|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
29-334 |
3.50e-82 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 251.95 E-value: 3.50e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 29 RELSVILAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKMEGN 108
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 109 IYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPISGLqNDLFRSLVAGRLFGVvPAQVIW 188
Cdd:COG1172 97 ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGL-PDAFRALGQGSLLGI-PVPVLI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 189 MVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVI 268
Cdd:COG1172 175 ALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAI 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499272609 269 AAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIIDIWVRRQR 334
Cdd:COG1172 255 AAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
64-327 |
1.26e-67 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 212.65 E-value: 1.26e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 64 ISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTL 143
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 144 GMLSIYSGATLVLSKGMPISGLQNDLFRSLVAGRLFGVvPAQVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVG 223
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGI-PVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 224 INTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTV 303
Cdd:cd06579 160 INVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLN 239
|
250 260
....*....|....*....|....
gi 499272609 304 LLGVDSYYEPVAHGTVILLAVIID 327
Cdd:cd06579 240 LLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
34-327 |
2.54e-57 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 188.00 E-value: 2.54e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 34 ILAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALaIKMEGNIYGAA 113
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 114 LVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPIS-GLQN--DLFRSLVAGRLFGVvPAQVIWMV 190
Cdd:PRK09512 101 PAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtGFTDnaDLFGWFGIGRPLGI-PTPVWIMA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 191 AAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAA 270
Cdd:PRK09512 180 IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAA 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 499272609 271 VIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIID 327
Cdd:PRK09512 260 VVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-333 |
7.38e-34 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 127.96 E-value: 7.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 27 NSRELSVILAALAMFVALSLSTD-TFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKM 105
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGgILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 106 EGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTL-GMLsIYSGATLVLSKGMPISGLQNDlFRSLVAGRLFGVVP- 183
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLaGML-VFRGLTLVVLGGQSIGPFPDG-FQKISSGFLPDLFGg 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 184 ---------------AQVIWM----------------------------VAAGIFGTYLLLF------------------ 202
Cdd:NF040906 159 tglhlltlllgvlaaAALVWSqlrgrrrrikyglevepmalfiaklvliAAAILFFTYLLASyrglpnvliilgvlilvy 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 203 ------TRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVIIGGT 276
Cdd:NF040906 239 sfvtnrTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGA 318
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 499272609 277 GLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIIDIWVRRQ 333
Cdd:NF040906 319 SASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
56-324 |
4.43e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 90.78 E-value: 4.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 56 NLLNLLRQISVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKL 134
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 135 RIPSFITTLGMLSIYSGATL----VLSKGMPISGLQNDLFRSLVAGRLFGVVPAQVIWMVAAgIFGTYLLLFTRFGYNVF 210
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALflvtGILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLV-LALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 211 ATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDP-QTGNGLELSVIAAVIIggtglfGGQGSVLGTL 289
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVL------GGAGSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 499272609 290 VGALIIGMISN-GTVLLGVDSYYEPVAHGTVILLAV 324
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
29-334 |
3.50e-82 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 251.95 E-value: 3.50e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 29 RELSVILAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKMEGN 108
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 109 IYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPISGLqNDLFRSLVAGRLFGVvPAQVIW 188
Cdd:COG1172 97 ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGL-PDAFRALGQGSLLGI-PVPVLI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 189 MVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVI 268
Cdd:COG1172 175 ALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAI 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499272609 269 AAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIIDIWVRRQR 334
Cdd:COG1172 255 AAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
64-327 |
1.26e-67 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 212.65 E-value: 1.26e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 64 ISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTL 143
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 144 GMLSIYSGATLVLSKGMPISGLQNDLFRSLVAGRLFGVvPAQVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVG 223
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGI-PVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 224 INTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTV 303
Cdd:cd06579 160 INVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLN 239
|
250 260
....*....|....*....|....
