NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499233454|ref|WP_010930994|]
View 

iron ABC transporter permease [Bordetella pertussis]

Protein Classification

ABC transporter permease( domain architecture ID 11439550)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
42-572 3.52e-125

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 378.73  E-value: 3.52e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  42 PVGIIALNSWRDDLTgqwslvNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAF 121
Cdd:COG1178   27 PLLALLLRAFTDGLA------NFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 122 ITPSFIGALGWILLAAPNsGWLNVWLRQWLGGDSPlNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGG 201
Cdd:COG1178  101 ALPPYVVALAWIALFGPN-GLLNTLLRALFGLEPP-DIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 202 GILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAFLLTpaRVPVVTTKLaefYQ--MFPPELNLAAAYCMPLLLMTG 279
Cdd:COG1178  179 SPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG--GYTTLTTAI---YQawLGDFDLGAAAALALVLLLLVL 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 280 GLFFLRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGqgpswDNLTLHWYR 359
Cdd:COG1178  254 LLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD-----DNLTLDNYR 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 360 wAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPF-YGL 438
Cdd:COG1178  329 -FVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLpLLL 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 439 YGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAV 518
Cdd:COG1178  408 YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATL 487

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499233454 519 FLITPQTNVMTTLIYNYKDGGNYEAVCATSnVLLLGTILIVMLgrLLTGLARRR 572
Cdd:COG1178  488 LLRPPGFETLAVLIYQLASSGRYGEAAALA-LLLVLVSLLPVL--LLERLLGRR 538
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
42-572 3.52e-125

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 378.73  E-value: 3.52e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  42 PVGIIALNSWRDDLTgqwslvNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAF 121
Cdd:COG1178   27 PLLALLLRAFTDGLA------NFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 122 ITPSFIGALGWILLAAPNsGWLNVWLRQWLGGDSPlNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGG 201
Cdd:COG1178  101 ALPPYVVALAWIALFGPN-GLLNTLLRALFGLEPP-DIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 202 GILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAFLLTpaRVPVVTTKLaefYQ--MFPPELNLAAAYCMPLLLMTG 279
Cdd:COG1178  179 SPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG--GYTTLTTAI---YQawLGDFDLGAAAALALVLLLLVL 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 280 GLFFLRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGqgpswDNLTLHWYR 359
Cdd:COG1178  254 LLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD-----DNLTLDNYR 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 360 wAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPF-YGL 438
Cdd:COG1178  329 -FVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLpLLL 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 439 YGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAV 518
Cdd:COG1178  408 YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATL 487

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499233454 519 FLITPQTNVMTTLIYNYKDGGNYEAVCATSnVLLLGTILIVMLgrLLTGLARRR 572
Cdd:COG1178  488 LLRPPGFETLAVLIYQLASSGRYGEAAALA-LLLVLVSLLPVL--LLERLLGRR 538
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 61-575 3.96e-47

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 173.33  E-value: 3.96e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454   61 LVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAApNS 140
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG-NQ 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  141 GWLnvwlRQWLGGDSplnIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIV 220
Cdd:TIGR03262 119 GLL----KGLLGGFS---IYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLI 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  221 AGFILSFIQGMTLFGVPAFLltPARVPVVTTklaEFYQMFPPELNLA-AAYCMPLLLMTGGLFFLRRRILGRRQYVMIGG 299
Cdd:TIGR03262 192 SAAFVVFTLVITDFGVPKVI--GGDYNVLAT---DIYKQVIGQQNFPmGAVVGVLLLLPALLAFGIDRAIQRRQRAQLSS 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  300 KARGSRlVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWgqgPSWDNLTLHWYRWAVLDNpQTQSAIVNSLLYA 379
Cdd:TIGR03262 267 RSVPYQ-PKPNRVRDAACLVYCAIISAALLAVVGMAVYASLVKFW---PYNLSLTLKHYNFDLMDG-GGWEAYKNSLRLA 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  380 TMAATVCLLLGVVVAYMVER----KLFRGAWALGAtaSVPIIIPGIVLSVG---FFSAFTQPFYGLYGTGALLVLAFVTT 452
Cdd:TIGR03262 342 ATTALIGTILVFGGAYLIEKtrgfGLLRGVLRFLA--ILPMAVPGLVLGLGyifFFNAPTNPLNGLYGTMALLVLCTVVH 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  453 FLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTLI 532
Cdd:TIGR03262 420 FYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAI 499

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|...
gi 499233454  533 YNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARRRGAA 575
Cdd:TIGR03262 500 LNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRTQA 542
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 347-566 1.40e-16

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 79.64  E-value: 1.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 347 GPSWDNLTLHWYRwAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVG 426
Cdd:PRK09500  35 GINWKGFTTKWYE-LLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAIS 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 427 FFSAFTqpFYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLV 506
Cdd:PRK09500 114 LLVLFM--LLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLS 191

