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Conserved domains on  [gi|499270985|ref|WP_010968378|]
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Flp family type IVb pilin [Sinorhizobium meliloti]

Protein Classification

Flp family type IVb pilin( domain architecture ID 10008072)

Flp/Fap (fibril-associated protein) family type IVb pilin similar to Aggregatibacter actinomycetemcomitans Flp-1, which is required for non-specific adherence of the bacterium

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 1-54 2.58e-18

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 443057  Cd Length: 58  Bit Score: 69.81  E-value: 2.58e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 499270985  1 MKTIFARLMKDESGATAIEYGLIAALISVALIGGAQTLGGALSTQFTNLGGYLN 54
Cdd:COG3847   1 MKKLLKRFLKDESGATAIEYGLIAALIAVAIIAAVTTLGTALNGLFTSIATALT 54
 
Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 1-54 2.58e-18

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443057  Cd Length: 58  Bit Score: 69.81  E-value: 2.58e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 499270985  1 MKTIFARLMKDESGATAIEYGLIAALISVALIGGAQTLGGALSTQFTNLGGYLN 54
Cdd:COG3847   1 MKKLLKRFLKDESGATAIEYGLIAALIAVAIIAAVTTLGTALNGLFTSIATALT 54
Flp_Fap pfam04964
Flp/Fap pilin component;
8-50 3.60e-13

Flp/Fap pilin component;


Pssm-ID: 398567  Cd Length: 46  Bit Score: 56.84  E-value: 3.60e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 499270985   8 LMKDESGATAIEYGLIAALISVALIGGAQTLGGALSTQFTNLG 50
Cdd:pfam04964  1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTAFTSIA 43
 
Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 1-54 2.58e-18

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443057  Cd Length: 58  Bit Score: 69.81  E-value: 2.58e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 499270985  1 MKTIFARLMKDESGATAIEYGLIAALISVALIGGAQTLGGALSTQFTNLGGYLN 54
Cdd:COG3847   1 MKKLLKRFLKDESGATAIEYGLIAALIAVAIIAAVTTLGTALNGLFTSIATALT 54
Flp_Fap pfam04964
Flp/Fap pilin component;
8-50 3.60e-13

Flp/Fap pilin component;


Pssm-ID: 398567  Cd Length: 46  Bit Score: 56.84  E-value: 3.60e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 499270985   8 LMKDESGATAIEYGLIAALISVALIGGAQTLGGALSTQFTNLG 50
Cdd:pfam04964  1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTAFTSIA 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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