFAFDSngda 574

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499232805 373 ----GLGEKVKLATEQILGDEGSIKIRQEGLEETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYL 445
Cdd:PRK06664 575 vmdnGVAKMLLEYLSPYTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYL 651
fliD PRK08453
flagellar filament capping protein FliD;
99-443 3.49e-13

flagellar filament capping protein FliD;


Pssm-ID: 181432 [Multi-domain]  Cd Length: 673  Bit Score: 71.79  E-value: 3.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  99 DKLATAQNLQSGQLDsrtdkhgtgGSIEIVQKDGTTTTVTLGEDTS---LNGIVKAINGTDGLdvraTVISDGNGKhyLM 175
Cdd:PRK08453 318 DLLKSSRTIKEGKLE---------GVISIGGIKLDLSALTKEGNTSeenADAIAQAINAKAGL----YAFKNAEGK--LV 382

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 176 LNNKTegtetavTRITVSGNQEVA-DILDFDAANAGASNLTVQL-----------AAQKAELTINGIPVVSDTNTVETAI 243
Cdd:PRK08453 383 INSKT-------GMVTIKGEDALGkKSLKDLGLKAGTVQSYEASqetlfmsknlqKASDAKFTYNGVSITRPTNEVNDVI 455

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 244 DGLTLTL--TKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAALR 321
Cdd:PRK08453 456 SGVNITLeqTTEPNKPAIISVSRDNQAIIDSLKEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRSIRSSLNNVFS 535

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805 322 VAT-GEGTLRTLSQLGITTDPKtGSLKTDTEKLEAALRDNPADVARIFSGP-----FGLGEKVKLATEQ--------ILG 387
Cdd:PRK08453 536 YSVhTDNGVESLMKYGLSLDEK-GVMTLDEAKLSSALNSDPKATQDFFYGSdskdmGGREIHQEGIFSKfnqvianlIDG 614

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499232805 388 DEGSIKIRQEGLEETLESLQNQYDR--QKLSIAATIEAYRkqFVQLDVFVTQMNNTSN 443
Cdd:PRK08453 615 GNAKLKIYEDSLTRDAKSLTKDKENaqELLKTRYDIMAER--FAAYDSQISKANQKFN 670
fliD PRK08724
flagellar filament capping protein FliD;
9-180 7.82e-07

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 51.41  E-value: 7.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   9 SSGLELEGILEKLQAAEE-KKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDGLSVKTAA 87
Cdd:PRK08724   9 SGGMDINSMVSKIVDAERvPKQQRIDNERTDIDTSISAYGRLRESLDTMKNLMTNFRQEKAFAVRTVDTSDEDVVSATAT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  88 -GAVPGQYTVNIDKLATAQNLQSGQLDsRTDKHGTgGSIEIVQKDgTTTTVTLGEDTSLNGIVKAINGT-DGLDVRATVI 165
Cdd:PRK08724  89 tDAIAGKYAIDVLQLAQSHKVASDVLD-EDAKFGP-GKLQISLGD-KSFTLDVVGNSKLVDIVRGINGAkSNPGVRASII 165

                        170
                 ....*....|....*
gi 499232805 166 SDGNGKHYLMLNNKT 180
Cdd:PRK08724 166 NDVEGPRLILASNVS 180
fliD PRK08453
flagellar filament capping protein FliD;
1-182 3.86e-04

flagellar filament capping protein FliD;


Pssm-ID: 181432 [Multi-domain]  Cd Length: 673  Bit Score: 42.90  E-value: 3.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805   1 MATISSLG-SSGLELEGILEKLQAAEEK-KLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSG 78
Cdd:PRK08453   3 IGSLSSLGlGSKVLNYDVIDKLKDADEKaLIAPLDKKMEQNVEKQKALVEIKTLLSALKSPVKTLSDYSTYLSRKSNVTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499232805  79 DGLSVKTAAGaVPGQ-YTVNIDKLATAQNLQSG-QLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTD 156
Cdd:PRK08453  83 DALSASVGAG-VPIQdIKVDVQNLAQGDINELGaKFSSRDDVFSQVDTTLKFYTQGKDYAIDIKAGMTLGDVAQSITDAT 161

                        170       180
                 ....*....|....*....|....*..
gi 499232805 157 GLDVRATVISDGNGKHY-LMLNNKTEG 182
Cdd:PRK08453 162 NGEVMGIVMKTGGNDPYqLMINSKNTG 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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