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 507 FIPVMRELSVAVFLITPQTNVMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLT 566
Cdd:PRK09500 192 FTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLA 251
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-278 2.26e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 2.26e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  77 MLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSGWlnvwlrqwlggdsP 156
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW-------------G 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 157 LNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGV 236
Cdd:cd06261   68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 499233454 237 PAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMT 278
Cdd:cd06261  148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 160-288 1.17e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.06  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  160 YSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAF 239
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 499233454  240 LLTPARVpVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRI 288
Cdd:pfam00528 130 LGSWPGL-GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
42-572 3.52e-125

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 378.73  E-value: 3.52e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  42 PVGIIALNSWRDDLTgqwslvNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAF 121
Cdd:COG1178   27 PLLALLLRAFTDGLA------NFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 122 ITPSFIGALGWILLAAPNsGWLNVWLRQWLGGDSPlNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGG 201
Cdd:COG1178  101 ALPPYVVALAWIALFGPN-GLLNTLLRALFGLEPP-DIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 202 GILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAFLLTpaRVPVVTTKLaefYQ--MFPPELNLAAAYCMPLLLMTG 279
Cdd:COG1178  179 SPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG--GYTTLTTAI---YQawLGDFDLGAAAALALVLLLLVL 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 280 GLFFLRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGqgpswDNLTLHWYR 359
Cdd:COG1178  254 LLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD-----DNLTLDNYR 328

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 360 wAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPF-YGL 438
Cdd:COG1178  329 -FVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLpLLL 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 439 YGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAV 518
Cdd:COG1178  408 YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATL 487

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499233454 519 FLITPQTNVMTTLIYNYKDGGNYEAVCATSnVLLLGTILIVMLgrLLTGLARRR 572
Cdd:COG1178  488 LLRPPGFETLAVLIYQLASSGRYGEAAALA-LLLVLVSLLPVL--LLERLLGRR 538
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 61-575 3.96e-47

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 173.33  E-value: 3.96e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454   61 LVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAApNS 140
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG-NQ 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  141 GWLnvwlRQWLGGDSplnIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIV 220
Cdd:TIGR03262 119 GLL----KGLLGGFS---IYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLI 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  221 AGFILSFIQGMTLFGVPAFLltPARVPVVTTklaEFYQMFPPELNLA-AAYCMPLLLMTGGLFFLRRRILGRRQYVMIGG 299
Cdd:TIGR03262 192 SAAFVVFTLVITDFGVPKVI--GGDYNVLAT---DIYKQVIGQQNFPmGAVVGVLLLLPALLAFGIDRAIQRRQRAQLSS 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  300 KARGSRlVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWgqgPSWDNLTLHWYRWAVLDNpQTQSAIVNSLLYA 379
Cdd:TIGR03262 267 RSVPYQ-PKPNRVRDAACLVYCAIISAALLAVVGMAVYASLVKFW---PYNLSLTLKHYNFDLMDG-GGWEAYKNSLRLA 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  380 TMAATVCLLLGVVVAYMVER----KLFRGAWALGAtaSVPIIIPGIVLSVG---FFSAFTQPFYGLYGTGALLVLAFVTT 452
Cdd:TIGR03262 342 ATTALIGTILVFGGAYLIEKtrgfGLLRGVLRFLA--ILPMAVPGLVLGLGyifFFNAPTNPLNGLYGTMALLVLCTVVH 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  453 FLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTLI 532
Cdd:TIGR03262 420 FYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAI 499

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|...
gi 499233454  533 YNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARRRGAA 575
Cdd:TIGR03262 500 LNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRTQA 542
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 311-572 3.77e-41

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 149.49  E-value: 3.77e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 311 RWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGQGPSWDNLTLHWYRwAVLDNPQTQSAIVNSLLYATMAATVCLLLG 390
Cdd:COG1177    3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYA-ELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 391 VVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQpfYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISP 470
Cdd:COG1177   82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDP 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 471 DLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTLIYNYKDGGNYEAVCATSNV 550
Cdd:COG1177  160 SLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTL 239

                        250       260
                 ....*....|....*....|..
gi 499233454 551 LLLGTILIVMLGRLLTGLARRR 572
Cdd:COG1177  240 LILLSLLLLLLAERLRRRGERR 261
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 42-293 1.55e-33

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 129.50  E-value: 1.55e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  42 PVGIIALNSWRD-----DLTGQWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVL 116
Cdd:COG1176   29 PLLLLLVYSFTTrdpygGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 117 VLAAFITPSFIGALGWILLAAPNsGWLNVWLrQWLG-GDSPLNIYSMWGAVFVCAVYT-VPFTFTIVATALDEMAVELED 194
Cdd:COG1176  109 VILPFWTSFLVRTYAWIVLLGRN-GLLNSLL-LALGlIDEPLRLLYTEFAVVIGLVYVyLPFMVLPLYAALEKIDPSLLE 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 195 ASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAfLLTPARVPVVTTkLAEFYQMFPPELNLAAAYCMPL 274
Cdd:COG1176  187 AARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPA-LLGGGKVLMIGN-LIYQQFLSALNWPLAAALAVVL 264

