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Conserved domains on  [gi|499271751|ref|WP_010969144|]
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NADH-quinone oxidoreductase subunit C [Sinorhizobium meliloti]

Protein Classification

complex I 30 kDa subunit family protein( domain architecture ID 10012648)

complex I 30 kDa subunit family protein, such as bacterial NADH-quinone oxidoreductase subunit C (NuoC) and eukaryotic NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, which are part of the core domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone/ubiquinone with the translocation of protons across the membrane

CATH:  3.30.460.80
EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0045271
PubMed:  26807915|33957129|32058886|31935361

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 2-198 1.19e-115

NADH dehydrogenase subunit C; Provisional


:

Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 326.86  E-value: 1.19e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   2 SEALNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDVCGVDYPQRPDRFDVVYHLLSP 81
Cdd:PRK06074   1 SEKLEELVAKLLEKLPDAIGKVTVAFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  82 RQNQRVRVKVATGENDPVPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNE 161
Cdd:PRK06074  81 KHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDE 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 499271751 162 AKRVVYEPVElkqefrnfdfLSPWEGTEYVLPGDEKA 198
Cdd:PRK06074 161 QKRVVYEPVT----------LSPWEGTPYVLPGDEKA 187
 
Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 2-198 1.19e-115

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 326.86  E-value: 1.19e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   2 SEALNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDVCGVDYPQRPDRFDVVYHLLSP 81
Cdd:PRK06074   1 SEKLEELVAKLLEKLPDAIGKVTVAFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  82 RQNQRVRVKVATGENDPVPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNE 161
Cdd:PRK06074  81 KHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDE 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 499271751 162 AKRVVYEPVElkqefrnfdfLSPWEGTEYVLPGDEKA 198
Cdd:PRK06074 161 QKRVVYEPVT----------LSPWEGTPYVLPGDEKA 187
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 1-165 2.55e-84

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 246.67  E-value: 2.55e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   1 MSEaLNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDvqCGFVSFIDVCGVDYPQRPDRFDVVYHLLS 80
Cdd:COG0852    1 MSE-LEELLEALEEKFGDAVLEVEEARGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPERGDRFEVVYHLLS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  81 PRQNQRVRVKVATGENDP-VPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYD 159
Cdd:COG0852   78 LTHNRRLRLKVFVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYD 157


                 ....*.
gi 499271751 160 NEAKRV 165
Cdd:COG0852  158 EELKRL 163
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 30-152 8.35e-67

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 200.54  E-value: 8.35e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   30 LTVTAKAENLIALLTFLRDDvQCGFVSFIDVCGVDYPQRpDRFDVVYHLLSPRQNQRVRVKVATGENDPVPSATSVFPGA 109
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDP-ALGFELLTDVSGVDYPKE-KRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTA 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 499271751  110 DWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTG 152
Cdd:TIGR01961  79 NWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
32-154 4.10e-65

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 196.16  E-value: 4.10e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   32 VTAKAENLIALLTFLRDDvQCGFVSFIDVCGVDYPqRPDRFDVVYHLLSPRQNQRVRVKVATGENDPVPSATSVFPGADW 111
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYP-EEGRFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 499271751  112 FEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFV 154
Cdd:pfam00329  79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
 
Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 2-198 1.19e-115

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 326.86  E-value: 1.19e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   2 SEALNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDVCGVDYPQRPDRFDVVYHLLSP 81
Cdd:PRK06074   1 SEKLEELVAKLLEKLPDAIGKVTVAFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  82 RQNQRVRVKVATGENDPVPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYDNE 161
Cdd:PRK06074  81 KHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDE 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 499271751 162 AKRVVYEPVElkqefrnfdfLSPWEGTEYVLPGDEKA 198
Cdd:PRK06074 161 QKRVVYEPVT----------LSPWEGTPYVLPGDEKA 187
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 1-165 2.55e-84

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 246.67  E-value: 2.55e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   1 MSEaLNELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDvqCGFVSFIDVCGVDYPQRPDRFDVVYHLLS 80
Cdd:COG0852    1 MSE-LEELLEALEEKFGDAVLEVEEARGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPERGDRFEVVYHLLS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  81 PRQNQRVRVKVATGENDP-VPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVRYD 159
Cdd:COG0852   78 LTHNRRLRLKVFVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYD 157


                 ....*.
gi 499271751 160 NEAKRV 165
Cdd:COG0852  158 EELKRL 163
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 30-152 8.35e-67

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 200.54  E-value: 8.35e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   30 LTVTAKAENLIALLTFLRDDvQCGFVSFIDVCGVDYPQRpDRFDVVYHLLSPRQNQRVRVKVATGENDPVPSATSVFPGA 109
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDP-ALGFELLTDVSGVDYPKE-KRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTA 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 499271751  110 DWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTG 152
Cdd:TIGR01961  79 NWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
32-154 4.10e-65

