|
Name |
Accession |
Description |
Interval |
E-value |
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
1-433 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 824.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 1 MNWSPKTKAWQELKNTVPYIQKGKIHTVQEQVYISKGPQVKIGDTVMVGENKVLCEVISIEKENNMLLPFNQSDKVAYGD 80
Cdd:PRK06793 1 RLLMNENQKWNTFIETPFYTKVGKVHSVQEQFFVAKGPKAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 81 WVYVTDTKITIPADEYLLGKVLNASGDILNEEAGVAKFkQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKI 160
Cdd:PRK06793 81 SVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPL-QKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 161 GIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAE 240
Cdd:PRK06793 160 GIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 241 HFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIGGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPD 320
Cdd:PRK06793 240 YFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 321 LARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNAAIFT 400
Cdd:PRK06793 320 LARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFE 399
|
410 420 430
....*....|....*....|....*....|...
gi 499261254 401 SKEKSYFIHQFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK06793 400 CKNKVEGINTFLKQGRSDSFQFDDIVEAMHHIV 432
|
|
| FliI_clade2 |
TIGR03497 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
23-433 |
0e+00 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274608 [Multi-domain] Cd Length: 413 Bit Score: 699.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 23 GKIHTVQEQVYISKGPQVKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLG 99
Cdd:TIGR03497 1 GKVTRVIGLTIESKGPKASIGELCSIltkGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 100 KVLNASGDILNEEaGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIAR 179
Cdd:TIGR03497 81 RVLDGLGRPLDGE-GPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 180 NAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRF 259
Cdd:TIGR03497 160 NAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 260 ADARRSVDIAVKDLPIG-GKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELAT 338
Cdd:TIGR03497 240 AMAQREIGLAVGEPPTTrGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 339 KNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSdNAAIFTSKEKSYFIHQFLKQLRDE 418
Cdd:TIGR03497 320 KNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGS-NPKIDEAIRYIEKINSFLKQGIDE 398
|
410
....*....|....*
gi 499261254 419 SVTLEETSKLMETLV 433
Cdd:TIGR03497 399 KFTFEETVQLLKELL 413
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
3-433 |
0e+00 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 595.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 3 WSPKTKAWQELKNTVPYIQKGKIHTVQEQVYISKGPQVKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYG 79
Cdd:COG1157 1 LDRLARLLARLEELPPVRVSGRVTRVVGLLIEAVGPDASIGELCEIetaDGRPVLAEVVGFRGDRVLLMPLGDLEGISPG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 80 DWVYVTDTKITIPADEYLLGKVLNASGDILNEEaGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQK 159
Cdd:COG1157 81 ARVVPTGRPLSVPVGDGLLGRVLDGLGRPLDGK-GPLPGEERRPLDAPPPNPLERARITEPLDTGVRAIDGLLTVGRGQR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 160 IGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIA 239
Cdd:COG1157 160 IGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEDDLGEEGLARSVVVVATSDEPPLMRLRAAYTATAIA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 240 EHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPV 318
Cdd:COG1157 240 EYFRDQGKNVLLLMDSLTRFAMAQREIGLAAGEPPAtRGYPPSVFALLPRLLERAGNGGKGSITAFYTVLVEGDDMNDPI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 319 PDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDnAAI 398
Cdd:COG1157 320 ADAVRGILDGHIVLSRKLAERGHYPAIDVLASISRVMPDIVSPEHRALARRLRRLLARYEENEDLIRIGAYQPGSD-PEL 398
|
410 420 430
....*....|....*....|....*....|....*
gi 499261254 399 FTSKEKSYFIHQFLKQLRDESVTLEETSKLMETLV 433
Cdd:COG1157 399 DEAIALIPAIEAFLRQGMDERVSFEESLAQLAELL 433
|
|
| FliI_clade1 |
TIGR03496 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
23-429 |
5.22e-168 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274607 [Multi-domain] Cd Length: 411 Bit Score: 477.74 E-value: 5.22e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 23 GKIHTVQEQVYISKGPQVKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLG 99
Cdd:TIGR03496 1 GRVTRVVGLVLEAVGLRAPVGSRCEIessDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLGGPLRLPVGDSLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 100 KVLNASGDILnEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIAR 179
Cdd:TIGR03496 81 RVIDGLGRPL-DGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 180 NAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRF 259
Cdd:TIGR03496 160 YTEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 260 ADARRSVDIAVKDLPIggktllMESY-------MKKLLERSGKTQN--GSITGIYTVLVDGDDMNGPVPDLARGILDGHI 330
Cdd:TIGR03496 240 AMAQREIALAIGEPPA------TKGYppsvfakLPQLVERAGNGEEgkGSITAFYTVLVEGDDQQDPIADAARAILDGHI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 331 VLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNA---AIftskEKSYF 407
Cdd:TIGR03496 314 VLSRELAEQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPEldqAI----ALYPR 389
|
410 420
....*....|....*....|..
gi 499261254 408 IHQFLKQLRDESVTLEETSKLM 429
Cdd:TIGR03496 390 IEAFLQQGMRERASFEESLEAL 411
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
90-354 |
9.85e-156 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 440.84 E-value: 9.85e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 90 TIPADEYLLGKVLNASGDILNEEaGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVG 169
Cdd:cd01136 1 SIPVGDGLLGRVIDALGEPLDGK-GLPDEPERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 170 KSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTV 249
Cdd:cd01136 80 KSTLLGMIARNTDADVNVIALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKKV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 250 LLMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDG 328
Cdd:cd01136 160 LLLMDSLTRFAMAQREVGLAAGEPPTrRGYPPSVFALLPRLLERAGNGEKGSITAFYTVLVEGDDFNDPIADEVRSILDG 239
|
250 260
....*....|....*....|....*.
gi 499261254 329 HIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:cd01136 240 HIVLSRRLAERGHYPAIDVLASISRV 265
|
|
| fliI_yscN |
TIGR01026 |
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP ... |
15-432 |
7.82e-154 |
|
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273401 [Multi-domain] Cd Length: 440 Bit Score: 442.97 E-value: 7.82e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 15 NTVPYIqkGKIHTVQEQVYISKGPQVKIGDTVMV----GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKIT 90
Cdd:TIGR01026 19 RLVKRV--GRVTKVKGLLIEAVGPQASVGDLCLIerrgSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILNEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:TIGR01026 97 IKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 STLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVL 250
Cdd:TIGR01026 177 STLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 251 LMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGH 329
Cdd:TIGR01026 257 LLMDSVTRFAMAQREIGLAAGEPPAtKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGH 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 330 IVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNAAIFTSKEKSYFIh 409
Cdd:TIGR01026 337 IVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDFAIAKYPKLE- 415
|
410 420
....*....|....*....|...