                        250
                 ....*....|....*....
gi 499233454 275 LLMTGGLFFLRRRILGRRQ 293
Cdd:COG1176  265 LLIVLLVLLLYLRLLRRRR 283
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 59-292 6.43e-29

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 115.59  E-value: 6.43e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  59 WSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGwILLAAP 138
Cdd:COG1177   45 FTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVA-LLLLFS 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 139 NSGWLNvwlrqwlggdsplniySMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPA 218
Cdd:COG1177  124 ALGLSG----------------GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPG 187

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499233454 219 IVAGFILSFIQGMTLFGVpAFLLTPARVPVVTTKLAEFYQ-MFPPELNlaaAYCMPLLLMTGGLFFLRRRILGRR 292
Cdd:COG1177  188 ILAGALLAFTLSFDEFVI-TLFLAGPGVTTLPVYIYSMIRrGISPEIN---ALSTLLILLSLLLLLLAERLRRRG 258
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 311-574 2.24e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 106.00  E-value: 2.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 311 RWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWGQGPSWDNLTLHWYRwAVLDNPQTQSAIVNSLLYATMAATVCLLLG 390
Cdd:COG1176    9 LRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYA-RLFTDPLYLKVLLRTLWIALLTTLICLLLG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 391 VVVAYMVERKLFRGAWALGATASVPIIIPGIVLSV---------GFFSAF-------TQPFYGLYGTGALlVLAFVTTFL 454
Cdd:COG1176   88 YPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYawivllgrnGLLNSLllalgliDEPLRLLYTEFAV-VIGLVYVYL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 455 PIA----YshggAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTT 530
Cdd:COG1176  167 PFMvlplY----AALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGN 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 499233454 531 LIYN-YKDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARRRGA 574
Cdd:COG1176  243 LIYQqFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
63-292 2.41e-22

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 97.51  E-value: 2.41e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  63 NYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRtDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSGW 142
Cdd:COG1175   64 NYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGL 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 143 LNVWLR-------QWLGGDSplniYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLV 215
Cdd:COG1175  143 LNALLGalglepiNWLGDPS----LALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLL 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 216 MPAIVAGFILSFIQGMTLFGVPaFLLTPARVPVVTTKLA-EFYQMF--PPELNLAAAYCMPLLLMTGGLFFLRRRILGRR 292
Cdd:COG1175  219 RPTILFVLVLSTIGALQVFDLV-YVLTGGGPGNSTTTLVlYIYQTAfqQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 57-288 3.39e-22

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 96.70  E-value: 3.39e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  57 GQWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLA 136
Cdd:COG0395   56 SEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 137 ApNSGWLNvwlrqwlggdsplniySMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVM 216
Cdd:COG0395  136 R-QLGLLN----------------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSK 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499233454 217 PAIVAGFILSFIQGMTLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCM----PLLLMtggLFFLRRRI 288
Cdd:COG0395  199 PALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAAAViatlPVLIL---FLFLQRYF 271
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 60-293 9.87e-22

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 95.20  E-value: 9.87e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  60 SLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPN 139
Cdd:COG0555   39 GWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 140 sGWLNVWLrqwlggdSPLNI---YSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVM 216
Cdd:COG0555  119 -GWLGQLL-------APLGIkvaFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLL 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 217 PAIVAGFILSFIQGMTLFGvpAFLLTPARVPVVT--------TKLAEFyqmfppELNLAAAYCMPLLLMTGGLFFLRRRI 288
Cdd:COG0555  191 PALLTGFALAFARALGEFG--AVIFIAGNLPMKTeilplliyLKLEEG------DYAGATAIALVLLLISFLLLLLINLL 262


                 ....*
gi 499233454 289 LGRRQ 293
Cdd:COG0555  263 QRRSR 267
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 302-571 2.61e-19

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 87.88  E-value: 2.61e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 302 RGSRLVGLGRWrwpaLLGALLVPAVTVFLPYASLTLVSLskawgqGPSWDNLtlhwyrWAVLDNPQTQSAIVNSLLYATM 381
Cdd:COG0555    2 SRRVLPGFGLT----LGLTLLYLSLIVLLPLAALVLKAA------GLGWAEF------WAVLTSPRVLAALKLSLGTALI 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 382 AATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPfyGLYG------------TGALLVLAF 449
Cdd:COG0555   66 AALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN--GWLGqllaplgikvafTPLGIVLAQ 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 450 VTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFL---ITPQTN 526
Cdd:COG0555  144 TFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIagnLPMKTE 223