gi 499272609 304 LLGVDSYYEPVAHGTVILLAVIID 327
Cdd:cd06579 240 LLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
34-327 |
2.54e-57 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 188.00 E-value: 2.54e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 34 ILAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALaIKMEGNIYGAA 113
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 114 LVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPIS-GLQN--DLFRSLVAGRLFGVvPAQVIWMV 190
Cdd:PRK09512 101 PAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtGFTDnaDLFGWFGIGRPLGI-PTPVWIMA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 191 AAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAA 270
Cdd:PRK09512 180 IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAA 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 499272609 271 VIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIID 327
Cdd:PRK09512 260 VVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
9-334 |
6.50e-55 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 183.78 E-value: 6.50e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 9 AASTPQAALGRKLVAAAANSRELSVILAALAMFVALSLSTD-TFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSV 87
Cdd:COG4214 3 TTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 88 GALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPISGLQN 167
Cdd:COG4214 83 GSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 168 DLFR----------------------------------------------SLVAGRLFGV----------------VPAQ 185
Cdd:COG4214 163 TFQAigngflpdilgtlswvlgavavaayvalqlrsrrrrrryglpveplWLFVLKLALLavlilgavyllnsyrgIPIV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 186 VIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLEL 265
Cdd:COG4214 243 VLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFEL 322
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499272609 266 SVIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIIDIWVRRQR 334
Cdd:COG4214 323 DAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-334 |
8.57e-46 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 158.69 E-value: 8.57e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 1 MSEANVTMAASTPQAALGRKLVAAAANSRELSVILAALamFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFIS 80
Cdd:PRK11285 2 SSVSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVL--FIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 81 GEIDLSVGALLGLLAMICaALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGM 160
Cdd:PRK11285 80 GDFDLSVASVVAFAGVVT-AVVINATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 161 PIsGLQNDLFRSLVAGRLFGvVPAQVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIM 240
Cdd:PRK11285 159 AV-GISDERFFALGYANFFG-VPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 241 VGVTSFILVGWFRGVDPQTGNGLELSVIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVI 320
Cdd:PRK11285 237 SALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLIL 316
|
330
....*....|....
gi 499272609 321 LLAVIIDIWVRRQR 334
Cdd:PRK11285 317 LAAVLFDRYKQRAK 330
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
32-327 |
1.18e-38 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 139.14 E-value: 1.18e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 32 SVILAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKMEGNIYG 111
Cdd:PRK09699 14 TFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 112 AALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPISGLQNDlFRSLVAGRLFGVvPAQVIWMVA 191
Cdd:PRK09699 94 ALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFD-FVNFFAASVIGI-PVPVIFSLI 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 192 AGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAV 271
Cdd:PRK09699 172 VALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASA 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 499272609 272 IIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIID 327
Cdd:PRK09699 252 IIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
27-327 |
7.49e-36 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 132.55 E-value: 7.49e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 27 NSRELSVILAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMIcAALAIKME 106
Cdd:PRK15432 7 NNRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVL-VGMLLNAG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 107 GNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSKGMPISGLQNDLfRSLVAGRLFGVVPAQV 186
Cdd:PRK15432 86 YSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAEL-KQLSAPILLGISPIGW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 187 IWMVAAgIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELS 266
Cdd:PRK15432 165 LTLILI-LAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMK 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499272609 267 VIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIID 327
Cdd:PRK15432 244 AIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-333 |
7.38e-34 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 127.96 E-value: 7.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 27 NSRELSVILAALAMFVALSLSTD-TFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKM 105
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGgILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 106 EGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTL-GMLsIYSGATLVLSKGMPISGLQNDlFRSLVAGRLFGVVP- 183
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLaGML-VFRGLTLVVLGGQSIGPFPDG-FQKISSGFLPDLFGg 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 184 ---------------AQVIWM----------------------------VAAGIFGTYLLLF------------------ 202
Cdd:NF040906 159 tglhlltlllgvlaaAALVWSqlrgrrrrikyglevepmalfiaklvliAAAILFFTYLLASyrglpnvliilgvlilvy 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 203 ------TRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVIIGGT 276
Cdd:NF040906 239 sfvtnrTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGA 318
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 499272609 277 GLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIIDIWVRRQ 333
Cdd:NF040906 319 SASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
35-328 |
7.09e-32 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 121.72 E-value: 7.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 35 LAALAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKM--------- 105
Cdd:PRK09478 20 VVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMdnankvfpe 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 106 --EGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSK---GMPISGLQNDlFRSLVAGRL-F 179
Cdd:PRK09478 100 laTMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSG-FSTFAQGFVaL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 180 GV--VPAQVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDP 257
Cdd:PRK09478 179 GSfrLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATN 258
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499272609 258 QTGNGLELSVIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNGTVLLGVDSYYEPVAHGTVILLAVIIDI 328
Cdd:PRK09478 259 NLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
38-298 |
4.43e-26 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 105.42 E-value: 4.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 38 LAMFVALSLSTDTFFTELNLLNLLRQISVIGILAVGSTFIFISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVV 117
Cdd:PRK11618 16 VLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAFPLVL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 118 ALGAILSGINGVITTKLRIPSFITTL-GMLSIYSGATLVLSKGMPISglqNDLFRSLVAGRLF----GVVPAQVIWMVAA 192
Cdd:PRK11618 96 VMGAAFGAFMGALIHYLKLPAFIVTLaGMFLARGVSFLVSEESIPIN---HPFYDTLSSLAWKlpggGRLSAMALIMLAV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 193 GIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVI 272
Cdd:PRK11618 173 VAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVV 252
|
250 260
....*....|....*....|....*.