gi 499261254 410 QFLKQLRDESVTLEETSKLMETL 432
Cdd:TIGR01026 416 RFLKQGINEKVNFEESLQQLEEI 438
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
10-433 |
1.88e-148 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 429.14 E-value: 1.88e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 10 WQELKNTVP----YIQKGKIHTVQEQVYISKGPQVKIGDTVMV-----GENKVLCEVISIEKENNMLLPFNQSDKVAYGD 80
Cdd:PRK07721 3 TQQLIDCIEtldpYKRYGKVSRVIGLMIESKGPESSIGDVCYIhtkggGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGC 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 81 WVYVTDTKITIPADEYLLGKVLNASGDILNEEAgVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKI 160
Cdd:PRK07721 83 LVEATGKPLEVKVGSGLIGQVLDALGEPLDGSA-LPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 161 GIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAE 240
Cdd:PRK07721 162 GIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 241 HFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVP 319
Cdd:PRK07721 242 YFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTtKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 320 DLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSdnaaif 399
Cdd:PRK07721 322 DTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGS------ 395
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 499261254 400 tSKEKSYFIH------QFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK07721 396 -SREIDEAIQfypqiiSFLKQGTDEKATFEESIQALLSLF 434
|
|
| III_secr_ATP |
TIGR02546 |
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and ... |
18-433 |
4.62e-148 |
|
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274191 [Multi-domain] Cd Length: 422 Bit Score: 427.50 E-value: 4.62e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 18 PYIQKGKIHTVQEQVYISKGPQVKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPAD 94
Cdd:TIGR02546 2 PVRVRGRVTEVSGTLLKAVLPGARVGELCLIrrrDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 95 EYLLGKVLNASGDIL-NEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTL 173
Cdd:TIGR02546 82 EALLGRVLDGFGRPLdGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 174 LGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMM 253
Cdd:TIGR02546 162 LGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMM 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 254 DSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVL 332
Cdd:TIGR02546 242 DSLTRFARALREIGLAAGEPPArGGYPPSVFSSLPRLLERAGNGEKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 333 TRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNAAIFTSKEKSYfIHQFL 412
Cdd:TIGR02546 322 SRALAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDA-IRAFL 400
|
410 420
....*....|....*....|.
gi 499261254 413 KQLRDESVTLEETSKLMETLV 433
Cdd:TIGR02546 401 RQSTDEYSPYEETLEQLHALV 421
|
|
| FliI_clade3 |
TIGR03498 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
23-425 |
3.29e-143 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Pssm-ID: 163293 [Multi-domain] Cd Length: 418 Bit Score: 414.78 E-value: 3.29e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 23 GKIHTVQEQVYISKGPQ--VKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYL 97
Cdd:TIGR03498 1 GRVTAVTGLLIEVRGLSraVRLGDRCAIrarDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 98 LGKVLNASGDILNEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMI 177
Cdd:TIGR03498 81 LGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSML 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 178 ARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVT 257
Cdd:TIGR03498 161 ARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 258 RFADARRSVDIAVKDLPIG-GKTLLMESYMKKLLERSGK--TQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTR 334
Cdd:TIGR03498 241 RFAMAQREIGLAAGEPPVArGYTPSVFSELPRLLERAGPgaEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 335 ELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNA---AIftskEKSYFIHQF 411
Cdd:TIGR03498 321 AIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPEldeAI----RLVPKIYEF 396
|
410
....*....|....
gi 499261254 412 LKQLRDESVTLEET 425
Cdd:TIGR03498 397 LTQGPDEPTSLQDP 410
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
38-433 |
5.51e-127 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 374.54 E-value: 5.51e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 38 PQVKIGDTVMVGENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILNEEAGVAK 117
Cdd:PRK06820 46 PGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPLTG 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 118 fkQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGRE 197
Cdd:PRK06820 126 --QWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGRE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 198 VKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIGG 277
Cdd:PRK06820 204 VREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAG 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 278 ktllmeSY-------MKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGS 350
Cdd:PRK06820 284 ------SFppsvfanLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAAS 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 351 VSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNAAIFTSKEKSYfIHQFLKQLRDESVTLEETSKLME 430
Cdd:PRK06820 358 VSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPA-ICAFLQQDHSETAHLETTLEHLA 436
|
...
gi 499261254 431 TLV 433
Cdd:PRK06820 437 QVV 439
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
37-425 |
1.07e-124 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 368.54 E-value: 1.07e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 37 GPQ--VKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILNE 111
Cdd:PRK08927 33 GPIhaLSVGARIVVetrGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 112 EAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLV 191
Cdd:PRK08927 113 KGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 192 GERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVK 271
Cdd:PRK08927 193 GERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAG 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 272 DLPIG-GKTLLMESYMKKLLERS--GKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVL 348
Cdd:PRK08927 273 EPPTTkGYTPTVFAELPRLLERAgpGPIGEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 349 GSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSD---NAAIFTSKEksyfIHQFLKQLRDESVTLEET 425
Cdd:PRK08927 353 KSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSDpevDEAIRLNPA----LEAFLRQGKDEATSLAEG 428
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
1-433 |
1.40e-124 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 368.31 E-value: 1.40e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 1 MNWSPKTKAWQELKNTVPYIQ-KGKIHTVQEQVYISKGPQVKIGDTVMV---GEN-KVLCEVISIEKENNMLLPFNQSDK 75
Cdd:PRK06936 2 LSLDYIPHHLRHAIVGSRLIQiRGRVTQVTGTILKAVVPGVRIGELCYLrnpDNSlSLQAEVIGFAQHQALLTPLGEMYG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 76 VAYGDWVYVTDTKITIPADEYLLGKVLNASGDILnEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIG 155
Cdd:PRK06936 82 ISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPF-DGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 156 IGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLA 235
Cdd:PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 236 TSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDM 314
Cdd:PRK06936 241 TSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTrRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDM 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 315 NGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSD 394
Cdd:PRK06936 321 TEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQD 400
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 499261254 395 ---NAAIftskEKSYFIHQFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK06936 401 keaDQAI----ERIGAIRGFLRQGTHELSHFNETLNLLETLT 438
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
23-433 |
2.66e-121 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 359.77 E-value: 2.66e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 23 GKIHTVQEQVYISKGPQVKIGDTVMV----GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLL 98
Cdd:PRK08472 20 GSITKISPTIIEADGLNPSVGDIVKIessdNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 99 GKVLNASGDILnEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIA 178
Cdd:PRK08472 100 GRVVDPLGRPI-DGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIV 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 179 RNAKADINVIGLVGERGREVKDFLRKDLGEEgLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTR 258
Cdd:PRK08472 179 KGCLAPIKVVALIGERGREIPEFIEKNLGGD-LENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTR 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 259 FADARRSVDIAV------KDLPIGGKTLLmesymKKLLERSGKTQN-GSITGIYTVLVDGDDMNGPVPDLARGILDGHIV 331
Cdd:PRK08472 258 FAMAQREIGLALgepptsKGYPPSVLSLL-----PQLMERAGKEEGkGSITAFFTVLVEGDDMSDPIADQSRSILDGHIV 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 332 LTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSD---NAAIftskEKSYFI 408
Cdd:PRK08472 333 LSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDkelDEAI----SKKEFM 408
|
410 420
....*....|....*....|....*
gi 499261254 409 HQFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK08472 409 EQFLKQNPNELFPFEQTFEQLEEIL 433
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
37-433 |
4.03e-119 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 354.39 E-value: 4.03e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 37 GPQVKIgDTvMVGEnkVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILnEEAGVA 116
Cdd:PRK08972 47 GSLCSI-ET-MAGE--LEAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPL-DGLGPI 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 117 KFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGR 196
Cdd:PRK08972 122 YTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 197 EVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLP-I 275
Cdd:PRK08972 202 EVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPaT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 276 GGKTLLMESYMKKLLERSGK--TQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSR 353
Cdd:PRK08972 282 KGYPPSVFAKLPALVERAGNggPGQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISR 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 354 VMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNA--AIFTSKEKsyfIHQFLKQLRDESVTLEETSKLMET 431
Cdd:PRK08972 362 VMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRidNAIRLQPA---MNAFLQQTMKEAVPYDMSVNMLKQ 438
|
..
