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Conserved domains on  [gi|499371067|ref|WP_011058645|]
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alpha/beta fold hydrolase [Pseudomonas protegens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Delta12-FADS-like cd03507
The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane ...
44-302 1.44e-76

The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity.


:

Pssm-ID: 239584 [Multi-domain]  Cd Length: 222  Bit Score: 244.06  E-value: 1.44e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  44 RGMLSFVVSYMLYIGAIVAVAHV-----HWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGHIALLPLLYP 118
Cdd:cd03507    1 RSLFRSLSYLAPDILLLALLALAaslllSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 119 FHGWRHMHNMHHANTNNLEMDVDWRPVLRVQYDAMPWWDKLV-YSSTRTWLFWLGTVNYqrhsgfrpsmfhklearnevr 197
Cdd:cd03507   81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRLPYRlYRNPFLMLSLGWPYYL--------------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 198 rsilfmvvaaliylptlvyftgFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKEHWSFNSSRLLLTTDYMYPKW 277
Cdd:cd03507  140 ----------------------LLNVLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADEWNFAQAGLLGTVDRDYGGW 197
                        250       260
                 ....*....|....*....|....*
gi 499371067 278 LLFLTHYISVHTAHHVAPIIPHYNL 302
Cdd:cd03507  198 LNWLTHIIGTHVAHHLFPRIPHYNL 222
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
431-645 4.66e-20

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


:

Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 89.29  E-value: 4.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 431 HGYQWGTGNQTILLVHGWGADSRSLYSFTRVLQRqGFKVATFDAPAHGIS--PGSLSTMTEFKDAVKAAIVALG-DVVGI 507
Cdd:COG0596   15 HYREAGPDGPPVVLLHGLPGSSYEWRPLIPALAA-GYRVIAPDLRGHGRSdkPAGGYTLDDLADDLAALLDALGlERVVL 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 508 VAHSLGGIAAtgalAELAETH--RIKALCLLGSpanlpvVIQRWANgYLKLKPAVVQAMHRELwkrngVPVEHWDIPALG 585
Cdd:COG0596   94 VGHSMGGMVA----LELAARHpeRVAGLVLVDE------VLAALAE-PLRRPGLAPEALAALL-----RALARTDLRERL 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499371067 586 NALQLPTLVLHDLNDPIVPFCEAQQITTLMPWAKLEPVSGLGHVRILSD-AAVLEQVAQFL 645
Cdd:COG0596  158 ARITVPTLVIWGEKDPIVPPALARRLAELLPNAELVVLPGAGHFPPLEQpEAFAAALRDFL 218
 
Name Accession Description Interval E-value
Delta12-FADS-like cd03507
The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane ...
44-302 1.44e-76

The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity.


Pssm-ID: 239584 [Multi-domain]  Cd Length: 222  Bit Score: 244.06  E-value: 1.44e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  44 RGMLSFVVSYMLYIGAIVAVAHV-----HWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGHIALLPLLYP 118
Cdd:cd03507    1 RSLFRSLSYLAPDILLLALLALAaslllSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 119 FHGWRHMHNMHHANTNNLEMDVDWRPVLRVQYDAMPWWDKLV-YSSTRTWLFWLGTVNYqrhsgfrpsmfhklearnevr 197
Cdd:cd03507   81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRLPYRlYRNPFLMLSLGWPYYL--------------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 198 rsilfmvvaaliylptlvyftgFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKEHWSFNSSRLLLTTDYMYPKW 277
Cdd:cd03507  140 ----------------------LLNVLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADEWNFAQAGLLGTVDRDYGGW 197
                        250       260
                 ....*....|....*....|....*
gi 499371067 278 LLFLTHYISVHTAHHVAPIIPHYNL 302
Cdd:cd03507  198 LNWLTHIIGTHVAHHLFPRIPHYNL 222
PLN02598 PLN02598
omega-6 fatty acid desaturase
25-362 6.01e-61

omega-6 fatty acid desaturase


Pssm-ID: 215323 [Multi-domain]  Cd Length: 421  Bit Score: 209.29  E-value: 6.01e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  25 EGLRLTDAI---PKHLYQ---PRVWRGMLSFVVSYMLyigAIVAVAHVHWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFS 98
Cdd:PLN02598  76 DNVTLKDVVktlPKEVFEiddFKAWKTVAITVTSYAL---GLAAIAVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFS 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  99 RNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDWRPVLRVQYDAMPWWDKLVYSSTRTWLFWLGTVNYQR 178
Cdd:PLN02598 153 KNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAMMRAGMGPLWWWASIGHWL 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 179 HSGFRPSMFHKLEaRNEVRRSILFMVVAALIYLPTLVYFTGFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKEH 258
Cdd:PLN02598 233 FWHFDLNKFRPQE-VPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHTAPHIPFKQARE 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 259 WSFNSSRLLLTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALKTAFPGMVREKPMTVQDVWHVARSCHLYD 338
Cdd:PLN02598 312 WNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKHLNKATFNWRLMKTILTQCHVYD 391
                        330       340
                 ....*....|....*....|....
gi 499371067 339 PVNGfYESFDQpaQAAGDPSPPGA 362
Cdd:PLN02598 392 KEKN-YVPFDN--LAPEESQPIAF 412
DesA COG3239
Fatty acid desaturase [Lipid transport and metabolism];
18-314 6.56e-50

Fatty acid desaturase [Lipid transport and metabolism];


Pssm-ID: 442471 [Multi-domain]  Cd Length: 319  Bit Score: 176.46  E-value: 6.56e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  18 LRRSQEIEGLRLTDAIPKhLYQPRVWRGMLSFVVSYMLYIGAIvAVAHVHWmFYLPLWLVAGLGGWGLFCVAHDCGHNSF 97
Cdd:COG3239    7 LTPADEAELRALRARLRA-LLGRRDWRYLLKLALTLALLAALW-LLLSWSW-LALLAALLLGLALAGLFSLGHDAGHGSL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  98 SRNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDWRPVLRvQYDAMPWWDKLVYSstrtWLFWLGTVNYQ 177
Cdd:COG3239   84 FRSRWLNDLLGRLLGLPLGTPYDAWRRSHNRHHAYTNDPGKDPDIGYGVQ-AWRPLYLFQHLLRF----FLLGLGGLYWL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 178 RHSGFRPsmFHKLEARNEVRRSILFMVVAALIYLPTLVYFtGFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKE 257
Cdd:COG3239  159 LALDFLP--LRGRLELKERRLEALLLLLFLAALLALLLAL-GWWAVLLFWLLPLLVAGLLLGLRFYLEHRGEDTGDGEYR 235
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499371067 258 HwsfnssRLLLTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALKTAFP 314
Cdd:COG3239  236 D------QLLGSRNIRGGRLLRWLFGNLNYHIEHHLFPSIPWYRLPEAHRILKELCP 286
FA_desaturase pfam00487
Fatty acid desaturase; Fatty acid desaturases are enzymes that catalyze the insertion of a ...
67-314 4.45e-25

Fatty acid desaturase; Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related: Family 1 composed of Stearoyl-CoA desaturases (SCD) and Family 2 composed of Bacterial fatty acid desaturases, Plant stearoyl-acyl-carrier-protein desaturase and Cyanobacterial DesA. Members of this entry are ER integral membrane proteins that share the same mushroom-shaped fold consisting of four transmembrane helices (TM1-TM4) which anchor them to the membrane, capped by a cytosolic domain containing a unique 9-10 histidine- coordinating di metal (di-iron) catalytic centre. The structure of mouse stearoyl-CoA desaturase (SDC) revealed that TM2 and TM4 are longer than TM1 and TM3 and protrude into the cytosolic domain, providing three of the nine histidine residues that coordinate the two metal ions, while the other histidine residues are provided by the soluble domain in this enzyme.