gi 499272609 273 IGGTGLFGGQGSVLGTLVGALIIGMI 298
Cdd:PRK11618 253 IGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
56-324 |
4.43e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 90.78 E-value: 4.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 56 NLLNLLRQISVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKL 134
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 135 RIPSFITTLGMLSIYSGATL----VLSKGMPISGLQNDLFRSLVAGRLFGVVPAQVIWMVAAgIFGTYLLLFTRFGYNVF 210
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALflvtGILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLV-LALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 211 ATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDP-QTGNGLELSVIAAVIIggtglfGGQGSVLGTL 289
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVL------GGAGSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 499272609 290 VGALIIGMISN-GTVLLGVDSYYEPVAHGTVILLAV 324
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
65-324 |
6.44e-18 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 81.94 E-value: 6.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 65 SVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALaIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTL 143
Cdd:cd06574 2 LIYAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAIL-IVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 144 GMLSIYSGATLVLSKGMPISGLQNDLFRSLVAGRLFGVV---PAQVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAK 220
Cdd:cd06574 81 LIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGTlsiPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 221 AVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVII--GGTGLFGGQGSVLGTLVGALIIGMI 298
Cdd:cd06574 161 SLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIggAIVGRRTIKASILGVIIGAILYRIA 240
|
250 260
....*....|....*....|....*.
gi 499272609 299 SNGTVLLGVDSYYEPVAHGTVILLAV 324
Cdd:cd06574 241 LALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
65-321 |
2.19e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 69.00 E-value: 2.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 65 SVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSG-INGVITTKLR----IPS 138
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVlLERLVLRPLRgaplLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 139 FITTLGMLSIYSGATLVLSKGMPISGLQNDLFRSLVAGRLFGVVPAQVIWMVAAGIFGTYLLL-FTRFGYNVFATGGNKN 217
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLrRTRLGRAIRAVAQNPE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 218 AAKAVGINTDRVKILAFVVSGIMVGVTSfILVGWFRGVDPQTGNGLELSVIAAVIIGGTGlfggqgSVLGTLVGALIIGM 297
Cdd:cd06582 166 AARLLGINVRRVFALTFALGAALAGLAG-VLLAPITGVSPTMGLLLLLKAFAAVVLGGLG------SIPGAVVGGLLLGL 238
|
250 260
....*....|....*....|....
gi 499272609 298 ISNGTVLLGVDSYYEPVAHGTVIL 321
Cdd:cd06582 239 AESLAAAYLSSGYKDAVAFVLLIL 262
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
67-325 |
6.99e-12 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 65.24 E-value: 6.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 67 IGILAVGSTFIFISGEIDLSVGALLGLLAmICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGML 146
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCA-IALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 147 SIYSGATLVLSKGMPISGLQN-----DLFRSLVAGRLFGVVPAQVIWMVAAGIFgTYLLLFTRFGYNVFATGGNKNAAKA 221
Cdd:PRK15038 124 YLFGGSALLLSGMAGATGYEGiggfpMAFTDFANLDVLGLPVPLIIFLICLLVF-WLLMHRTHAGRNVFLIGQSPRVALY 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 222 VGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVIIGGTGLFGGQGSVLGTLVGALIIGMISNG 301
Cdd:PRK15038 203 SAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQG 282
|
250 260
....*....|....*....|....
gi 499272609 302 TVLLGVDSYYEPVAHGTVILLAVI 325
Cdd:PRK15038 283 LQMAGVPNQISSALSGALLIVVVV 306
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
57-325 |
1.13e-11 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 64.33 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 57 LLNLLRQISVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLR 135
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 136 IPSF-ITTLGMLSIysgATLVLSKGMPISGLQNDLFrSLVAGRLFGVVPAQVIWM-------VAAGIFGTYLLLFTRFGY 207
Cdd:COG4177 84 GDYLaIATLAFAEI---VRLLALNLESLTGGADGLS-GIPRPTLFGLDLGSPLAFyylvlalLVLVLLLLRRLVRSRFGR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 208 NVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTgngleLSVIAAVIIGGTGLFGGQGSVLG 287
Cdd:COG4177 160 ALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPES-----FSFLLSIEILLMVVLGGLGSLLG 234
|
250 260 270
....*....|....*....|....*....|....*...