gi 499261254 432 LV 433
Cdd:PRK08972 439 LA 440
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
37-433 |
1.83e-114 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 342.87 E-value: 1.83e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 37 GPQVKIGDTVMV------GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILN 110
Cdd:PRK05688 43 GLRAAVGSRCLVinddsyHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALD 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 111 EEAGVaKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGL 190
Cdd:PRK05688 123 GKGPM-KAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 191 VGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAV 270
Cdd:PRK05688 202 IGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAI 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 271 KDLP-IGGKTLLMESYMKKLLERSGKTQ--NGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDV 347
Cdd:PRK05688 282 GEPPaTKGYPPSVFAKLPKLVERAGNAEpgGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDI 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 348 LGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSD---NAAIftskEKSYFIHQFLKQLRDESVTLEE 424
Cdd:PRK05688 362 EASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDpetDLAI----ARFPHLVQFLRQGLRENVSLAQ 437
|
....*....
gi 499261254 425 TSKLMETLV 433
Cdd:PRK05688 438 SREQLAAIF 446
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
144-352 |
6.07e-111 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 325.08 E-value: 6.07e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 144 GIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDE 223
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASADVVVYALIGERGREVREFIEELLGSGALKRTVVVVATSDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 224 SHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKT--QNGS 300
Cdd:pfam00006 81 PPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGrEGYPPSVFSLLARLLERAGRVkgKGGS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499261254 301 ITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVS 352
Cdd:pfam00006 161 ITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
16-433 |
3.09e-107 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 324.03 E-value: 3.09e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 16 TVPYIQK-GKIHTVQEQVYISKGPQVKIGD--TVMVGENKVL--CEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKIT 90
Cdd:PRK09099 18 ALPAVRRtGKVVEVIGTLLRVSGLDVTLGElcELRQRDGTLLqrAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILNEEAGVAkFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:PRK09099 98 VPVGPALLGRVIDGLGEPIDGGGPLD-CDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 STLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVL 250
Cdd:PRK09099 177 STLMGMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 251 LMMDSVTRFADARRSVDIAVKDLPI-GGKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGH 329
Cdd:PRK09099 257 LMMDSLTRFARAQREIGLAAGEPPArRGFPPSVFAELPRLLERAGMGETGSITALYTVLAEDESGSDPIAEEVRGILDGH 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 330 IVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNAAIfTSKEKSYFIH 409
Cdd:PRK09099 337 MILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVAD-EAIAKIDAIR 415
|
410 420
....*....|....*....|....
gi 499261254 410 QFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK09099 416 DFLSQRTDEYSDPDATLAALAELS 439
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
40-379 |
1.11e-106 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 322.72 E-value: 1.11e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 40 VKIGDTVMV--GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLlGKVLNASGDILNEEAGVAK 117
Cdd:PRK06002 47 VRLGDFVAIraDGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKGPLRIRPDPSWK-GRVINALGEPIDGLGPLAP 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 118 FKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGRE 197
Cdd:PRK06002 126 GTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGRE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 198 VKDFLRKDLGEEgLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIG- 276
Cdd:PRK06002 206 VREFLEDTLADN-LKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVAr 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 277 GKTLLMESYMKKLLERSG--KTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:PRK06002 285 GYPPSVFSELPRLLERAGpgAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRL 364
|
330 340
....*....|....*....|....*
gi 499261254 355 MEEIVPESQWKTASKIREWMSIYQE 379
Cdd:PRK06002 365 ARHAWTPEQRKLVSRLKSMIARFEE 389
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
38-433 |
1.20e-105 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 319.63 E-value: 1.20e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 38 PQVKIGDTVMV----GENKVLCE--VISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDI--- 108
Cdd:PRK08149 23 PDVAIGEICEIragwHSNEVIARaqVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIver 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 109 LNEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVI 188
Cdd:PRK08149 103 FDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVI 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 189 GLVGERGREVKDFLrkdlgeEGLRKS------VIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADA 262
Cdd:PRK08149 183 GLIGERGREVTEFV------ESLRASsrrekcVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 263 RRSVDIAVKDLPI--GGKTLLMESyMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKN 340
Cdd:PRK08149 257 LRDVALAAGELPArrGYPASVFDS-LPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKG 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 341 HYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIE--QTSDNAAIFTSKEKsyfIHQFLKQLRDE 418
Cdd:PRK08149 336 HYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRrgENADNDRAMDKRPA---LEAFLKQDVAE 412
|
410
....*....|....*
gi 499261254 419 SVTLEETSKLMETLV 433
Cdd:PRK08149 413 KSSFSDTLERLNEFA 427
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
19-432 |
5.05e-101 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 308.04 E-value: 5.05e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 19 YIQKGKIHTVQEQVYISKGPQVKIGDTVMVGENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLL 98
Cdd:PRK07594 19 YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 99 GKVLNASGDILNE-EAGVAKFKQkmpLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMI 177
Cdd:PRK07594 99 GRVIDGFGRPLDGrELPDVCWKD---YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 178 ARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVT 257
Cdd:PRK07594 176 CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 258 RFADARRSVDIAVKDLPIGGK-TLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTREL 336
Cdd:PRK07594 256 RYARAAREIALAAGETAVSGEyPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 337 ATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIeQTSDNAAIFTSKEKSYFIHQFLKQLR 416
Cdd:PRK07594 336 AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEY-QRGVDTDTDKAIDTYPDICTFLRQSK 414
|
410
....*....|....*..