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 499233454 527 VMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARR 571
Cdd:COG0555  224 ILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQRRSRR 268
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 366-572 4.15e-18

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 83.56  E-value: 4.15e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 366 PQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLsvGFF--------SAFTQPFYG 437
Cdd:COG4149    3 PEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVL--GFYllllfgrnGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 438 LYG-------TGALLVLAFVTtfLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPV 510
Cdd:COG4149   81 LFGislvftwTGAVLASVVVS--LPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARA 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499233454 511 MRELSVAVFL---ITPQTNVMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARRR 572
Cdd:COG4149  159 LGEFGATLMFagnIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 80-291 7.70e-17

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 79.21  E-value: 7.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454   80 SLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNS--GWLNVWLRQWLGgdspl 157
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGpiGKLLELFGISLV----- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  158 niYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGvp 237
Cdd:TIGR02141  78 --FTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFG-- 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 499233454  238 AFLLTPARVPVVTTKLA-EFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGR 291
Cdd:TIGR02141 154 ATLMFAGNIPGETQTIPlAIYDAVESDYELAHQLSLVLLAISLIVLLLVELLNKR 208
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 347-566 1.40e-16

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 79.64  E-value: 1.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 347 GPSWDNLTLHWYRwAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVG 426
Cdd:PRK09500  35 GINWKGFTTKWYE-LLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAIS 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 427 FFSAFTqpFYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLV 506
Cdd:PRK09500 114 LLVLFM--LLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLS 191

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 507 FIPVMRELSVAVFLITPQTNVMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLT 566
Cdd:PRK09500 192 FTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLA 251
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 311-561 2.94e-16

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 79.37  E-value: 2.94e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 311 RWRWPALLGALLVPAVTVFLPYASLTLVSLS----------KAWGQGPSWDNLTlhwyrwAVLDNPQTQSAIVNSLLYAT 380
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKppaeifsgppSLLPSEFTLENYR------AAFTDGPFGRYLLNSLIVAV 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 381 MAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQpfYGLYGTGALLVLAFVTTFLPIA--- 457
Cdd:COG0395   85 VSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ--LGLLNTYWGLILPYLAFGLPFGifl 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 458 -YSHggaiIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVA-VFLITPQTNVMTTLIYNY 535
Cdd:COG0395  163 lRQF----FRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDLRTLPVGLASF 238

                        250       260
                 ....*....|....*....|....*...
gi 499233454 536 KD--GGNYEAVCATSNVLLLGTILIVML 561
Cdd:COG0395  239 QGqyGTDWGLLMAAAVIATLPVLILFLF 266
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 58-235 7.06e-15

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 75.08  E-value: 7.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454   58 QWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAA 137
Cdd:TIGR00969  43 SKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYG 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  138 PNsGWLNVWLRQWlggdSPLNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMP 217
Cdd:TIGR00969 123 SN-GWLGSWLASF----GIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRW 197

                         170
                  ....*....|....*...
gi 499233454  218 AIVAGFILSFIQGMTLFG 235
Cdd:TIGR00969 198 ALLYGVVLTFARALGEFG 215
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 48-283 1.48e-14

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 74.75  E-value: 1.48e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  48 LNSWRDD-LTGQWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSF 126
Cdd:PRK10683  69 LMEWADGqLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 127 IGALGWILLAApNSGWLNVWLrQWLG-GDSPLNIYSMWGAVFVCAVYT-VPFTFTIVATALDEMAVELEDASAMLGGGIL 204
Cdd:PRK10683 149 IRVYAWMGILK-NNGVLNNFL-LWLGvIDQPLTILHTNLAVYIGIVYAyLPFMVLPIYTALTRIDYSLVEAALDLGARPL 226

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499233454 205 RTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFF 283
Cdd:PRK10683 227 KTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWF 305
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-278 2.26e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 2.26e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  77 MLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSGWlnvwlrqwlggdsP 156
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW-------------G 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 157 LNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGV 236
Cdd:cd06261   68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 499233454 237 PAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMT 278
Cdd:cd06261  148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
58-240 2.58e-14

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 73.63  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  58 QWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAA 137
Cdd:PRK10971  41 QMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 138 PNSgwlnvWLRQWLGGDSPLNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMP 217
Cdd:PRK10971 121 VNG-----WYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSP 195

                        170       180
                 ....*....|....*....|...
gi 499233454 218 AIVAGFILSFIQGMTLFGVPAFL 240
Cdd:PRK10971 196 ALLAGVALSFTRSLGEFGAVIFI 218
modB PRK09421
molybdate ABC transporter permease subunit;
70-235 5.42e-14

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 71.49  E-value: 5.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  70 TPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLV-LAAFITPSFIGALgwILLAAPNSGWLNVWLR 148
Cdd:PRK09421   4 SDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLhLPLVLPPVVTGYL--LLISMGRRGFIGQWLY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 149 QWLGgdspLNIYSMW-GAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSF 227
Cdd:PRK09421  82 EWFG----ISFAFSWrGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157