Pssm-ID: 425713 [Multi-domain]  Cd Length: 252  Bit Score: 104.74  E-value: 4.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067   67 HWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFS----RNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDW 142
Cdd:pfam00487   1 SWLALLLALLLGLFLLGITGSLAHEASHGALFkkrrLNRWLNDLLGRLAGLPLGISYSAWRIAHLVHHRYTNGPDKDPDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  143 RPVLRvqyDAMPWWDKLVYsstRTWLFWLGTVNYQRHSGFRPSMFHKLEARNEVRRSILFMVVAALIYLPTLVYFTGFTG 222
Cdd:pfam00487  81 APLAS---RFRGLLRYLLR---WLLGLLVLAWLLALVLPLWLRRLARRKRPIKSRRRRWRLIAWLLLLAAWLGLWLGFLG 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  223 LFLYFIAPWLATHA-WFSLTTMMHHISDETPFLTKEHWSFNSsrlllTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYN 301
Cdd:pfam00487 155 LGGLLLLLWLLPLLvFGFLLALIFNYLEHYGGDWGERPVETT-----RSIRSPNWWLNLLTGNLNYHIEHHLFPGVPWYR 229
                         250
                  ....*....|...
gi 499371067  302 LPEAQAALKTAFP 314
Cdd:pfam00487 230 LPKLHRRLREALP 242
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
431-645 4.66e-20

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 89.29  E-value: 4.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 431 HGYQWGTGNQTILLVHGWGADSRSLYSFTRVLQRqGFKVATFDAPAHGIS--PGSLSTMTEFKDAVKAAIVALG-DVVGI 507
Cdd:COG0596   15 HYREAGPDGPPVVLLHGLPGSSYEWRPLIPALAA-GYRVIAPDLRGHGRSdkPAGGYTLDDLADDLAALLDALGlERVVL 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 508 VAHSLGGIAAtgalAELAETH--RIKALCLLGSpanlpvVIQRWANgYLKLKPAVVQAMHRELwkrngVPVEHWDIPALG 585
Cdd:COG0596   94 VGHSMGGMVA----LELAARHpeRVAGLVLVDE------VLAALAE-PLRRPGLAPEALAALL-----RALARTDLRERL 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499371067 586 NALQLPTLVLHDLNDPIVPFCEAQQITTLMPWAKLEPVSGLGHVRILSD-AAVLEQVAQFL 645
Cdd:COG0596  158 ARITVPTLVIWGEKDPIVPPALARRLAELLPNAELVVLPGAGHFPPLEQpEAFAAALRDFL 218
Abhydrolase_6 pfam12697
Alpha/beta hydrolase family; This family contains alpha/beta hydrolase enzymes of diverse ...
442-639 1.12e-09

Alpha/beta hydrolase family; This family contains alpha/beta hydrolase enzymes of diverse specificity.


Pssm-ID: 463673 [Multi-domain]  Cd Length: 211  Bit Score: 58.64  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  442 ILLVHGWGADSRSLYSftrvLQRQGFKVATFDAPAHGISPGSLSTMTEFKD--AVKAAIVALGDVVgIVAHSLGGIAATG 519
Cdd:pfam12697   1 VVLVHGAGLSAAPLAA----LLAAGVAVLAPDLPGHGSSSPPPLDLADLADlaALLDELGAARPVV-LVGHSLGGAVALA 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  520 ALaelaetHRIKALCLLGSPANLPVviqRWANGYLKLKPAVVQAMHRELWKRNGVPVEHW---------------DIPAL 584
Cdd:pfam12697  76 AA------AAALVVGVLVAPLAAPP---GLLAALLALLARLGAALAAPAWLAAESLARGFlddlpadaewaaalaRLAAL 146
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499371067  585 GNALQL-----------PTLVLHDlNDPIVPFcEAQQITTLMPWAKLEPVSGLGHVRILSDAAVLE 639
Cdd:pfam12697 147 LAALALlplaawrdlpvPVLVLAE-EDRLVPE-LAQRLLAALAGARLVVLPGAGHLPLDDPEEVAE 210
PRK14875 PRK14875
acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
438-645 5.03e-09

acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional


Pssm-ID: 184875 [Multi-domain]  Cd Length: 371  Bit Score: 58.80  E-value: 5.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 438 GNQTILLVHGWGADsRSLYSFTRVLQRQGFKVATFDAPAHGIS-----PGSLstmtefkDAVKAAIVALGDVVGI----- 507
Cdd:PRK14875 130 DGTPVVLIHGFGGD-LNNWLFNHAALAAGRPVIALDLPGHGASskavgAGSL-------DELAAAVLAFLDALGIerahl 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 508 VAHSLGGIAATgALAELAEThRIKALCLLgSPANLPVVIQRwanGYLK----------LKPAVVQAMH------REL--- 568
Cdd:PRK14875 202 VGHSMGGAVAL-RLAARAPQ-RVASLTLI-APAGLGPEING---DYIDgfvaaesrreLKPVLELLFAdpalvtRQMved 275
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 569 ---WKR-NGVP--------------VEHWDIPALGNALQLPTLVLHDLNDPIVPFCEAQQittLMPWAKLEPVSGLGH-V 629
Cdd:PRK14875 276 llkYKRlDGVDdalraladalfaggRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQG---LPDGVAVHVLPGAGHmP 352
                        250
                 ....*....|....*.
gi 499371067 630 RILSDAAVLEQVAQFL 645
Cdd:PRK14875 353 QMEAAADVNRLLAEFL 368
bioH TIGR01738
pimelyl-[acyl-carrier protein] methyl ester esterase; This CoA-binding enzyme is required for ...
436-647 1.07e-05

pimelyl-[acyl-carrier protein] methyl ester esterase; This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]


Pssm-ID: 273783 [Multi-domain]  Cd Length: 245  Bit Score: 47.50  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  436 GTGNQTILLVHGWGADSRSLYSFTRVLqRQGFKVATFDAPAHGISPG-SLSTMTEFKDAVKAAIVALGDVVGivaHSLGG 514
Cdd:TIGR01738   1 GQGNVHLVLIHGWGMNAEVFRCLDEEL-SAHFTLHLVDLPGHGRSRGfGPLSLADMAEAIAAQAPDPAIWLG---WSLGG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  515 IAATGALAELAEthRIKALCLLGSPANLpVVIQRWANGylkLKPAV---------------------VQAMH-------- 565
Cdd:TIGR01738  77 LVALHIAATHPD--RVRALVTVASSPCF-SAREDWPEG---IKPDVltgfqqqlsddyqrtierflaLQTLGtptarqda 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  566 ---RELWKRNGVP-----------VEHWDIPALGNALQLPTLVLHDLNDPIVPFCEAQQITTLMPWAKLEPVSGLGHVRI 631
Cdd:TIGR01738 151 ralKQTLLARPTPnvqvlqagleiLATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPMLDKLAPHSELYIFAKAAHAPF 230
                         250
                  ....*....|....*.
gi 499371067  632 LSDAavlEQVAQFLVE 647
Cdd:TIGR01738 231 LSHA---EAFCALLVA 243
 
Name Accession Description Interval E-value
Delta12-FADS-like cd03507
The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane ...
44-302 1.44e-76

The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity.