gi 499272609 288 TLVGALIIGMISNgtvLLGVDSYYEPVAHGTVILLAVI 325
Cdd:COG4177 235 PVLGAVLLVLLPE---LLRSLPEYRLLIFGLLLILVVL 269
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
57-326 |
1.29e-11 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 64.31 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 57 LLNLLRQISVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILS-GINGVITTKL 134
Cdd:COG0559 8 LLNGLSLGSIYALIALGLTLIFgVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGvLLERLVIRPL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 135 R----IPSFITTLGMLSIYSGATLVlskgmpISGLQNDLFRSLVAG--RLFGV-VPAQVIWMVAAGI---FGTYLLL-FT 203
Cdd:COG0559 88 RgappLALLLATIGLSLVLQGLVLL------IFGADPRSFPALLSGsvELGGVsIPAYRLFIIVVALvllAALWLFLrRT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 204 RFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSfILVGWFRGVDPQTGNGLELSVIAAVIIggtglfGGQG 283
Cdd:COG0559 162 RLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAG-VLLAPIYSVSPTMGFLLGLKAFAAVVL------GGLG 234
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 499272609 284 SVLGTLVGALIIGMISNGTvllgvdSYYEPVAHGTVILLAVII 326
Cdd:COG0559 235 SIPGAVVGGLLLGLAESLG------AAYLPSGYKDVVAFVLLI 271
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
64-325 |
2.52e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 63.23 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 64 ISVIGILAVGSTFIF-ISGEIDLSVGALLGLLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSF-IT 141
Cdd:cd06581 1 ILIYAILALGLNLLLgYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 142 TLGMLSIysgATLVLSKGMPISGLQNDL--FRSLVAGRLFGVVPAQVIW----MVAAGIFGTYLLLFTRFGYNVFATGGN 215
Cdd:cd06581 81 TLAFAEI---VRLLALNWSSLTGGSNGLsgIPPPLLGGLLLSSPLAFYYlvlaVLLLVLLLLRRLVRSPFGRALRAIREN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 216 KNAAKAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTgngleLSVIAAVIIGGTGLFGGQGSVLGTLVGALII 295
Cdd:cd06581 158 EVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPES-----FGFALSIELLLMVVLGGLGSLLGPVLGAALL 232
|
250 260 270
....*....|....*....|....*....|
gi 499272609 296 GMISNgtVLLGVDSYYEPVAHGTVILLAVI 325
Cdd:cd06581 233 VLLPE--LLRSLGPGLRLLVFGLLLILVVL 260
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
79-305 |
2.11e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 57.06 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 79 ISGEIDLSVGALLGLLamICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLsk 158
Cdd:cd06580 22 IGLEGQMLLGAFAAAL--VALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 159 gmpisglqndlfrslvagrlfgvvpaqVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSG 238
Cdd:cd06580 98 ---------------------------LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISG 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499272609 239 IMVGVTSFILV-GWFRGVDPQTGNGLELSVIAAVIIggtglfgGQGSVLGTLVGALIIGMISNGTVLL 305
Cdd:cd06580 151 ALAGLAGAYLVlGVQGRFTEGMSAGYGFIAIAVALL-------GRWNPLGILLAALLFGALEAGGIAL 211
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
68-273 |
1.37e-07 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 52.04 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 68 GILAVGstfIFISGEI----DLSVGALLGLLAMICAALaIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFIT-T 142
Cdd:COG4120 17 AIMALG---VYITFRIldfpDLTVDGSFPLGAAVAAVL-IVAGVNPFLATLAAFLAGALAGLVTGLLHTKLKIPPLLAgI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 143 LGMLSIYSGATLVLSKG-MPISGLQN--DLFRSLVAGRLFGVVPAQVIwMVAAGIFGTYLLLFTRFGYNVFATGGNKNAA 219
Cdd:COG4120 93 LTMTALYSINLRIMGKPnIPLLGEDTifTLLPDLGLPGDWAKLLVLLV-IVLVIKLLLDWFLKTELGLALRATGDNPQMA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499272609 220 KAVGINTDRVKILAFVVSGIMVGVTSFILVGWFRGVDPQTGNGLELSVIAAVII 273
Cdd:COG4120 172 RALGINTDRMKILGLALSNGLVALSGALVAQYQGFADVNMGIGTIVIGLASVII 225
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
93-243 |
9.96e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 49.68 E-value: 9.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 93 LLAMICAALAIKMEGNIYGAALVVVALGAILSGINGVITTKLRIPSFITTLGMLSIYSGATLVLSK---GMPISGLQNDL 169
Cdd:COG1079 46 LMGAFAGFAVAYLTGSPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLALNLLALGLTAFLGRllfGQGGQTPSIPG 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499272609 170 FRSL---------VAGRLFGVVPAQVIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIM 240
Cdd:COG1079 126 LPPIpipglsdipVLGPLLFGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGAL 205
|
...
gi 499272609 241 VGV 243
Cdd:COG1079 206 AGL 208
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
186-249 |
1.04e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 46.65 E-value: 1.04e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499272609 186 VIWMVAAGIFGTYLLLFTRFGYNVFATGGNKNAAKAVGINTDRVKILAFVVSGIMVGVTSFILV 249
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEV 263
|
|
| |