                 ....*...
gi 499233454 228 IQGMTLFG 235
Cdd:PRK09421 158 ARSLGEFG 165
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
296-561 5.56e-14

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 72.86  E-value: 5.56e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 296 MIGGKARGSRLVGLGRWRWPAL--LGALLVPAVTVFLPYASLTLVSLSKAWGQGPSWDNLTLHWYRWaVLDNPQTQSAIV 373
Cdd:COG1175    1 MTTTTSAAARRRRRRRRLAAYLflLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYAR-LFTDPRFWNALG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 374 NSLLYATMAATVCLLLGVVVAYMVERKlFRGAWALGATASVPIIIPGIVLSVGFFSAFtQPFYGL--------------- 438
Cdd:COG1175   80 NTLLFTVVSVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWLF-NPDYGLlnallgalglepinw 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 439 --YGTGALLVLAFVTTFLPIAYShggAII-----KTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVM 511
Cdd:COG1175  158 lgDPSLALPAVIIVTVWKGTGFN---MLIflaglQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGAL 234

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499233454 512 RELSVaVFLIT-----PQTNVMTTLIYNYK-DGGNYEAVCATSNVLLLGTILIVML 561
Cdd:COG1175  235 QVFDL-VYVLTgggpgNSTTTLVLYIYQTAfQQFDFGYASAIAVVLFLIILVLTLL 289
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 80-450 1.52e-13

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 73.33  E-value: 1.52e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  80 SLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGwILLAAPNSGWLNvWLRQWLGGDSPLNI 159
Cdd:PRK09433  49 SFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFG-LLSVYGRSGWLA-QLLQALGLEWPFSI 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 160 YSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAI--VAGFIL-----SFIQGMT 232
Cdd:PRK09433 127 YGLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLppVAALIFmlcftSFATVLT 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 233 LFGVPAFlltparvpvVTTKLAeFYQMFPPELNL--AAAYCMPLLLMTGGLFFLRRRIlgRRQYVMIGGKARGSRLVGLG 310
Cdd:PRK09433 207 LGGGPKA---------TTIELA-IYQALSFDFDLarAALLALLQMVLCLGLVLLSQRL--SKAIAVGATLLRGWRDPQDS 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 311 RWRWPALLGALLVPAVTVFLPYASLTLVSLSKAWgqgpswdnltlhwyrWAVLDNPQTQSAIVNSLLYATMAATVCLLLG 390
Cdd:PRK09433 275 LWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASL---------------LRVLAQPALWQALWTSLRIALAAALLAVVLT 339

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499233454 391 VVVAYMVERKLFRG----AWALGATASVPIIIPGIVLSVGFF---SAFTQPFYGLYG----TGALLVLAFV 450
Cdd:PRK09433 340 MMLLWSSRELRLRQrklaAQALELSGMLILAMPGIVLATGLFlllRNTTDLPASALGivilTNALMALPYA 410
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 69-284 6.22e-13

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 68.58  E-value: 6.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454   69 TTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSGWLNvwlr 148
Cdd:TIGR01581  15 TDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGP---- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  149 qWLGGDSPLNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFI 228
Cdd:TIGR01581  91 -YLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 499233454  229 QGMTLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFL 284
Cdd:TIGR01581 170 RALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 58-242 2.57e-12

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 67.48  E-value: 2.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  58 QWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGR--GLIRVLVLAAFitPSFIGALGWILL 135
Cdd:COG3833   56 NFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRkaGLLALLLLQMF--PAFLALVALYLL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 136 AApNSGWLNvwlrqwlggdsplniySMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLV 215
Cdd:COG3833  134 LS-ALGLLN----------------TLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLA 196

                        170       180
                 ....*....|....*....|....*..
gi 499233454 216 MPAIVAGFILSFIQGMTLFGVPAFLLT 242
Cdd:COG3833  197 KPILAVVALLSFIGPWNDFILASVLLR 223
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 372-556 4.02e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.38  E-value: 4.02e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 372 IVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALL--VLAF 449
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLpaLILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 450 VTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFL---ITPQTN 526
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLgggEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 499233454 527 VMTTLIYNYKDGGNYEAVCATSNVLLLGTI 556
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 60-249 2.40e-11

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 64.71  E-value: 2.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  60 SLVNYLRIFTtPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAApN 139
Cdd:PRK09497  49 TLDNYTRLLD-PLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLS-T 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 140 SGWLNvWLRQWLGG-DSPLNIYSMWGAVFVCAVYTV-PFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMP 217
Cdd:PRK09497 127 KGYLN-EFLLWLGViDTPIRIMFTESAVIIGLVYILlPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMP 205