Pssm-ID: 239584 [Multi-domain]  Cd Length: 222  Bit Score: 244.06  E-value: 1.44e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  44 RGMLSFVVSYMLYIGAIVAVAHV-----HWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGHIALLPLLYP 118
Cdd:cd03507    1 RSLFRSLSYLAPDILLLALLALAaslllSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 119 FHGWRHMHNMHHANTNNLEMDVDWRPVLRVQYDAMPWWDKLV-YSSTRTWLFWLGTVNYqrhsgfrpsmfhklearnevr 197
Cdd:cd03507   81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRLPYRlYRNPFLMLSLGWPYYL--------------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 198 rsilfmvvaaliylptlvyftgFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKEHWSFNSSRLLLTTDYMYPKW 277
Cdd:cd03507  140 ----------------------LLNVLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADEWNFAQAGLLGTVDRDYGGW 197
                        250       260
                 ....*....|....*....|....*
gi 499371067 278 LLFLTHYISVHTAHHVAPIIPHYNL 302
Cdd:cd03507  198 LNWLTHIIGTHVAHHLFPRIPHYNL 222
PLN02598 PLN02598
omega-6 fatty acid desaturase
25-362 6.01e-61

omega-6 fatty acid desaturase


Pssm-ID: 215323 [Multi-domain]  Cd Length: 421  Bit Score: 209.29  E-value: 6.01e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  25 EGLRLTDAI---PKHLYQ---PRVWRGMLSFVVSYMLyigAIVAVAHVHWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFS 98
Cdd:PLN02598  76 DNVTLKDVVktlPKEVFEiddFKAWKTVAITVTSYAL---GLAAIAVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFS 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  99 RNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDWRPVLRVQYDAMPWWDKLVYSSTRTWLFWLGTVNYQR 178
Cdd:PLN02598 153 KNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAMMRAGMGPLWWWASIGHWL 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 179 HSGFRPSMFHKLEaRNEVRRSILFMVVAALIYLPTLVYFTGFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKEH 258
Cdd:PLN02598 233 FWHFDLNKFRPQE-VPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHTAPHIPFKQARE 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 259 WSFNSSRLLLTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALKTAFPGMVREKPMTVQDVWHVARSCHLYD 338
Cdd:PLN02598 312 WNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKHLNKATFNWRLMKTILTQCHVYD 391
                        330       340
                 ....*....|....*....|....
gi 499371067 339 PVNGfYESFDQpaQAAGDPSPPGA 362
Cdd:PLN02598 392 KEKN-YVPFDN--LAPEESQPIAF 412
DesA COG3239
Fatty acid desaturase [Lipid transport and metabolism];
18-314 6.56e-50

Fatty acid desaturase [Lipid transport and metabolism];


Pssm-ID: 442471 [Multi-domain]  Cd Length: 319  Bit Score: 176.46  E-value: 6.56e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  18 LRRSQEIEGLRLTDAIPKhLYQPRVWRGMLSFVVSYMLYIGAIvAVAHVHWmFYLPLWLVAGLGGWGLFCVAHDCGHNSF 97
Cdd:COG3239    7 LTPADEAELRALRARLRA-LLGRRDWRYLLKLALTLALLAALW-LLLSWSW-LALLAALLLGLALAGLFSLGHDAGHGSL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  98 SRNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDWRPVLRvQYDAMPWWDKLVYSstrtWLFWLGTVNYQ 177
Cdd:COG3239   84 FRSRWLNDLLGRLLGLPLGTPYDAWRRSHNRHHAYTNDPGKDPDIGYGVQ-AWRPLYLFQHLLRF----FLLGLGGLYWL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 178 RHSGFRPsmFHKLEARNEVRRSILFMVVAALIYLPTLVYFtGFTGLFLYFIAPWLATHAWFSLTTMMHHISDETPFLTKE 257
Cdd:COG3239  159 LALDFLP--LRGRLELKERRLEALLLLLFLAALLALLLAL-GWWAVLLFWLLPLLVAGLLLGLRFYLEHRGEDTGDGEYR 235
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499371067 258 HwsfnssRLLLTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALKTAFP 314
Cdd:COG3239  236 D------QLLGSRNIRGGRLLRWLFGNLNYHIEHHLFPSIPWYRLPEAHRILKELCP 286
PLN02498 PLN02498
omega-3 fatty acid desaturase
32-319 4.26e-32

omega-3 fatty acid desaturase


Pssm-ID: 215275 [Multi-domain]  Cd Length: 450  Bit Score: 129.56  E-value: 4.26e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  32 AIPKHLYQPRVWRGMlSFVVSYMLYIGAIVAVAHV--HWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGH 109
Cdd:PLN02498 110 AIPKHCWVKNPWRSM-SYVVRDVAVVFGLAAAAAYfnNWVVWPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGH 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 110 IALLPLLYPFHGWRHMHNMHHANTNNLEMDVDWRPVLRVQYDAMpwwDKLvyssTRTWLFWLGTVN-------YQRHSGF 182
Cdd:PLN02498 189 LLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKSL---DKV----TRTLRFTLPFPMlaypfylWSRSPGK 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 183 RPSMFH-------KLEARNEVRRSILFMVVAALiylptLVYFTGFTG----LFLYFIAPWLAThAWFSLTTMMHH--ISD 249
Cdd:PLN02498 262 KGSHFHpdsdlfvPKERKDVITSTACWTAMAAL-----LVCLSFVMGpiqmLKLYGIPYWIFV-MWLDFVTYLHHhgHED 335
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499371067 250 ETPFLTKEHWSFnsSRLLLTT---DYmypKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALKTAFPGMVRE 319
Cdd:PLN02498 336 KLPWYRGKEWSY--LRGGLTTldrDY---GWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYRE 403
FA_desaturase pfam00487
Fatty acid desaturase; Fatty acid desaturases are enzymes that catalyze the insertion of a ...
67-314 4.45e-25

Fatty acid desaturase; Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related: Family 1 composed of Stearoyl-CoA desaturases (SCD) and Family 2 composed of Bacterial fatty acid desaturases, Plant stearoyl-acyl-carrier-protein desaturase and Cyanobacterial DesA. Members of this entry are ER integral membrane proteins that share the same mushroom-shaped fold consisting of four transmembrane helices (TM1-TM4) which anchor them to the membrane, capped by a cytosolic domain containing a unique 9-10 histidine- coordinating di metal (di-iron) catalytic centre. The structure of mouse stearoyl-CoA desaturase (SDC) revealed that TM2 and TM4 are longer than TM1 and TM3 and protrude into the cytosolic domain, providing three of the nine histidine residues that coordinate the two metal ions, while the other histidine residues are provided by the soluble domain in this enzyme.