gi 499261254 417 DESVTLEE-TSKLMETL 432
Cdd:PRK07594 415 DEVCGPELlIEKLHQIL 431
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
3-433 |
9.69e-101 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 307.87 E-value: 9.69e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 3 WSPKTKAWQELKNTVPYIQK-GKIHTVQEQVYISKGPQVKIGDTVMVGEN------KVLCEVISIEKENNMLLPFNQSDK 75
Cdd:PRK07960 8 WLTTLDNFEAKMAQLPAVRRyGRLTRATGLVLEATGLQLPLGATCVIERQngsethEVESEVVGFNGQRLFLMPLEEVEG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 76 VAYGDWVYVTDTKIT-------IPADEYLLGKVLNASGDILN----EEAGvakfkQKMPLEAPPIHAFSRAEITDTLETG 144
Cdd:PRK07960 88 ILPGARVYARNISGEglqsgkqLPLGPALLGRVLDGSGKPLDglpaPDTG-----ETGALITPPFNPLQRTPIEHVLDTG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 145 IKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDES 224
Cdd:PRK07960 163 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 225 HLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLP-IGGKTLLMESYMKKLLERSGK--TQNGSI 301
Cdd:PRK07960 243 PLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPaTKGYPPSVFAKLPALVERAGNgiSGGGSI 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 302 TGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENE 381
Cdd:PRK07960 323 TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNR 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 499261254 382 LYFKLGTIEQTSD---NAAIFTSKEksyfIHQFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK07960 403 DLVSVGAYAKGSDpmlDKAIALWPQ----LEAFLQQGIFERADWEDSLQALERIF 453
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
9-414 |
4.35e-98 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 300.27 E-value: 4.35e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 9 AWQELKNTVPYIQKGKIHTVQEQVYISKGPQVKIGDTVMV---GENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVT 85
Cdd:PRK07196 5 ALKSIENIHLARVAGRLVRVTGLLLESVGCRLAIGQRCRIesvDETFIEAQVVGFDRDITYLMPFKHPGGVLGGARVFPS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 86 DTKITIPADEYLLGKVLNASGDILNeeaGVAKFKQKMPLEA--PPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIF 163
Cdd:PRK07196 85 EQDGELLIGDSWLGRVINGLGEPLD---GKGQLGGSTPLQQqlPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLM 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 164 AGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFR 243
Cdd:PRK07196 162 AGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYR 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 244 DQGKTVLLMMDSVTRFADARRSVDIAVKDLP-IGGKTLLMESYMKKLLERSGKTQN-GSITGIYTVLVDGDDMNGPVPDL 321
Cdd:PRK07196 242 DKGHDVLLLVDSLTRYAMAQREIALSLGEPPaTKGYPPSAFSIIPRLAESAGNSSGnGTMTAIYTVLAEGDDQQDPIVDC 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 322 ARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDNAAIfTS 401
Cdd:PRK07196 322 ARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMAD-QA 400
|
410
....*....|...
gi 499261254 402 KEKSYFIHQFLKQ 414
Cdd:PRK07196 401 VHYYPAITQFLRQ 413
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
91-354 |
4.83e-80 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 248.14 E-value: 4.83e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILnEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:cd19476 2 VPVGPELLGRILDGLGEPL-DGLPPIKTKQRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 STLLGMIARN---AKADINVIGLVGERGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGK 247
Cdd:cd19476 81 TVLAMQLARNqakAHAGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 248 TVLLMMDSVTRFADARRSVDIAVKDLPIG-GKTLLMESYMKKLLERSGKTQN--GSITGIYTVLVDGDDMNGPVPDLARG 324
Cdd:cd19476 161 HVLLIIDDISRYAEALREMSALLGEPPGReGYPPYLFTKLATLYERAGKVKDggGSITAIPAVSTPGDDLTDPIPDNTFA 240
|
250 260 270
....*....|....*....|....*....|
gi 499261254 325 ILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:cd19476 241 ILDGQIVLSRELARKGIYPAINVLDSTSRV 270
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
10-433 |
4.70e-64 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 212.46 E-value: 4.70e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 10 WQelkntvPYIQKGKIHTVQEQVYISKGPQVKIGDTVMVGENK---VLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTD 86
Cdd:PRK05922 14 WQ------PYRECGLLSRVSGNLLEAQGLSACLGELCQISLSKsppILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 87 TKITIPADEYLLGKVLNASGDILNEEAGVAKFKQKmPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGS 166
Cdd:PRK05922 88 RPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLK-PLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 167 GVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDlgEEGLR--KSVIVAATSDESHLMQLRAAKLATSIAEHFRD 244
Cdd:PRK05922 167 GSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQH--KEGLAaqRTIIIASPAHETAPTKVIAGRAAMTIAEYFRD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 245 QGKTVLLMMDSVTRFADARRSVDIAVkdlpigGKTLLMESY-------MKKLLERSGKTQNGSITGIYTVLVDGddmNGP 317
Cdd:PRK05922 245 QGHRVLFIMDSLSRWIAALQEVALAR------GETLSAHHYaasvfhhVSEFTERAGNNDKGSITALYAILHYP---NHP 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 318 --VPDLARGILDGHIVLT---RELATknhyPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTI--- 389
Cdd:PRK05922 316 diFTDYLKSLLDGHFFLTpqgKALAS----PPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYvpg 391
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 499261254 390 --EQTSDNAAIFTSkeksyfIHQFLKQLRDESVTLEETSKLMETLV 433
Cdd:PRK05922 392 qdAHLDRAVKLLPS------IKQFLSQPLSSYCALHNTLKQLEALL 431
|
|
| atpD |
TIGR01039 |
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ... |
73-414 |
2.36e-44 |
|
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 211621 [Multi-domain] Cd Length: 461 Bit Score: 160.65 E-value: 2.36e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 73 SDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILNEEAGVAKfKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGML 152
Cdd:TIGR01039 60 TDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPA-KERWPIHRKAPSFEEQSTKVEILETGIKVIDLLA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 153 TIGIGQKIGIFAGSGVGKSTLLGMIARN-AKA--DINVIGLVGERGREVKDFLRkDLGEEG-LRKSVIVAATSDESHLMQ 228
Cdd:TIGR01039 139 PYAKGGKIGLFGGAGVGKTVLIQELINNiAKEhgGYSVFAGVGERTREGNDLYH-EMKESGvIDKTALVYGQMNEPPGAR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 229 LRAAKLATSIAEHFRD-QGKTVLLMMDSVTRFADARRSVDIAVKDLP--IGGKTLLMESyMKKLLERSGKTQNGSITGIY 305
Cdd:TIGR01039 218 MRVALTGLTMAEYFRDeQGQDVLLFIDNIFRFTQAGSEVSALLGRMPsaVGYQPTLATE-MGELQERITSTKTGSITSVQ 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 306 TVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVME-EIVPESQWKTASKIREWMSIYQE-NELY 383
Cdd:TIGR01039 297 AVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDpSVVGEEHYDVARGVQQILQRYKElQDII 376
|
330 340 350
....*....|....*....|....*....|.