                        170       180       190
                 ....*....|....*....|....*....|..
gi 499233454 218 AIVAGFILSFIQGMTLFGVpAFLLTPARVPVV 249
Cdd:PRK09497 206 GIIAGCLLVLLPAMGMFYV-SDLLGGAKNLLI 236
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 58-507 5.29e-10

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 62.20  E-value: 5.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  58 QWSLVNYLRIFTTPNLIEPMLNSLVlagsTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFI--TPSFIGALGWILL 135
Cdd:COG4135   43 GFSLAPWRALFAWPGLGRSILLSLF----TGLAATLLALLLALLILAAFYGTRLFRRLERLLSPLlaVPHAAAAIGLAFL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 136 AAPnSGWLNVWLRQWLGG-DSPLN---IYSMWGA--VFVCAVYTVPFTFTIVATALDEMAV-ELEDASAMLGGGILRTMR 208
Cdd:COG4135  119 IAP-SGWLARLLSPWLTGwDRPPDlllVQDPYGLslILGLVLKEVPFLLLMSLAALPQLNVrRSLAVARSLGYGRATAWL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 209 SVTLPLVMPAIVagfilsfiqgMTLFGVPAFLL------------TPARVPVVTTKLaefyqMFPPELNL---AAAYCMP 273
Cdd:COG4135  198 KVVLPQLYPQIR----------LPVFAVLAYSLsvvdvalilgptTPPTLAVLIWQW-----FNDPDLSLrlqAAAGALL 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 274 LLLMTGGLFFLRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLgALLVPAVTVFLPYASLTLVSLSKAWGQGPSW-DN 352
Cdd:COG4135  263 QLLLVLAALLLWRLLERLVARLGRRWLSSGRRGLGDPALRRLGLA-LMLLIALLSLLGLALLLLWSFAGRWRFPDALpSS 341

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 353 LTL-HWYRWAvldnPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAF 431
Cdd:COG4135  342 WTLrFWQRAA----PGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLL 417

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499233454 432 TqpFYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVF 507
Cdd:COG4135  418 L--RLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGF 491
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 309-575 9.63e-10

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 60.02  E-value: 9.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 309 LGRWRWPALlgALLVPAVTVFLPYASLTLVSLSKAwgqgpswDNLTLHWYRwAVLDNPQTQSAIVNSLLYATMAATVCLL 388
Cdd:PRK15050  22 LRPLLWLLL--PLLVLAPLVVYPLVRVVLQSLTGE-------HGLGLATYR-AVLGSPDFRGALLTTLQIAFASTAGCLV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 389 LGVVVAYMVERKLFRGAWALGATASVPIIIPG--IVLSVGF---------------FSAFTQPFYGLYGTGAlLVLAFVT 451
Cdd:PRK15050  92 LGVLLALVLAFVPFPGASLVGRFIDTFVAFPSflITLAFTFlygsagsvnialqrlFGLEAPPLDFLYSPGG-VILAEIT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 452 TFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTL 531
Cdd:PRK15050 171 FYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVL 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 499233454 532 IYNY-KDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARRRGAA 575
Cdd:PRK15050 251 IYSKaIVDFDYPTACAIAVVNLALSLGLYALYRRVNRRAGGGSRD 295
cysT CHL00187
sulfate transport protein; Provisional
 56-235 1.21e-09

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 58.87  E-value: 1.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  56 TGQWSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILL 135
Cdd:CHL00187  36 ASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATV 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 136 AAPNsGWLNVWLrQWLGGDSPLNIYSMWGA-VFVcavyTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPL 214
Cdd:CHL00187 116 YGDN-GWIGHLL-SHLGIQIVFTKLGVLLAmIFV----SFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPP 189

                        170       180
                 ....*....|....*....|.
gi 499233454 215 VMPAIVAGFILSFIQGMTLFG 235
Cdd:CHL00187 190 LIPALLTGLALTFSRAIGEYG 210
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
316-559 1.39e-09

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 59.38  E-value: 1.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 316 ALLGALLVPAVTVFLPYASLTLVSLSKAWGQgpswdnltlhwyRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAY 395
Cdd:PRK10971  16 SLGTSLLFVCLILLLPLSALVMQLSQMSWAQ------------YWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAW 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 396 MVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAF-TQPFYGLY---------GTGALLVLAFVTTFLPIAYSHGGAII 465
Cdd:PRK10971  84 ILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFsVNGWYGEWlakfdikvtYTWLGIAVAMAFTSIPFVVRTVQPVL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 466 KTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFL---ITPQTNVMTTLIYNYKDGGNYE 542
Cdd:PRK10971 164 EELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIagnIAWKTEVTSLMIFVRLQEFDYP 243

                        250
                 ....*....|....*..
gi 499233454 543 AVCATSNVLLLGTILIV 559
Cdd:PRK10971 244 AASAIASVILAASLLLL 260
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 350-533 1.55e-09