Pssm-ID: 425713 [Multi-domain]  Cd Length: 252  Bit Score: 104.74  E-value: 4.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067   67 HWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFS----RNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDW 142
Cdd:pfam00487   1 SWLALLLALLLGLFLLGITGSLAHEASHGALFkkrrLNRWLNDLLGRLAGLPLGISYSAWRIAHLVHHRYTNGPDKDPDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  143 RPVLRvqyDAMPWWDKLVYsstRTWLFWLGTVNYQRHSGFRPSMFHKLEARNEVRRSILFMVVAALIYLPTLVYFTGFTG 222
Cdd:pfam00487  81 APLAS---RFRGLLRYLLR---WLLGLLVLAWLLALVLPLWLRRLARRKRPIKSRRRRWRLIAWLLLLAAWLGLWLGFLG 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  223 LFLYFIAPWLATHA-WFSLTTMMHHISDETPFLTKEHWSFNSsrlllTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYN 301
Cdd:pfam00487 155 LGGLLLLLWLLPLLvFGFLLALIFNYLEHYGGDWGERPVETT-----RSIRSPNWWLNLLTGNLNYHIEHHLFPGVPWYR 229
                         250
                  ....*....|...
gi 499371067  302 LPEAQAALKTAFP 314
Cdd:pfam00487 230 LPKLHRRLREALP 242
Delta6-FADS-like cd03506
The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: ...
72-310 9.10e-23

The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.


Pssm-ID: 239583 [Multi-domain]  Cd Length: 204  Bit Score: 96.56  E-value: 9.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  72 LPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDwrpvlrVQYD 151
Cdd:cd03506    1 LLLAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPD------IDTL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 152 AMPWWDKLVYSSTRTWLFWlgtVNYQRhsgfrpsmfhklearnevrrsILFMVVAALiylptlvyftgftgLFLYFIAPW 231
Cdd:cd03506   75 PLLARSEPAFGKDQKKRFL---HRYQH---------------------FYFFPLLAL--------------LLLAFLVVQ 116
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 232 LATHAWFSLTTMMHHISDETPFL-TKEHWSFNSSRLLLTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALK 310
Cdd:cd03506  117 LAGGLWLAVVFQLNHFGMPVEDPpGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPKVAPLVR 196
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
431-645 4.66e-20

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 89.29  E-value: 4.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 431 HGYQWGTGNQTILLVHGWGADSRSLYSFTRVLQRqGFKVATFDAPAHGIS--PGSLSTMTEFKDAVKAAIVALG-DVVGI 507
Cdd:COG0596   15 HYREAGPDGPPVVLLHGLPGSSYEWRPLIPALAA-GYRVIAPDLRGHGRSdkPAGGYTLDDLADDLAALLDALGlERVVL 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 508 VAHSLGGIAAtgalAELAETH--RIKALCLLGSpanlpvVIQRWANgYLKLKPAVVQAMHRELwkrngVPVEHWDIPALG 585
Cdd:COG0596   94 VGHSMGGMVA----LELAARHpeRVAGLVLVDE------VLAALAE-PLRRPGLAPEALAALL-----RALARTDLRERL 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499371067 586 NALQLPTLVLHDLNDPIVPFCEAQQITTLMPWAKLEPVSGLGHVRILSD-AAVLEQVAQFL 645
Cdd:COG0596  158 ARITVPTLVIWGEKDPIVPPALARRLAELLPNAELVVLPGAGHFPPLEQpEAFAAALRDFL 218
PldB COG2267
Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];
418-645 3.77e-19

Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];


Pssm-ID: 441868 [Multi-domain]  Cd Length: 221  Bit Score: 86.59  E-value: 3.77e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 418 AQRFHIKGIPGVP-HGYQWGTGNQ---TILLVHGWGADSRSLYSFTRVLQRQGFKVATFDAPAHGISPGSLSTMTEFKDA 493
Cdd:COG2267    3 RRLVTLPTRDGLRlRGRRWRPAGSprgTVVLVHGLGEHSGRYAELAEALAAAGYAVLAFDLRGHGRSDGPRGHVDSFDDY 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 494 VK------AAIVALGDV-VGIVAHSLGGIAATGALAELAetHRIKALCLLgSPANLpvviqrwANGYLKLKPAVVQAMHr 566
Cdd:COG2267   83 VDdlraalDALRARPGLpVVLLGHSMGGLIALLYAARYP--DRVAGLVLL-APAYR-------ADPLLGPSARWLRALR- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 567 elwkrngvpvehwdIPALGNALQLPTLVLHDLNDPIVPFCEAQQI-TTLMPWAKLEPVSGLGHVRILSD--AAVLEQVAQ 643
Cdd:COG2267  152 --------------LAEALARIDVPVLVLHGGADRVVPPEAARRLaARLSPDVELVLLPGARHELLNEParEEVLAAILA 217

                 ..
gi 499371067 644 FL 645
Cdd:COG2267  218 WL 219
Membrane-FADS-like cd01060
The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane ...
68-177 3.92e-19

The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXX(X)H, HXX(X)HH, and HXXHH (an additional conserved histidine residue is seen between clusters 2 and 3). Spectroscopic and genetic evidence point to a nitrogen-rich coordination environment located in the cytoplasm with as many as eight histidines coordinating the two iron ions and a carboxylate residue bridging the two metals in the Pseudomonas oleovorans alkane hydroxylase (AlkB). In addition, the eight histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the rat stearoyl CoA delta-9 desaturase.


Pssm-ID: 238511 [Multi-domain]  Cd Length: 122  Bit Score: 83.67  E-value: 3.92e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  68 WMFYLPLWLVAGLGgwgLFCVAHDCGHNSFSRNRSFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDW----- 142
Cdd:cd01060    1 LLLALLLGLLGGLG---LTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDSavnyl 77
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 499371067 143 --RPVLRVQYDAMPWWDKLVYSSTRTWLFWL-GTVNYQ 177
Cdd:cd01060   78 ehYGGDRPFDTDGEWLRTTDNSRNGWLNLLLtGGLGYH 115
PLN02505 PLN02505
omega-6 fatty acid desaturase
32-310 3.80e-18

omega-6 fatty acid desaturase


Pssm-ID: 178121  Cd Length: 381  Bit Score: 86.66  E-value: 3.80e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  32 AIPKHLYQPRVWRGmLSFVV------SYMLYIgAIVAVAHV-HWMFYL--PL-WLVAGLGGWGLFCVAHDCGHNSFSRNR 101
Cdd:PLN02505  39 AIPPHCFKRSVLRS-FSYLVydlliaALLYYV-ATNYIPLLpGPLSYVawPLyWAAQGCVLTGVWVIAHECGHHAFSDYQ 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 102 SFNHILGHIALLPLLYPFHGWRHMHNMHHANTNNLEMDVDWRPvlrVQYDAMPWWDK-----------LVYSSTRTWLFW 170
Cdd:PLN02505 117 WLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVP---KKKSALPWYSKylnnppgrllhIVVQLTLGWPLY 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 171 LgTVN-----YQR-HSGFRPS--MFHKLEaRNEVRRS--ILFMVVAALIYLpTLVYftGFTGLFLYFIAPWLATHAWFSL 240
Cdd:PLN02505 194 L-AFNvsgrpYDRfACHFDPYspIFNDRE-RLQIYISdaGILAVSFGLYRL-AAAK--GLAWVLCVYGVPLLIVNAFLVL 268
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 241 TTMMHHISDETPFLTKEHWSFNSSRlLLTTDYMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPEAQAALK 310
Cdd:PLN02505 269 ITYLQHTHPALPHYDSSEWDWLRGA-LATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIK 337
CrtR_beta-carotene-hydroxylase cd03514
Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the ...
49-313 2.89e-16

Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.


Pssm-ID: 239591 [Multi-domain]  Cd Length: 207  Bit Score: 77.79  E-value: 2.89e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  49 FVVSYMLYIGAIVAvahvHWMFYLPLWLVAGLGGWGLFC---VAHDCGHNSFSRNRSFNHILGHIALLPLLYPFHGWRHM 125
Cdd:cd03514    3 FLISMALVWLSTWG----YVISYLPLWVCFILNTLSLHLagtVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 126 HNMHHANTNNLEMDVDwrpvlrvqYDAMPWWdklvysstrtwlfwlgtvnyqrhsgfrpsmfhklearneVRRSILFMVV 205
Cdd:cd03514   79 HMQHHAHTNDPEKDPD--------HFLLEWL---------------------------------------VARSLFITLL 111
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 206 AALIYLPTLVYFtgftgLFLYFIAPWLATHA---WFSLttMMHHisdetPFLTKEHWsfNSSRLllttdymYPKWLL-FL 281
Cdd:cd03514  112 VIAILFGFLWEL-----LNLWFLPALIVGTYlalFFDW--LPHH-----PFEETQRW--DNSRV-------YPSKLLnPL 170
                        250       260       270
                 ....*....|....*....|....*....|..
gi 499371067 282 THYISVHTAHHVAPIIPHYNLPEAQAALKTAF 313
Cdd:cd03514  171 IMGQNYHLVHHLWPSIPWYRYPEAYYANKPLL 202
YvaK COG1647
Esterase/lipase [Secondary metabolites biosynthesis, transport and catabolism];
413-645 5.26e-16

Esterase/lipase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441253 [Multi-domain]  Cd Length: 246  Bit Score: 78.06  E-value: 5.26e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 413 MSPLGAQRFHIKGipgvphgyqwgtGNQTILLVHGWGADSRSLYSFTRVLQRQGFKVATFDAPAHGISPGSLSTMT--EF 490
Cdd:COG1647    1 MKILGAEPFFLEG------------GRKGVLLLHGFTGSPAEMRPLAEALAKAGYTVYAPRLPGHGTSPEDLLKTTweDW 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 491 KDAVKAAIVAL---GDVVGIVAHSLGGIAAtgalAELAETH-RIKALCLLgSPanlPVVIQRWANGYLKLKPAVVQAMHR 566
Cdd:COG1647   69 LEDVEEAYEILkagYDKVIVIGLSMGGLLA----LLLAARYpDVAGLVLL-SP---ALKIDDPSAPLLPLLKYLARSLRG 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 567 EL--WKRNGVPVEHWD---IPALGNALQL-------------PTLVLHDLNDPIVPFCEAQQITTLM--PWAKLEPVSGL 626
Cdd:COG1647  141 IGsdIEDPEVAEYAYDrtpLRALAELQRLirevrrdlpkitaPTLIIQSRKDEVVPPESARYIYERLgsPDKELVWLEDS 220
                        250       260
                 ....*....|....*....|..
gi 499371067 627 GHVrILSD---AAVLEQVAQFL 645
Cdd:COG1647  221 GHV-ITLDkdrEEVAEEILDFL 241
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
441-650 2.72e-15

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 75.82  E-value: 2.72e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 441 TILLVHGWGAD-SRSLYSFTRVLQRQGFKVATFDAPAHGISPGSLSTmTEFKDAVKA--AIVALGDV----VGIVAHSLG 513
Cdd:COG1506   25 VVVYVHGGPGSrDDSFLPLAQALASRGYAVLAPDYRGYGESAGDWGG-DEVDDVLAAidYLAARPYVdpdrIGIYGHSYG 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 514 GIAATGALAElaETHRIKALCLLGSPANLPVVIQRwANGYLKLKPAVVQAMHRELWKRNgvPVEHWDipalgnALQLPTL 593
Cdd:COG1506  104 GYMALLAAAR--HPDRFKAAVALAGVSDLRSYYGT-TREYTERLMGGPWEDPEAYAARS--PLAYAD------KLKTPLL 172
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499371067 594 VLHDLNDPIVPFCEAQQITTLMPWAK----LEPVSGLGH-VRILSDAAVLEQVAQFLVENVK 650
Cdd:COG1506  173 LIHGEADDRVPPEQAERLYEALKKAGkpveLLVYPGEGHgFSGAGAPDYLERILDFLDRHLK 234
Rhizopine-oxygenase-like cd03511
This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine ...
35-310 4.38e-15

This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.


Pssm-ID: 239588 [Multi-domain]  Cd Length: 285  Bit Score: 76.26  E-value: 4.38e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  35 KHLYQPRVWRGMLSFVVSY-MLYIGAIVAVAHVHWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGHIALL 113
Cdd:cd03511    7 KQLMQRSDAPGLLDTALWLgALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 114 PLLYPFHGWRHMHNMHHANTNNLEMD---VDWRPVLRVQYdampwwdKLVYSSTRTWLFWLGTV--NYQRHSGFRPSMFH 188
Cdd:cd03511   87 MILLPPDFFRWSHARHHRYTQIPGRDpelAVPRPPTLREY-------LLALSGLPYWWGKLRTVfrHAFGAVSEAEKPFI 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 189 KLEARNEVRRSILFMVVAALIYLPTLVYFtGFTGLFLYFIAPwLATHAWFSLttmmhhisdetPFLTKEH-------WSF 261
Cdd:cd03511  160 PAEERPKVVREARAMLAVYAGLIALSLYL-GSPLLVLVWGLP-LLLGQPILR-----------LFLLAEHggcpedaNDL 226
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 499371067 262 NSSRLLLTTdymypkWLL-FLTHYISVHTAHHVAPIIPHYNLPEAQAALK 310
Cdd:cd03511  227 RNTRTTLTN------PPLrFLYWNMPYHAEHHMYPSVPFHALPKLHELIK 270
FrsA COG1073
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ...
441-648 1.91e-11

Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];


Pssm-ID: 440691 [Multi-domain]  Cd Length: 253  Bit Score: 64.55  E-value: 1.91e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 441 TILLVHGWGA--DSRSLYSftRVLQRQGFKVATFDAPAHGISPGSLSTMT--EFKDAVKAA--IVALGDV----VGIVAH 510
Cdd:COG1073   39 AVVVAHGNGGvkEQRALYA--QRLAELGFNVLAFDYRGYGESEGEPREEGspERRDARAAVdyLRTLPGVdperIGLLGI 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 511 SLGGiaATGALAeLAETHRIKALCLLGSPANLPVVI-QRWANGYLKLKPAVVqamHRELWKRNGVPVEHWDIPALGNALQ 589
Cdd:COG1073  117 SLGG--GYALNA-AATDPRVKAVILDSPFTSLEDLAaQRAKEARGAYLPGVP---YLPNVRLASLLNDEFDPLAKIEKIS 190
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499371067 590 LPTLVLHDLNDPIVPFCEAQQITTLMPWAK-LEPVSGLGHVRILS--DAAVLEQVAQFLVEN 648
Cdd:COG1073  191 RPLLFIHGEKDEAVPFYMSEDLYEAAAEPKeLLIVPGAGHVDLYDrpEEEYFDKLAEFFKKN 252
EstA COG1075
Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and ...
442-539 2.29e-10

Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and metabolism];


Pssm-ID: 440693 [Multi-domain]  Cd Length: 106  Bit Score: 57.92  E-value: 2.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 442 ILLVHGWGADSRSLYSFTRVLQRQGFKVATFDAPAHGISPGSLStmTEFKDAVKAAIVALG-DVVGIVAHSLGGIAATGA 520
Cdd:COG1075    8 VVLVHGLGGSAASWAPLAPRLRAAGYPVYALNYPSTNGSIEDSA--EQLAAFVDAVLAATGaEKVDLVGHSMGGLVARYY 85
                         90
                 ....*....|....*....
gi 499371067 521 LAELAETHRIKALCLLGSP 539
Cdd:COG1075   86 LKRLGGAAKVARVVTLGTP 104
Abhydrolase_6 pfam12697
Alpha/beta hydrolase family; This family contains alpha/beta hydrolase enzymes of diverse ...
442-639 1.12e-09

Alpha/beta hydrolase family; This family contains alpha/beta hydrolase enzymes of diverse specificity.


Pssm-ID: 463673 [Multi-domain]  Cd Length: 211  Bit Score: 58.64  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  442 ILLVHGWGADSRSLYSftrvLQRQGFKVATFDAPAHGISPGSLSTMTEFKD--AVKAAIVALGDVVgIVAHSLGGIAATG 519
Cdd:pfam12697   1 VVLVHGAGLSAAPLAA----LLAAGVAVLAPDLPGHGSSSPPPLDLADLADlaALLDELGAARPVV-LVGHSLGGAVALA 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  520 ALaelaetHRIKALCLLGSPANLPVviqRWANGYLKLKPAVVQAMHRELWKRNGVPVEHW---------------DIPAL 584
Cdd:pfam12697  76 AA------AAALVVGVLVAPLAAPP---GLLAALLALLARLGAALAAPAWLAAESLARGFlddlpadaewaaalaRLAAL 146
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499371067  585 GNALQL-----------PTLVLHDlNDPIVPFcEAQQITTLMPWAKLEPVSGLGHVRILSDAAVLE 639
Cdd:pfam12697 147 LAALALlplaawrdlpvPVLVLAE-EDRLVPE-LAQRLLAALAGARLVVLPGAGHLPLDDPEEVAE 210
PRK14875 PRK14875
acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
438-645 5.03e-09

acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional


Pssm-ID: 184875 [Multi-domain]  Cd Length: 371  Bit Score: 58.80  E-value: 5.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 438 GNQTILLVHGWGADsRSLYSFTRVLQRQGFKVATFDAPAHGIS-----PGSLstmtefkDAVKAAIVALGDVVGI----- 507
Cdd:PRK14875 130 DGTPVVLIHGFGGD-LNNWLFNHAALAAGRPVIALDLPGHGASskavgAGSL-------DELAAAVLAFLDALGIerahl 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 508 VAHSLGGIAATgALAELAEThRIKALCLLgSPANLPVVIQRwanGYLK----------LKPAVVQAMH------REL--- 568
Cdd:PRK14875 202 VGHSMGGAVAL-RLAARAPQ-RVASLTLI-APAGLGPEING---DYIDgfvaaesrreLKPVLELLFAdpalvtRQMved 275
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 569 ---WKR-NGVP--------------VEHWDIPALGNALQLPTLVLHDLNDPIVPFCEAQQittLMPWAKLEPVSGLGH-V 629
Cdd:PRK14875 276 llkYKRlDGVDdalraladalfaggRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQG---LPDGVAVHVLPGAGHmP 352
                        250
                 ....*....|....*.
gi 499371067 630 RILSDAAVLEQVAQFL 645
Cdd:PRK14875 353 QMEAAADVNRLLAEFL 368
Abhydrolase_1 pfam00561
alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.
441-564 5.92e-09

alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.


Pssm-ID: 395444 [Multi-domain]  Cd Length: 245  Bit Score: 57.13  E-value: 5.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  441 TILLVHGWGADSRSLYSFTRVLQRQGFKVATFDAPAHGISPGSLS----TMTEFKDAVKAAIVALGDV-VGIVAHSLGGi 515
Cdd:pfam00561   2 PVLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKSSRPKAqddyRTDDLAEDLEYILEALGLEkVNLVGHSMGG- 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 499371067  516 aATGALAELAETHRIKALCLLGSPANlPVVIQRWANGYLKLKPAVVQAM 564
Cdd:pfam00561  81 -LIALAYAAKYPDRVKALVLLGALDP-PHELDEADRFILALFPGFFDGF 127
Hydrolase_4 pfam12146
Serine aminopeptidase, S33; This domain is found in bacteria and eukaryotes and is ...
441-604 2.56e-08

Serine aminopeptidase, S33; This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.


Pssm-ID: 463473 [Multi-domain]  Cd Length: 238  Bit Score: 55.30  E-value: 2.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  441 TILLVHGwGADSRSLYS-FTRVLQRQGFKVATFDAPAHGISPGSLSTMTEFKDAVKAAIVALGDVVG--------IVAHS 511
Cdd:pfam12146   6 VVVLVHG-LGEHSGRYAhLADALAAQGFAVYAYDHRGHGRSDGKRGHVPSFDDYVDDLDTFVDKIREehpglplfLLGHS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  512 LGGIAATGALAELAetHRIKALCL----LGSPANLPVVIQRWA-------------NGYLKLK-----PAVVQAMHRELW 569
Cdd:pfam12146  85 MGGLIAALYALRYP--DKVDGLILsapaLKIKPYLAPPILKLLakllgklfprlrvPNNLLPDslsrdPEVVAAYAADPL 162
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 499371067  570 KRNGVPVeHW---------DIPALGNALQLPTLVLHDLNDPIVP 604
Cdd:pfam12146 163 VHGGISA-RTlyelldageRLLRRAAAITVPLLLLHGGADRVVD 205
Rhizobitoxine-FADS-like cd03510
This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in ...
53-309 1.94e-07

This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.


Pssm-ID: 239587 [Multi-domain]  Cd Length: 175  Bit Score: 51.52  E-value: 1.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  53 YMLYIGAI-VAVAHVHWMFYLPLWLVAGLGGWGLFCVAHDCGHNSFSRNRSFNHILGH-IALLPLLYPFHGWRHMHNMHH 130
Cdd:cd03510    2 WLVIAAAVaLALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNwLAAVPIFQSLAAYRRSHLKHH 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 131 ANTNNlEMDVDWRPVLrvqydampwwdklvysstrtwLFWLgtvnyqrhsgfrpsmfhklearnevrrsilfmvvaaliy 210
Cdd:cd03510   82 RHLGT-EDDPDLALYL---------------------LLWL--------------------------------------- 100
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 211 LPTLVYFTgftgLFLYFIApwLATHAwfslttmmHHISDETPFLTKehwsfnssrllltTDYMYPKW---LLFLTHYISV 287
Cdd:cd03510  101 VPLLTVFP----LIGRIRE--IAEHA--------GVPADEDPDARN-------------TRTTFGGWierLLFAPHNINY 153
                        250       260
                 ....*....|....*....|..
gi 499371067 288 HTAHHVAPIIPHYNLPEAQAAL 309
Cdd:cd03510  154 HLEHHLFPAVPFYNLPKAHRIL 175
PRK10566 PRK10566
esterase; Provisional
413-609 4.93e-06

esterase; Provisional


Pssm-ID: 182555 [Multi-domain]  Cd Length: 249  Bit Score: 48.45  E-value: 4.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 413 MSPLGAQRFHikGIPgVPHGYQWGTGNQ---TILLVHGWgADSRSLYS-FTRVLQRQGFKVATFDAPAHGIS-------- 480
Cdd:PRK10566   1 MIEIETRELA--GIE-VLHAFPAGQRDTplpTVFFYHGF-TSSKLVYSyFAVALAQAGFRVIMPDAPMHGARfsgdearr 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 481 -----PGSLSTMTEF---KDAVKAAIVALGDVVGIVAHSLGGIAATGALAELAETHriKALCLLGSpanlpvviqrwanG 552
Cdd:PRK10566  77 lnhfwQILLQNMQEFptlRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVK--CVASLMGS-------------G 141
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499371067 553 YLK-----LKPAVVQ--AMHRELWKRNGVPVEHWDI----PALGNAlqlPTLVLHDLNDPIVPFCEAQ 609
Cdd:PRK10566 142 YFTslartLFPPLIPetAAQQAEFNNIVAPLAEWEVthqlEQLADR---PLLLWHGLADDVVPAAESL 206
bioH TIGR01738
pimelyl-[acyl-carrier protein] methyl ester esterase; This CoA-binding enzyme is required for ...
436-647 1.07e-05

pimelyl-[acyl-carrier protein] methyl ester esterase; This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]


Pssm-ID: 273783 [Multi-domain]  Cd Length: 245  Bit Score: 47.50  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  436 GTGNQTILLVHGWGADSRSLYSFTRVLqRQGFKVATFDAPAHGISPG-SLSTMTEFKDAVKAAIVALGDVVGivaHSLGG 514
Cdd:TIGR01738   1 GQGNVHLVLIHGWGMNAEVFRCLDEEL-SAHFTLHLVDLPGHGRSRGfGPLSLADMAEAIAAQAPDPAIWLG---WSLGG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  515 IAATGALAELAEthRIKALCLLGSPANLpVVIQRWANGylkLKPAV---------------------VQAMH-------- 565
Cdd:TIGR01738  77 LVALHIAATHPD--RVRALVTVASSPCF-SAREDWPEG---IKPDVltgfqqqlsddyqrtierflaLQTLGtptarqda 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  566 ---RELWKRNGVP-----------VEHWDIPALGNALQLPTLVLHDLNDPIVPFCEAQQITTLMPWAKLEPVSGLGHVRI 631
Cdd:TIGR01738 151 ralKQTLLARPTPnvqvlqagleiLATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPMLDKLAPHSELYIFAKAAHAPF 230
                         250
                  ....*....|....*.
gi 499371067  632 LSDAavlEQVAQFLVE 647
Cdd:TIGR01738 231 LSHA---EAFCALLVA 243
PLN03198 PLN03198
delta6-acyl-lipid desaturase; Provisional
82-302 3.02e-05

delta6-acyl-lipid desaturase; Provisional


Pssm-ID: 178739 [Multi-domain]  Cd Length: 526  Bit Score: 46.99  E-value: 3.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  82 GWglfcVAHDCGHNSFSRNRSFNHILGHIALLPLL-YPFHGWRHMHNMHHANTNnlEMDVDWRPVLRvQYDAMPW--WDK 158
Cdd:PLN03198 251 GW----LSHDFLHNQVFETRWLNEVVGYLIGNAVLgFSTGWWKEKHNLHHAAPN--ECDQLYQPIDE-DIDTLPLiaWSK 323
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 159 LVYSSTRTWLFwLGTVNYQrHSGFRPSMFHklearneVRRSILF--------MVVAALIYL----PTLVYFTGFTGLFLY 226
Cdd:PLN03198 324 DILATVENKTF-LRILQYQ-HLFFMALLFF-------ARGSWLFwswrytstAKLAPADRLlekgTILFHYFWFIGTACY 394
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 227 FIAPWLAThAWFSLTTMM-----------HHISDETPFLTKEhwsFNSSRLLLTTDY---MYPKWllfLTHYISVHTAHH 292
Cdd:PLN03198 395 LLPGWKPL-VWMAVTELMcgmllgfvfvlSHNGMEVYNKSKE---FVNAQIVSTRDIkanIFNDW---FTGGLNRQIEHH 467
                        250
                 ....*....|
gi 499371067 293 VAPIIPHYNL 302
Cdd:PLN03198 468 LFPTMPRHNL 477
Delta4-sphingolipid-FADS-like cd03508
The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the ...
38-304 3.64e-04

The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.


Pssm-ID: 239585 [Multi-domain]  Cd Length: 289  Bit Score: 43.02  E-value: 3.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  38 YQPRVWRGMLSFVVSYmlyigaIVAVAHVHWMFYLPLWLVAGLGG----WGLFCVAHDCGHNSFSRNRSFNHILGHIALL 113
Cdd:cd03508   14 PDPLTKWVVLGVVLLQ------IITAYLLRDSSWWKILLVAYFFGgtinHSLFLAIHEISHNLAFGKPLWNRLFGIFANL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 114 PLLYPFH-GWRHMHNMHHANTNNLEMDVDWrPVLrvqydampwWDKLVYSSTRTWLFWLgtVNYQRHSGFRPSMFHKLE- 191
Cdd:cd03508   88 PIGVPYSiSFKKYHLEHHRYLGEDGLDTDI-PTE---------FEGKLFSTVLGKAIWV--TLQPFFYALRPLFVRPKPp 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 192 ARNEVRRSILFMVVAALIYlptlvYFTGFTGLFLYFIAPWLAthawFSLTTMMHHisdetpFLTkEHWSFNSSrllLTTD 271
Cdd:cd03508  156 TRLEVINIVVQITFDYLIY-----YFFGWKSLAYLLLGSFLG----GGLHPLAGH------FIS-EHYVFTGK---GQET 216
                        250       260       270
                 ....*....|....*....|....*....|...
gi 499371067 272 YMYPKWLLFLTHYISVHTAHHVAPIIPHYNLPE 304
Cdd:cd03508  217 YSYYGPLNLLTFNVGYHNEHHDFPYIPGTRLPK 249
PRK05855 PRK05855
SDR family oxidoreductase;
433-530 1.03e-03

SDR family oxidoreductase;


Pssm-ID: 235628 [Multi-domain]  Cd Length: 582  Bit Score: 42.28  E-value: 1.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 433 YQWGT-GNQTILLVHGWgADSRSLYSFTRVLQRQGFKVATFDAPAHGIS--PGSLS--TMTEFKDAVKAAIVAL--GDVV 505
Cdd:PRK05855  18 YEWGDpDRPTVVLVHGY-PDNHEVWDGVAPLLADRFRVVAYDVRGAGRSsaPKRTAayTLARLADDFAAVIDAVspDRPV 96
                         90       100
                 ....*....|....*....|....*
gi 499371067 506 GIVAHSLGGIAATGALAELAETHRI 530
Cdd:PRK05855  97 HLLAHDWGSIQGWEAVTRPRAAGRI 121
PLN02211 PLN02211
methyl indole-3-acetate methyltransferase
443-535 2.03e-03

methyl indole-3-acetate methyltransferase


Pssm-ID: 215128  Cd Length: 273  Bit Score: 40.64  E-value: 2.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 443 LLVHGWGADSRSLYSFTRVLQRQGFKVATFDAPAHGISPGSLSTMTEFKDAVKAAIVALGDV-----VGIVAHSLGGIAA 517
Cdd:PLN02211  22 VLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSLpenekVILVGHSAGGLSV 101
                         90
                 ....*....|....*....
gi 499371067 518 TGAlaelaeTHRI-KALCL 535
Cdd:PLN02211 102 TQA------IHRFpKKICL 114
Ser_hydrolase pfam06821
Serine hydrolase; Members of this family have serine hydrolase activity. They contain a ...
442-635 3.67e-03

Serine hydrolase; Members of this family have serine hydrolase activity. They contain a conserved serine hydrolase motif, GXSXG/A, where the serine is a putative nucleophile. This family has an alpha-beta hydrolase fold. Eukaryotic members of this family have a conserved LXCXE motif, which binds to retinoblastomas. This motif is absent from prokaryotic members of this family.


Pssm-ID: 399658 [Multi-domain]  Cd Length: 171  Bit Score: 38.85  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  442 ILLVHGWGADS---------RSLYSFTRVLQRQgfkvatFDAPahgispgslsTMTEFKDAVKAAIVALGDVVGIVAHSL 512
Cdd:pfam06821   1 LLIVPGWGGSGpghwqshweRRLPAARRVEQDD------WLQP----------VLDDWVAALSRAVAALPGPVILVAHSL 64
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  513 gGIAATGALAELAETHRIKALcLLGSPANlpvviqrwangylklkPAVVQAMHRELWKRNGVPVEHwdipalgnaLQLPT 592
Cdd:pfam06821  65 -GCLAVAHWAALQLRAKVAGA-LLVAPAD----------------VEERPPRPAALANFAPIPRDP---------LPFPS 117
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 499371067  593 LVLHDLNDPIVPFCEAQQITTlmPW-AKLEPVSGLGHvrILSDA 635
Cdd:pfam06821 118 LVVASRNDPYCPFERAASLAQ--AWgAELVDLGHAGH--INVDS 157
YdeN COG3545
Predicted esterase of the alpha/beta hydrolase fold [General function prediction only];
443-611 4.08e-03

Predicted esterase of the alpha/beta hydrolase fold [General function prediction only];


Pssm-ID: 442766 [Multi-domain]  Cd Length: 170  Bit Score: 38.68  E-value: 4.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 443 LLVHGWGADS---------RSLYSFTRVLQRqgfkvaTFDAPahgispgslsTMTEFKDAVKAAIVAL-GDVVgIVAHSL 512
Cdd:COG3545    1 LIVPGLGGSGpdhwqswweRELPTVRRVEQP------DWDRP----------DLDDWLAALDAAVAAAdGPVV-LVAHSL 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 513 GGIAATGALAELAetHRIKALcLLGSPANLPVviqrwangyLKLKPAVVQAMHrelwkrngvpvehwDIPALgnALQLPT 592
Cdd:COG3545   64 GCLAVAHWAARLP--RKVAGA-LLVAPPDPER---------PGFLPELDAGFA--------------PIPRA--PLPFPS 115
                        170
                 ....*....|....*....
gi 499371067 593 LVLHDLNDPIVPFCEAQQI 611
Cdd:COG3545  116 IVVASRNDPYVSFERAERL 134
CrtW_beta-carotene-ketolase cd03513
Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin ...
57-141 4.41e-03

Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that are capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.


Pssm-ID: 239590 [Multi-domain]  Cd Length: 225  Bit Score: 39.22  E-value: 4.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067  57 IGAIVAVAHVHWMFY----LPLWLVAGLGGW------GLFCVAHDCGHNS-FSRNRSFNHILGHIALlpLLYPFHGWRHM 125
Cdd:cd03513    8 IIAAWLASHVHALFFprgsISLLLIAAVVLLqtflhtGLFIIAHDAMHGSlAPGNPRLNRAIGRLCL--FLYAGFSYDRL 85
                         90
                 ....*....|....*.
gi 499371067 126 HNMHHANTNNLEMDVD 141
Cdd:cd03513   86 LRKHHLHHRHPGTAKD 101
PRK10349 PRK10349
pimeloyl-ACP methyl ester esterase BioH;
435-568 4.56e-03

pimeloyl-ACP methyl ester esterase BioH;


Pssm-ID: 137836 [Multi-domain]  Cd Length: 256  Bit Score: 39.23  E-value: 4.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499371067 435 WGTGNQTILLVHGWGADSRSLYSFTRVLQRQgFKVATFDAPAHGISPG----SLSTMTE--FKDAVKAAIvalgdvvgIV 508
Cdd:PRK10349   9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGfgalSLADMAEavLQQAPDKAI--------WL 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499371067 509 AHSLGGIAATgalaELAETH--RIKALCLLGSPanlPVVIQRwaNGYLKLKPAVVQAMHREL 568
Cdd:PRK10349  80 GWSLGGLVAS----QIALTHpeRVQALVTVASS---PCFSAR--DEWPGIKPDVLAGFQQQL 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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