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 196.16  E-value: 4.10e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   32 VTAKAENLIALLTFLRDDvQCGFVSFIDVCGVDYPqRPDRFDVVYHLLSPRQNQRVRVKVATGENDPVPSATSVFPGADW 111
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYP-EEGRFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 499271751  112 FEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFV 154
Cdd:pfam00329  79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 28-149 1.48e-39

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 141.98  E-value: 1.48e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  28 GELTVTAKAENLIALLTFLRDdVQCGFVSFIDVCGVDYPQRPDR-------FDVVYHLLSPRQNQRVRVKVATGENDP-V 99
Cdd:PRK11742  22 GIPVVWVKREQLLEVLRFLRK-LPKPYVMLFDLHGIDERLRTHReglpaadFTVFYHLISIERNRDIMLKVALSENDLhV 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 499271751 100 PSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFP 149
Cdd:PRK11742 101 PTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYP 150
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 7-158 4.23e-39

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 133.96  E-value: 4.23e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   7 ELASYLREARGAL---IADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDVCGVDYP-QRPDRFDVVYHLLSPR 82
Cdd:PRK07785  65 EVADRLEEALPEFadaIERVVVDRGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPhDTGRELHAVYHLTSIT 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499271751  83 QNQRVRVKVATGENDP-VPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGfVEVRY 158
Cdd:PRK07785 145 HNRRIRLEVAVPDADPhIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGG-IPVEY 220
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
20-152 1.89e-32

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 117.47  E-value: 1.89e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  20 IADAEVKYGELTVTAKAENLIALLTFLRddvQCGFVSFIDVCGVDYPQRPDRFDVVYHLLSPRQNQRVRVKVATGENDPV 99
Cdd:PRK08491  49 ILESYIELDQAVIWIKKDDNFKVLKILK---HLGYECLSEMSAIDFLAKKGGFEVFYQLLSMSKRKRVRVKCFLKEKEAL 125

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 499271751 100 PSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTG 152
Cdd:PRK08491 126 QSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKG 178
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
7-149 9.27e-32

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 121.04  E-value: 9.27e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751   7 ELASYLREARGALIADAEVKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIDVCGVDYPQRPDR-----FDVVYHLLSP 81
Cdd:PRK13292 223 GLAGELEGAFGDDVRLDEGATDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDRekfpdFTVNYHLLSF 302

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499271751  82 RQNQRVRVKVATGENDP-VPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFP 149
Cdd:PRK13292 303 DTPGHVRIKTELRGRTPeLPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHP 371
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
31-148 6.61e-25

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 100.44  E-value: 6.61e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  31 TVTAKAENLIALLTFLRDDVQCGFVSFIDVCGVDYPqrpDRFDVVYHLLSPRQNQRVRVKVATGENDP-VPSATSVFPGA 109
Cdd:PRK07735 308 TLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFV---THMEVYVHLYSYGKRQSVAVKVKLDREAPqVESVTPLWKGA 384

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 499271751 110 DWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDF 148
Cdd:PRK07735 385 NWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
35-156 1.39e-23

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 91.94  E-value: 1.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  35 KAENLIALLTFLRDD------VQCGF--------VSFidvcgvdypqrpdrfdvvYHLL----SPRQNQRVRVKVATGEN 96
Cdd:PRK12494  46 EPDFLLPIATALYAYgfnylqCQGGYdegpgkelVSF------------------YHLIkvsdNADKPREVRLKVFLPRD 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499271751  97 DP-VPSATSVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEV 156
Cdd:PRK12494 108 DPrVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYEL 168
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
25-171 3.67e-23

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 96.17  E-value: 3.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  25 VKYGELTVTAKAENLIALLTFLRDDVQCGFVSFIdvcGVDYPQRPDRFDVVYHLLSPRQNQRVRVKVATGENDPV-PSAT 103
Cdd:COG3262   21 VRPNEVWVEVDREDLPELAEFLAEGGGGRLAALW---GNDERELGGGFAVYYVFALEGEGALVTLKVSVPKDDPVfPSIT 97

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751 104 SVFPGADWFEREAYDMYGILFTGHPDLRRILTDYGF-EG-YPLRKDFPLTGFVEVRYDNEAKRVVYEPVE 171
Cdd:COG3262   98 DLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGiYPLRKDFKGGPRPAPAPAEEYFRPVEGEGI 167
ndhJ CHL00012
NADH dehydrogenase subunit J
 60-157 1.44e-16

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 73.19  E-value: 1.44e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499271751  60 VCGVDYPQRPDRFDV--------VYHLLSPR----QNQRVRVKVATGENDP-VPSATSVFPGADWFEREAYDMYGILFTG 126
Cdd:CHL00012  45 VYGYNYLRSQCAYDVapggllasVYHLTRIQygvdQPEEVCIKVFVPRKNPrIPSVFWVWKSADFQERESYDMLGISYDN 124

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499271751 127 HPDLRRILTDYGFEGYPLRKDFPLTGFVEVR 157
Cdd:CHL00012 125 HPRLKRILMPESWIGWPLRKDYIAPNFYEIQ 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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