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 59.10  E-value: 1.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 350 WDNLTLHWYRwAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAY-MVERKLFRGAWALGATASVPIIIPGIV------ 422
Cdd:PRK10592  44 WAGWSTRWYG-ELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVvMVRFGRFRGSNGFAFMITAPLVMPDVItglsll 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 423 -LSVGFFSAFTQPFYGLYGTGALLVLAFVTTFLPIAYShggAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVS 501
Cdd:PRK10592 123 lLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS---SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIIS 199

                        170       180       190
                 ....*....|....*....|....*....|..
gi 499233454 502 GWMLVFIPVMRELSVAVFLITPQTNVMTTLIY 533
Cdd:PRK10592 200 GWLLAFTLSLDDLVIASFVSGPGATTLPMLVF 231
modB PRK09421
molybdate ABC transporter permease subunit;
366-572 6.23e-09

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 56.47  E-value: 6.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 366 PQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIV------LSVGFFSAFTQPFYGLY 439
Cdd:PRK09421   5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVtgylllISMGRRGFIGQWLYEWF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 440 G-------TGALL---VLAFVTTFLPIAYShggaiIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIP 509
Cdd:PRK09421  85 GisfafswRGAALaaaVMAFPLMVRAIRLS-----LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFAR 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 510 VMRELSVA---VFLITPQTNVMTTLIYNYKD--GGNYEA--VCATSNVLLLGTiliVMLGRLLTGLARRR 572
Cdd:PRK09421 160 SLGEFGATitfVSNIPGETQTIPSAMYTLIQtpGGESAAarLCIISIAIALAS---LLLSEWLARRSRKR 226
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 60-240 1.39e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 56.55  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  60 SLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPn 139
Cdd:PRK15050  58 GLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGS- 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 140 SGWLNVWLRQWLG-GDSPLN-IYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMP 217
Cdd:PRK15050 137 AGSVNIALQRLFGlEAPPLDfLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216

                        170       180
                 ....*....|....*....|...
gi 499233454 218 AIVAGFILSFIQGMTLFGVPAFL 240
Cdd:PRK15050 217 ALAAGGSLCLLLTLNEFGIVLFT 239
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 42-227 1.62e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 55.76  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  42 PVGIIALNSWRDDLTG-QW---SLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLV 117
Cdd:PRK09500  20 PIIILIVNSFNSSRFGiNWkgfTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGML 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 118 LAAFITPSFIGALGwiLLAapnsgwLNVWLRQWLGgdsplniysMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASA 197
Cdd:PRK09500 100 FVVMMSPDIVMAIS--LLV------LFMLLGIQLG---------FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAK 162

                        170       180       190
                 ....*....|....*....|....*....|
gi 499233454 198 MLGGGILRTMRSVTLPLVMPAIVAGFILSF 227
Cdd:PRK09500 163 DLGASEFTILRKIILPLALPAVAAGWLLSF 192
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 299-526 2.35e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 52.46  E-value: 2.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 299 GKARGSRLVGLGrWRWPALLGALLV---PAVTVFLpyASL----TLVSLSkAWGQGPSWDNltlhwYRWAVLDNPQTQsA 371
Cdd:COG3833    5 KSRKRRRRLKLG-LRHLVLIILAIIalfPILWVVS--ASFnpggSLYSSS-LIPENFTLEN-----YKKLFTETPFLR-W 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 372 IVNSLLYATMAATVCLLLGVVVAYMVERKLFRGAWALGATASVPIIIPGIVLSVGFFSAFTQpfYGLYGTGALLVLAFVT 451
Cdd:COG3833   75 FLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSA--LGLLNTLLGLILVYLG 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499233454 452 TFLPIAYshggAIIK----TISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTN 526
Cdd:COG3833  153 GAIPFNT----WLMKgyfdTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPEN 227
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 87-428 1.52e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 51.07  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454   87 TAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGwILLAAPNSGWLnVWLRQWLGGDSPLNIYSMWGAV 166
Cdd:TIGR01253  59 SALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFG-IIGIYGRQGWL-ATLANLFGLEWQFHIYGLQGIL 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  167 FVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVpafLLTPARV 246
Cdd:TIGR01253 137 IAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFAT---VLSLGGG 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  247 PVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTG--GLFFLRRRIlgrrqyvmigGKARGSRLVGLGRWRWPALLGALLVP 324
Cdd:TIGR01253 214 PQATTIELAIYQAILFDFDLAKAALFALLQFVCclGLFLLSQRF----------SKAIANGLSLLNGWFDPDDKLASKIC 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  325 AVTVFLPYASLTLVSLSKAWGQGPSWDNLTlhwyrwAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKLFRG 404
Cdd:TIGR01253 284 DILLILLALFFLFPPLLAIIIDALNSRNLL------EVLANPQLWQALGTSLRIALAAALLALTLAIALLLLSRELEALH 357