gi 499261254 384 FKLGtIEQTSDNAAIFTSKEKSyfIHQFLKQ 414
Cdd:TIGR01039 377 AILG-MDELSEEDKLTVERARR--IQRFLSQ 404
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
91-355 |
1.07e-43 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 154.30 E-value: 1.07e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILNEEAGVAkFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:cd01135 4 LPVSEDMLGRIFNGSGKPIDGGPPIL-PEDYLDINGPPINPVARIYPEEMIQTGISAIDVMNTLVRGQKLPIFSGSGLPH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 STLLGMIARNAK------ADINVIGLVGERGREVKdFLRKDLGEEG-LRKSVIVAATSDESHLMQLRAAKLATSIAEHFR 243
Cdd:cd01135 83 NELAAQIARQAGvvgseeNFAIVFAAMGVTMEEAR-FFKDDFEETGaLERVVLFLNLANDPTIERIITPRMALTTAEYLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 244 -DQGKTVLLMMDSVTRFADARRSVDIAVKDLPiG--GKTLLMESYMKKLLERSGKTQ--NGSITGIYTVLVDGDDMNGPV 318
Cdd:cd01135 162 yEKGKHVLVILTDMTNYAEALREVSAAREEVP-GrrGYPGYMYTDLATIYERAGRVEgrKGSITQIPILTMPNDDITHPI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 499261254 319 PDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVM 355
Cdd:cd01135 241 PDLTGYITEGQIYLDRDLHNKGIYPPIDVLPSLSRLM 277
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
90-357 |
8.46e-42 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 148.91 E-value: 8.46e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 90 TIPADEYLLGKVLNASGDILNEEAGVAKfKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVG 169
Cdd:cd01133 1 SVPVGEETLGRIFNVLGEPIDERGPIKA-KERWPIHREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 170 KSTLL-GMIARNAKAD--INVIGLVGERGREVKDFLR--KDLG---EEGLRKSVIVAATSDESHLMQLRAAKLATSIAEH 241
Cdd:cd01133 80 KTVLImELINNIAKAHggYSVFAGVGERTREGNDLYHemKESGvinLDGLSKVALVYGQMNEPPGARARVALTGLTMAEY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 242 FRDQ-GKTVLLMMDSVTRFADARRSVDIAVKDLPIGG---KTLLMEsyMKKLLERSGKTQNGSITGIYTVLVDGDDMNGP 317
Cdd:cd01133 160 FRDEeGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVgyqPTLATE--MGSLQERITSTKKGSITSVQAVYVPADDLTDP 237
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 499261254 318 VPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEE 357
Cdd:cd01133 238 APATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRILDP 277
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
50-379 |
1.26e-38 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 145.57 E-value: 1.26e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 50 ENKVLCEVISIEKENNM-LLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILNEEAGVAKFkqkmplEAPP 128
Cdd:CHL00060 54 EINVTCEVQQLLGNNRVrAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTR------TTSP 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 129 IH----AFSRAEIT-DTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKsTLLGM--IARNAKAD--INVIGLVGERGREVK 199
Cdd:CHL00060 128 IHrsapAFIQLDTKlSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGK-TVLIMelINNIAKAHggVSVFGGVGERTREGN 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 200 DfLRKDLGEEGlrksVIVAATSDESHL------M------QLRAAKLATSIAEHFRDQGKT-VLLMMDSVTRFADARRSV 266
Cdd:CHL00060 207 D-LYMEMKESG----VINEQNIAESKValvygqMneppgaRMRVGLTALTMAEYFRDVNKQdVLLFIDNIFRFVQAGSEV 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 267 DIAVKDLP--IGGK-TLLMEsyMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYP 343
Cdd:CHL00060 282 SALLGRMPsaVGYQpTLSTE--MGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYP 359
|
330 340 350
....*....|....*....|....*....|....*..
gi 499261254 344 AIDVLGSVSRVME-EIVPESQWKTASKIREWMSIYQE 379
Cdd:CHL00060 360 AVDPLDSTSTMLQpRIVGEEHYETAQRVKQTLQRYKE 396
|
|
| AtpD |
COG0055 |
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP ... |
84-379 |
8.71e-38 |
|
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP synthase, beta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439825 [Multi-domain] Cd Length: 468 Bit Score: 142.92 E-value: 8.71e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 84 VTDT--KITIPADEYLLGKVLNASGDILNEEAGVAKfKQKMPL--EAPPIHAFS-RAEItdtLETGIKAIDGMLTIGIGQ 158
Cdd:COG0055 72 VIDTgaPISVPVGEATLGRIFNVLGEPIDGKGPIEA-KERRPIhrPAPPFEEQStKTEI---LETGIKVIDLLAPYAKGG 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 159 KIGIFAGSGVGKSTLL-GMIARNAKAD--INVIGLVGERGREVKDFLRkDLGEEG-LRKSVIVAATSDESHLMQLRAAKL 234
Cdd:COG0055 148 KIGLFGGAGVGKTVLImELIHNIAKEHggVSVFAGVGERTREGNDLYR-EMKESGvLDKTALVFGQMNEPPGARLRVALT 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 235 ATSIAEHFRD-QGKTVLLMMDSVTRFADARRSVdiavkdlpiggKTLL--MES---Y-------MKKLLERSGKTQNGSI 301
Cdd:COG0055 227 ALTMAEYFRDeEGQDVLLFIDNIFRFTQAGSEV-----------SALLgrMPSavgYqptlateMGALQERITSTKKGSI 295
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499261254 302 TGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVME-EIVPESQWKTASKIREWMSIYQE 379
Cdd:COG0055 296 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRILDpLIVGEEHYRVAREVQRILQRYKE 374
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
81-425 |
1.64e-35 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 136.49 E-value: 1.64e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 81 WVYVTDTKITIPADEYLLGKVLNASG-------DILNEEagvakfkqKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLT 153
Cdd:PRK04196 68 KVRFTGEPLKLPVSEDMLGRIFDGLGrpidggpEIIPEK--------RLDINGAPINPVAREYPEEFIQTGISAIDGLNT 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 154 IGIGQKIGIFAGSGVGKSTLLGMIARNAK---ADIN---VIGLVGERGREVkDFLRKDLGEEG-LRKSVIVAATSDESHL 226
Cdd:PRK04196 140 LVRGQKLPIFSGSGLPHNELAAQIARQAKvlgEEENfavVFAAMGITFEEA-NFFMEDFEETGaLERSVVFLNLADDPAI 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 227 MQLRAAKLATSIAEHFR-DQGKTVLLMMDSVTRFADARRSVDIAVKDLPiG--GKTLLMESYMKKLLERSG--KTQNGSI 301
Cdd:PRK04196 219 ERILTPRMALTAAEYLAfEKGMHVLVILTDMTNYCEALREISAAREEVP-GrrGYPGYMYTDLATIYERAGriKGKKGSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 302 TGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESqwKTASKIREWMsiyqeNE 381
Cdd:PRK04196 298 TQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEG--KTREDHKDVA-----NQ 370
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 499261254 382 LYFKLGTIEQTSDNAAI-----FTSKEKSY------FIHQFLKQLRDESVTLEET 425
Cdd:PRK04196 371 LYAAYARGKDLRELAAIvgeeaLSERDRKYlkfadaFEREFVNQGFDENRSIEET 425
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
71-354 |
5.20e-31 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 124.26 E-value: 5.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 71 NQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILNEEAGVAkFKQKMPLE--APPIHAfsRAEITDTLETGIKAI 148
Cdd:PRK13343 77 DDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQ-ATARRPLErpAPAIIE--RDFVTEPLQTGIKVV 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 149 DGMLTIGIGQKIGIFAGSGVGKSTllgmIARNA---KADINVIG---LVGER---GREVKDFLRkdlgEEG-LRKSVIVA 218
Cdd:PRK13343 154 DALIPIGRGQRELIIGDRQTGKTA----IAIDAiinQKDSDVICvyvAIGQKasaVARVIETLR----EHGaLEYTTVVV 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 219 ATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVdiavkdlpiggkTLLM------ESY------- 285
Cdd:PRK13343 226 AEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYREL------------SLLLrrppgrEAYpgdifyl 293
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499261254 286 MKKLLERSGKTQ----NGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:PRK13343 294 HSRLLERAAKLSpelgGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRV 366
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
91-354 |
4.91e-30 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 117.27 E-value: 4.91e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILNEEaGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:cd01132 4 VPVGEALLGRVVDALGNPIDGK-GPIQTKERRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQTGK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 STLL--GMIARNAKADINVIGLVGERGREVKDfLRKDLGEEG-LRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGK 247
Cdd:cd01132 83 TAIAidTIINQKGKKVYCIYVAIGQKRSTVAQ-IVKTLEEHGaMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNGK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 248 TVLLMMDSVTRFADARRSVDIAVKDLPigGKtllmESY-------MKKLLERSGKTQN----GSITGIYTVLVDGDDMNG 316
Cdd:cd01132 162 HALIIYDDLSKQAVAYRQMSLLLRRPP--GR----EAYpgdvfylHSRLLERAAKLSDelggGSLTALPIIETQAGDVSA 235
|
250 260 270
....*....|....*....|....*....|....*...
gi 499261254 317 PVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:cd01132 236 YIPTNVISITDGQIFLESELFNKGIRPAINVGLSVSRV 273
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
91-361 |
2.56e-27 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 113.28 E-value: 2.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILNEEAGVAKfKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:TIGR01040 76 TPVSEDMLGRVFNGSGKPIDKGPPVLA-EDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPH 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 STLLGMIARNAkadinviGLVGERGREVKD---------------------FLRKDLGEEG-LRKSVIVAATSDESHLMQ 228
Cdd:TIGR01040 155 NEIAAQICRQA-------GLVKLPTKDVHDghednfaivfaamgvnmetarFFKQDFEENGsMERVCLFLNLANDPTIER 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 229 LRAAKLATSIAEHFRDQ-GKTVLLMMDSVTRFADARRSVDIAVKDLPiG--GKTLLMESYMKKLLERSGKTQ--NGSITG 303
Cdd:TIGR01040 228 IITPRLALTTAEYLAYQcEKHVLVILTDMSSYADALREVSAAREEVP-GrrGFPGYMYTDLATIYERAGRVEgrNGSITQ 306
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 499261254 304 IYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPE 361
Cdd:TIGR01040 307 IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE 364
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
141-353 |
9.50e-23 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 97.26 E-value: 9.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 141 LETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLR-----KD--LGEEGLRK 213
Cdd:cd01134 60 LLTGQRVLDTLFPVAKGGTAAIPGPFGCGKTVISQSLSKWSNSDVVIYVGCGERGNEMAEVLEefpelKDpiTGESLMER 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 214 SVIVAATSDeshlMQL--RAAKLAT--SIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLP--------IGGKtlL 281
Cdd:cd01134 140 TVLIANTSN----MPVaaREASIYTgiTIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPaeegypayLGAR--L 213
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499261254 282 MESYmkkllERSGKTQ-------NGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSR 353
Cdd:cd01134 214 AEFY-----ERAGRVRclgspgrEGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSK 287
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
128-401 |
1.39e-20 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 92.84 E-value: 1.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 128 PIHAFSRAE-ITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIAR---NAKADINVIG-LVGERGREVKDFL 202
Cdd:PRK12608 103 PLHPRERLRlETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAavaANHPEVHLMVlLIDERPEEVTDMR 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 203 RKDLGEeglrksvIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSvdiavkDLPIGGKTL-- 280
Cdd:PRK12608 183 RSVKGE-------VYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNN------EVESSGRTLsg 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 281 -LMESYM---KKLLERSGKTQN-GSITGIYTVLVD-GDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:PRK12608 250 gVDARALqrpKRLFGAARNIEEgGSLTIIATALVDtGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRR 329
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 499261254 355 MEEIVPESQWKTASKIREWMSIYQENE-LYFKLGTIEQTSDNAAIFTS 401
Cdd:PRK12608 330 EELLLDSKELEKVRRLRRALASRKPVEaMEALLEKLRETPDNAEFLNS 377
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
54-353 |
4.97e-20 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 91.63 E-value: 4.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 54 LCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILneEAGVAKFKQKMPLEAPPIHAFS 133
Cdd:PRK02118 39 LAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPI--DGGPELEGEPIEIGGPSVNPVK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 134 RAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKdFLRKDLGEEG-LR 212
Cdd:PRK02118 117 RIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQAEADIIILGGMGLTFDDYL-FFKDTFENAGaLD 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 213 KSVIVAATSDESHLMQLRAAKLATSIAEHFR-DQGKTVLLMMDSVTRFADARRSVDIAVKDLPigGKTLLMESYMKKLLE 291
Cdd:PRK02118 196 RTVMFIHTASDPPVECLLVPDMALAVAEKFAlEGKKKVLVLLTDMTNFADALKEISITMDQIP--SNRGYPGSLYSDLAS 273
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499261254 292 RSGKT----QNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLtrelatknHYPAIDVLGSVSR 353
Cdd:PRK02118 274 RYEKAvdfeDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYL--------RRGRIDPFGSLSR 331
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
146-381 |
2.22e-19 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 86.88 E-value: 2.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 146 KAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIAR----NAKADINVIGLVGERGREVKDFLRKDLGEeglrksvIVAATS 221
Cdd:cd01128 5 RVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANaiakNHPEVELIVLLIDERPEEVTDMRRSVKGE-------VVASTF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 222 DESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDiavkdlPIGGKTL---LMESYMKKLLERSGKTQN 298
Cdd:cd01128 78 DEPPERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVV------PSSGKTLsggVDANALHKPKRFFGAARN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 299 ----GSITGIYTVLVD-GDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREW 373
Cdd:cd01128 152 ieegGSLTIIATALVDtGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRI 231
|
....*...
gi 499261254 374 MSIYQENE 381
Cdd:cd01128 232 LSPMDPIE 239
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
91-354 |
2.55e-19 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 90.02 E-value: 2.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 91 IPADEYLLGKVLNASGDILNEEAGVAKfKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK 170
Cdd:CHL00059 76 IPVSEAYLGRVVNALAKPIDGKGEISA-SESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGK 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 171 S-----TLLgmiarNAKADiNVIGL---VGERGREVKDfLRKDLGEEG-LRKSVIVAATSDESHLMQLRAAKLATSIAEH 241
Cdd:CHL00059 155 TavatdTIL-----NQKGQ-NVICVyvaIGQKASSVAQ-VVTTLQERGaMEYTIVVAETADSPATLQYLAPYTGAALAEY 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 242 FRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPigGKtllmESY-------MKKLLERSGKTQN----GSITGIYTVLVD 310
Cdd:CHL00059 228 FMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPP--GR----EAYpgdvfylHSRLLERAAKLSSqlgeGSMTALPIVETQ 301
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 499261254 311 GDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:CHL00059 302 AGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRV 345
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
79-354 |
7.79e-19 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 88.58 E-value: 7.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 79 GDWVYVTDTKITIPADEYLLGKVLNA-------SGDILNEEagvakfkqKMPLE--APPIhaFSRAEITDTLETGIKAID 149
Cdd:PRK09281 85 GDTVKRTGRILEVPVGEALLGRVVNPlgqpidgKGPIEATE--------TRPVErkAPGV--IDRKSVHEPLQTGIKAID 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 150 GMLTIGIGQKIGIFAGSGVGKSTllgmIA----RNAKaDINVIGL---VGERGREVKDFLRKdLGEEG-LRKSVIVAATS 221
Cdd:PRK09281 155 AMIPIGRGQRELIIGDRQTGKTA----IAidtiINQK-GKDVICIyvaIGQKASTVAQVVRK-LEEHGaMEYTIVVAATA 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 222 DESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVdiavkdlpiggkTLLM------ESY-------MKK 288
Cdd:PRK09281 229 SDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQL------------SLLLrrppgrEAYpgdvfylHSR 296
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499261254 289 LLERSGKT----QNGSITG---IYTvlvDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRV 354
Cdd:PRK09281 297 LLERAAKLsdelGGGSLTAlpiIET---QAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRV 366
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
38-382 |
8.67e-19 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 88.69 E-value: 8.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 38 PQVKIGDTVMVGEnkVLCEVisieKENNM-----LLPFNQSDKVAY----GDwvYVTDTKITIPADEYLLGKVLnasgdi 108
Cdd:PRK04192 122 PTVKVGDKVEAGD--ILGTV----QETPSiehkiMVPPGVSGTVKEivseGD--YTVDDTIAVLEDEDGEGVEL------ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 109 lneeagvaKFKQKMPLEAPpIHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVI 188
Cdd:PRK04192 188 --------TMMQKWPVRRP-RPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWADADIVIY 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 189 GLVGERGREVKDFLR-----KDL--GEEGLRKSVIVAATSDeshlMQLrAAK-----LATSIAEHFRDQGKTVLLMMDSV 256
Cdd:PRK04192 259 VGCGERGNEMTEVLEefpelIDPktGRPLMERTVLIANTSN----MPV-AAReasiyTGITIAEYYRDMGYDVLLMADST 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 257 TRFADARRsvDIAVK------------DLPiggkTLLMESYmkkllERSGKTQN-----GSITGIYTVLVDGDDMNGPVP 319
Cdd:PRK04192 334 SRWAEALR--EISGRleempgeegypaYLA----SRLAEFY-----ERAGRVKTlggeeGSVTIIGAVSPPGGDFSEPVT 402
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499261254 320 D--LArgildghIV-----LTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTA---SKIREW-MSIYQ-ENEL 382
Cdd:PRK04192 403 QntLR-------IVkvfwaLDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDpdwRELRDEaMDLLQrEAEL 470
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
115-401 |
4.24e-18 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 85.89 E-value: 4.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 115 VAKFKQKMPLEA-PPIHAFSRAEI-TDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIA----RNAKADINVI 188
Cdd:TIGR00767 124 PEKAKNRVLFENlTPLYPNERLRLeTSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAqaitRNHPEVELIV 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 189 GLVGERGREVKDFLRKDLGEeglrksvIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVdi 268
Cdd:TIGR00767 204 LLIDERPEEVTDMQRSVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV-- 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 269 avkdLPIGGKTL---LMESYMKKLLERSGKTQN----GSITGIYTVLVD-GDDMNGPVPDLARGILDGHIVLTRELATKN 340
Cdd:TIGR00767 275 ----TPASGKVLsggVDANALHRPKRFFGAARNieegGSLTIIATALIDtGSRMDEVIFEEFKGTGNMELHLDRKLADRR 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499261254 341 HYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENE-LYFKLGTIEQTSDNAAIFTS 401
Cdd:TIGR00767 351 IFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEaMEFLISKLKKTKTNEEFLES 412
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
57-431 |
1.71e-16 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 81.56 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 57 VISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGDILNEEAGVAKFKQKMPLEAPPI----HAF 132
Cdd:PRK07165 39 VISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFnlahGLM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 133 SRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTL-LGMIARNAKADINVIGL-VGERGREVKdFLRKDLGEEG 210
Cdd:PRK07165 119 TVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIaLNTIINQKNTNVKCIYVaIGQKRENLS-RIYETLKEHD 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 211 LRKSVIVAATSDESHLMQLRAAKLATSIAE---HFRDqgktVLLMMDSVTRFADARRSVDIAVkDLPIGGKTllMESYM- 286
Cdd:PRK07165 198 ALKNTIIIDAPSTSPYEQYLAPYVAMAHAEnisYNDD----VLIVFDDLTKHANIYREIALLT-NKPVGKEA--FPGDMf 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 287 ---KKLLERSGKTQNG-SITGIYTV-LVDGDdMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPE 361
Cdd:PRK07165 271 fahSKLLERAGKFKNRkTITALPILqTVDND-ITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 362 SQWKTASKIREWMSIYQENE---------------LYFKLGTIEQtsdnaaIFTSKEKSYFIHQF------------LKQ 414
Cdd:PRK07165 350 TITKVAGEISKIYRAYKRQLklsmldydlnketsdLLFKGKMIEK------MFNQKGFSLYSYRFvlliskliswglLKD 423
|
410
....*....|....*..
gi 499261254 415 LRDESVTLEETSKLMET 431
Cdd:PRK07165 424 VKDEQKALDFIDYLIEN 440
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
57-409 |
2.99e-16 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 80.85 E-value: 2.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 57 VISIEKENNM-LLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVLNASGD------------ILNEEAGVAKFKQKMP 123
Cdd:PTZ00185 82 VFNLEKDGRIgIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHevpvglltrsraLLESEQTLGKVDAGAP 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 124 leappiHAFSRAEITDTLETGIKAIDGMLTIGIGQKIGIFAGSGVGK-----STLLGMIARNAK-----ADINVIGLVGE 193
Cdd:PTZ00185 162 ------NIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKtsiavSTIINQVRINQQilsknAVISIYVSIGQ 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 194 RGREVKDFLRKDLGEEGLRKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDL 273
Cdd:PTZ00185 236 RCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRP 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 274 P----IGGKTLLMESymkKLLERSGKTQ----NGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTRELATKNHYPAI 345
Cdd:PTZ00185 316 PgreaYPGDVFYLHS---RLLERAAMLSpgkgGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAV 392
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 346 DVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQT------SDNAAIFTSKEKSYFIH 409
Cdd:PTZ00185 393 NIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKLAADSVGGSQVQTvpmirgARFVALFNQKNPSFFMN 462
|
|
| T3SS_ATPase_C |
pfam18269 |
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family ... |
359-425 |
1.97e-13 |
|
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family of ATPases that form part of the Type III secretion system (T3SS) present in Escherichia coli. T3SS is a macromolecular complex that creates a syringe-like apparatus extending from the bacterial cytosol across three membranes to the eukaryotic cytosol. This process is essential for pathogenicity. EscN is a functionally unique ATPase that provides an inner-membrane recognition gate for the T3SS chaperone-virulence effector complexes as well as a potential source of energy for their subsequent secretion.The C-terminal domain of T3SS ATPases mediates binding with multiple contact points along the chaperone.
Pssm-ID: 465691 [Multi-domain] Cd Length: 70 Bit Score: 64.76 E-value: 1.97e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499261254 359 VPESQWKTASKIREWMSIYQENELYFKLGTIEQTSDnAAIFTSKEKSYFIHQFLKQLRDESVTLEET 425
Cdd:pfam18269 1 VSPEHLQAARRLRELLATYQENEDLIRIGAYQAGSD-PEIDEAIAKRPAINAFLRQGVDEPVSFEET 66
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
177-358 |
9.47e-13 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 70.44 E-value: 9.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 177 IARNAKADINVIGLVGERGREVKDFLRK-------DLGEEGLRKSVIVAATSDEShlMQLRAAKLAT--SIAEHFRDQGK 247
Cdd:PRK14698 676 LAKWSDAQVVIYIGCGERGNEMTDVLEEfpklkdpKTGKPLMERTVLIANTSNMP--VAAREASIYTgiTIAEYFRDMGY 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 248 TVLLMMDSVTRFADARRSVDIAVKDLP-IGGKTLLMESYMKKLLERSGKT-------QNGSITGIYTVLVDGDDMNGPVP 319
Cdd:PRK14698 754 DVALMADSTSRWAEALREISGRLEEMPgEEGYPAYLASKLAEFYERAGRVvtlgsdyRVGSVSVIGAVSPPGGDFSEPVV 833
|
170 180 190
....*....|....*....|....*....|....*....
gi 499261254 320 DLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEI 358
Cdd:PRK14698 834 QNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAV 872
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
148-401 |
1.86e-11 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 65.55 E-value: 1.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 148 IDGMLTIGIGQKIGIFAGSGVGKSTLLGMIA----RNAKaDINVIG-LVGERGREVKDFLRKDLGEeglrksvIVAATSD 222
Cdd:PRK09376 160 IDLIAPIGKGQRGLIVAPPKAGKTVLLQNIAnsitTNHP-EVHLIVlLIDERPEEVTDMQRSVKGE-------VVASTFD 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 223 ESHLMQLRAAKL----ATSIAEHfrdqGKTVLLMMDSVTRFADARRSVdiavkdLPIGGKTL--------LmesYM-KKL 289
Cdd:PRK09376 232 EPAERHVQVAEMviekAKRLVEH----GKDVVILLDSITRLARAYNTV------VPSSGKVLsggvdanaL---HRpKRF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 290 LersGKTQN----GSITGIYTVLVD-GDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQW 364
Cdd:PRK09376 299 F---GAARNieegGSLTIIATALIDtGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEEL 375
|
250 260 270
....*....|....*....|....*....|....*...
gi 499261254 365 KTASKIREWMSIYQENE-LYFKLGTIEQTSDNAAIFTS 401
Cdd:PRK09376 376 QKVWILRKILSPMDEVEaMEFLLDKLKKTKTNEEFFDS 413
|
|
| ATP-synt_flagellum-secretory_path_III_C |
cd18114 |
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the ... |
363-432 |
2.33e-07 |
|
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The flagellum-specific ATPase FliI is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of FoF1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349749 [Multi-domain] Cd Length: 71 Bit Score: 47.60 E-value: 2.33e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499261254 363 QWKTASKIREWMSIYQENELYFKLGTIEQTSD---NAAIftskEKSYFIHQFLKQLRDESVTLEETSKLMETL 432
Cdd:cd18114 1 HYLAARKFRELMSTYQENEDLIRIGAYKKGSDpevDEAI----RLKPQIEAFLKQGLNEKAPLEESLQQLEEI 69
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
157-336 |
6.27e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.91 E-value: 6.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 157 GQKIGIFAGSGVGKSTLLGMIARNAKAD-INVIGLVGERGREVKDFLRKDLGEEGlrksvivaatsDESHLMQLRAAKLA 235
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPgGGVIYIDGEDILEEVLDQLLLIIVGG-----------KKASGSGELRLRLA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 236 TSIAEhfrdQGKTVLLMMDSVTRFADARRSVdiavkdlpiggktLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMn 315
Cdd:smart00382 71 LALAR----KLKPDVLILDEITSLLDAEQEA-------------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPA- 132
|
170 180
....*....|....*....|.
gi 499261254 316 gpvpdLARGILDGHIVLTREL 336
Cdd:smart00382 133 -----LLRRRFDRRIVLLLIL 148
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
152-204 |
1.54e-04 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 42.30 E-value: 1.54e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 499261254 152 LTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRK 204
Cdd:cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
152-217 |
7.04e-04 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 41.73 E-value: 7.04e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499261254 152 LTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIGLvgeRGREVKDFlrkdlGEEGLRKSVIV 217
Cdd:PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL---NGQPIADY-----SEAALRQAISV 418
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
152-184 |
1.65e-03 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 38.78 E-value: 1.65e-03
10 20 30
....*....|....*....|....*....|...
gi 499261254 152 LTIGIGQKIGIFAGSGVGKSTLLGMIARNAKAD 184
Cdd:pfam00005 6 LTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT 38
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
121-284 |
1.93e-03 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 40.35 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 121 KMPLEAPPIHAFSRAEITDTLETGIKAIDGM-LTIGIGQKIGIFAGSGVGKSTLLGMIARNAKADINVIgLVGerGREVK 199
Cdd:TIGR02857 311 KAPVTAAPASSLEFSGVSVAYPGRRPALRPVsFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVN--GVPLA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 200 DFLRKDLGEEglrksviVAATSDESHLMqlrAAKLATSIAehFRDQGKTVLLMMDSVTRfADArrsvDIAVKDLPIGGKT 279
Cdd:TIGR02857 388 DADADSWRDQ-------IAWVPQHPFLF---AGTIAENIR--LARPDASDAEIREALER-AGL----DEFVAALPQGLDT 450
|
....*
gi 499261254 280 LLMES 284
Cdd:TIGR02857 451 PIGEG 455
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
148-262 |
2.48e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 40.27 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 148 IDGMLTIGIGQKIGIFAGSGVGKSTLLGMIArNAKADIN------VIgLVGERGREVKDFLRKDLGEeglrksvIVAATS 221
Cdd:PRK12678 407 IDLIMPIGKGQRGLIVSPPKAGKTTILQNIA-NAITTNNpechlmVV-LVDERPEEVTDMQRSVKGE-------VIASTF 477
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 499261254 222 D---ESHLMqlrAAKLATSIAEHFRDQGKTVLLMMDSVTRFADA 262
Cdd:PRK12678 478 DrppSDHTT---VAELAIERAKRLVELGKDVVVLLDSITRLGRA 518
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
152-178 |
6.95e-03 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 37.81 E-value: 6.95e-03
10 20
....*....|....*....|....*..
gi 499261254 152 LTIGIGQKIGIFAGSGVGKSTLLGMIA 178
Cdd:COG3840 20 LTIAAGERVAILGPSGAGKSTLLNLIA 46
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
157-275 |
8.55e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 36.17 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499261254 157 GQKIGIFAG-SGVGKSTLLGMIARNA-KADINVIGLVGERGREVKDFLRKDLGEEGLRKSvivaATSDESHLMQLraakl 234
Cdd:pfam13401 4 GAGILVLTGeSGTGKTTLLRRLLEQLpEVRDSVVFVDLPSGTSPKDLLRALLRALGLPLS----GRLSKEELLAA----- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 499261254 235 atsIAEHFRDQGKTVLLMMD-----SVTRFADARRSVDIAVKDLPI 275
Cdd:pfam13401 75 ---LQQLLLALAVAVVLIIDeaqhlSLEALEELRDLLNLSSKLLQL 117
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
146-178 |
9.59e-03 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 37.41 E-value: 9.59e-03
10 20 30
....*....|....*....|....*....|...
gi 499261254 146 KAIDgmLTIGIGQKIGIFAGSGVGKSTLLGMIA 178
Cdd:COG4181 29 KGIS--LEVEAGESVAIVGASGSGKSTLLGLLA 59
|
|
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