                         330       340
                  ....*....|....*....|....*...
gi 499233454  405 AWALGA----TASVPIIIPGIVLSVGFF 428
Cdd:TIGR01253 358 KMKAGQfiemAGMLILAIPGIVLAMGFF 385
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
69-235 1.88e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 46.67  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  69 TTPNLIEP-MLNSLVLAGSTAVIATAL----GVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSgwl 143
Cdd:PRK11602  53 VLQNLADPdMLHAIWLTVLIALIAVPVnlvfGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNG--- 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 144 nvWLRQWLGGDSPLNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGF 223
Cdd:PRK11602 130 --PLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGV 207

                        170
                 ....*....|..
gi 499233454 224 ILSFIQGMTLFG 235
Cdd:PRK11602 208 VLTNARAIGEFG 219
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 59-293 1.17e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 44.07  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  59 WSLVNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSR-TDMPGRGLIRVLVLAAFITPSFIGALGWILLAa 137
Cdd:PRK10592  47 WSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRfGRFRGSNGFAFMITAPLVMPDVITGLSLLLLF- 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 138 pnsgwlnVWLRQWLGGDSPLNIYSMWGA-VFVCAVYTVpftfTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVM 216
Cdd:PRK10592 126 -------VALAHAIGWPADRGMLTIWLAhVTFCTAYVA----VVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIM 194

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499233454 217 PAIVAGFILSFIQGMTLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYcmpLLLMTGGLFFLRRRILGRRQ 293
Cdd:PRK10592 195 PAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATL---ILGVVGIVGFIAWYLMARAE 268
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 160-288 1.17e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.06  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  160 YSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAF 239
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 499233454  240 LLTPARVpVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRI 288
Cdd:pfam00528 130 LGSWPGL-GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
malF PRK10999
maltose ABC transporter permease MalF;
63-227 1.74e-04

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 44.18  E-value: 1.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  63 NYLRIFTTPNLIEPMLN----SLVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAP 138
Cdd:PRK10999 269 NFTRVFTDEGIQKPFIAifiwTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQ 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 139 NSGWLNVWLRQWLGgdsplnIYSMWgavfvcavYTVPFT----FTIVATALDE-------MAV------ELEDASAMLGG 201
Cdd:PRK10999 349 SFGEINMMLSALFG------IKPAW--------FSDPTLaktmILIVNTWLGYpymmilcMGLlkaipdDLYEASAMDGA 414

                        170       180       190
                 ....*....|....*....|....*....|
gi 499233454 202 GILRTMRSVTLPLV----MPAIVAGFILSF 227
Cdd:PRK10999 415 GPFQNFFKITLPLLikplTPLMIASFAFNF 444
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 353-511 4.63e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 42.37  E-value: 4.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 353 LTLHWYRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERK--------LFRGAWALGATASVPIIIPGIVLS 424
Cdd:PRK09497  46 MVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLphkvrpllLFLLIVPFWTNSLIRIYGLKIFLS 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 425 V-GFFSAF-------TQPFYGLYGTGALlVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILGAGQVGTFGRITLPLMK 496
Cdd:PRK09497 126 TkGYLNEFllwlgviDTPIRIMFTESAV-IIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTM 204

                        170
                 ....*....|....*
gi 499233454 497 PGLVSGWMLVFIPVM 511
Cdd:PRK09497 205 PGIIAGCLLVLLPAM 219
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 387-572 7.70e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 40.75  E-value: 7.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  387 LLLGVVVAYMVERKLFRgawALGATASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALLVLAFVTTFLPIAYSHggAIIK 466
Cdd:pfam00528   2 IPLGIIAALRRGRRLDR---LLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRR--AALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  467 TISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLIT-PQTNVMTTLIYNYKDggnYEAVC 545
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSwPGLGLLLIEAILGYD---YPEIQ 153

                         170       180
                  ....*....|....*....|....*..
gi 499233454  546 ATSNVLLLGTILIVMLGRLLTGLARRR 572
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQRLLDPR 180
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 65-292 9.86e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 42.13  E-value: 9.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454  65 LRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTDMPGR-------GLIRVLVLAafiTPSFIGALGWILLaa 137
Cdd:PRK09433 309 LRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRklaaqalELSGMLILA---MPGIVLATGLFLL-- 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499233454 138 pnsgwlnvwLRQWLGgdspLNIYSMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMP 217
Cdd:PRK09433 384 ---------LRNTTD----LPASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRR 450

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499233454 218 AIVAGFILSFIQGMTLFGVPAFLLTPArvpVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGRR 292
Cdd:PRK09433 451 PLAQAFAFACALSLGDFGVIALFGSQD---FRTLPFLLYQQLGSYRSQDAAVTALLLLLLCLLLFTLIERLPGRH 522
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH