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Conserved domains on  [gi|499386206|ref|WP_011073673|]
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MULTISPECIES: primosomal replication protein N [Shewanella]

Protein Classification

primosomal replication protein N( domain architecture ID 10025198)

primosomal replication protein N binds single-stranded DNA at the primosome assembly site (PAS)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PriB_gamma TIGR04418
primosomal replication protein PriB; Members of this protein family are primosomal replication ...
 4-100 2.04e-31

primosomal replication protein PriB; Members of this protein family are primosomal replication protein N (PriB), virtually always encoded between rpsF (ribosomal protein S6) and rpsR (ribosomal protein S18). Note that only this short form, as found primarily in the gamma-Proteobacteria, of the single-stranded DNA binding protein family (see model TIGR00621) may partner with PriA and be involved in priming for re-initiation of replication. [DNA metabolism, DNA replication, recombination, and repair]


:

Pssm-ID: 275211  Cd Length: 96  Bit Score: 106.13  E-value: 2.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386206    4 NNLVLSGTITRSRRFK-SPAGIAHSVIMLEHKSQRYEADMLRNVYVQIQVILSGPrFESVADNLKAGVEVQVQGFMTLQQ 82
Cdd:TIGR04418   1 NRLVLSGTVAETPKLRyTPAGIPHLEFVLEHRSQQEEAGQPRQVECEIQAVASGE-LAEKLARLTVGSRVRVTGFLARKS 79

                          90
                  ....*....|....*...
gi 499386206   83 GRNGQnRLVIHAENVELK 100
Cdd:TIGR04418  80 HRNGL-QLVLHAQQIEFI 96
 
Name Accession Description Interval E-value
PriB_gamma TIGR04418
primosomal replication protein PriB; Members of this protein family are primosomal replication ...
 4-100 2.04e-31

primosomal replication protein PriB; Members of this protein family are primosomal replication protein N (PriB), virtually always encoded between rpsF (ribosomal protein S6) and rpsR (ribosomal protein S18). Note that only this short form, as found primarily in the gamma-Proteobacteria, of the single-stranded DNA binding protein family (see model TIGR00621) may partner with PriA and be involved in priming for re-initiation of replication. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 275211  Cd Length: 96  Bit Score: 106.13  E-value: 2.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386206    4 NNLVLSGTITRSRRFK-SPAGIAHSVIMLEHKSQRYEADMLRNVYVQIQVILSGPrFESVADNLKAGVEVQVQGFMTLQQ 82
Cdd:TIGR04418   1 NRLVLSGTVAETPKLRyTPAGIPHLEFVLEHRSQQEEAGQPRQVECEIQAVASGE-LAEKLARLTVGSRVRVTGFLARKS 79

                          90
                  ....*....|....*...
gi 499386206   83 GRNGQnRLVIHAENVELK 100
Cdd:TIGR04418  80 HRNGL-QLVLHAQQIEFI 96
PriB COG2965
Primosomal replication protein N [Replication, recombination and repair];
2-99 3.20e-27

Primosomal replication protein N [Replication, recombination and repair];


Pssm-ID: 442205  Cd Length: 98  Bit Score: 95.26  E-value: 3.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386206   2 TTNNLVLSGTITR--SRRFkSPAGIAHSVIMLEHKSQRYEADMLRNVYVQIQVILSGPrFESVADNLKAGVEVQVQGFMT 79
Cdd:COG2965    1 MMNRLVLSGTVVErpALRY-TPAGIPVLEFVLEHRSEQQEAGLPRQVECEIPAVASGE-LAEKLARLPLGSQVRVTGFLA 78

                         90       100
                 ....*....|....*....|
gi 499386206  80 LQqgRNGQNRLVIHAENVEL 99
Cdd:COG2965   79 RK--SRGSRQLVLHIQQIEL 96
 
Name Accession Description Interval E-value
PriB_gamma TIGR04418
primosomal replication protein PriB; Members of this protein family are primosomal replication ...
 4-100 2.04e-31

primosomal replication protein PriB; Members of this protein family are primosomal replication protein N (PriB), virtually always encoded between rpsF (ribosomal protein S6) and rpsR (ribosomal protein S18). Note that only this short form, as found primarily in the gamma-Proteobacteria, of the single-stranded DNA binding protein family (see model TIGR00621) may partner with PriA and be involved in priming for re-initiation of replication. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 275211  Cd Length: 96  Bit Score: 106.13  E-value: 2.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386206    4 NNLVLSGTITRSRRFK-SPAGIAHSVIMLEHKSQRYEADMLRNVYVQIQVILSGPrFESVADNLKAGVEVQVQGFMTLQQ 82
Cdd:TIGR04418   1 NRLVLSGTVAETPKLRyTPAGIPHLEFVLEHRSQQEEAGQPRQVECEIQAVASGE-LAEKLARLTVGSRVRVTGFLARKS 79

                          90
                  ....*....|....*...
gi 499386206   83 GRNGQnRLVIHAENVELK 100
Cdd:TIGR04418  80 HRNGL-QLVLHAQQIEFI 96
PriB COG2965
Primosomal replication protein N [Replication, recombination and repair];
2-99 3.20e-27

Primosomal replication protein N [Replication, recombination and repair];


Pssm-ID: 442205  Cd Length: 98  Bit Score: 95.26  E-value: 3.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386206   2 TTNNLVLSGTITR--SRRFkSPAGIAHSVIMLEHKSQRYEADMLRNVYVQIQVILSGPrFESVADNLKAGVEVQVQGFMT 79
Cdd:COG2965    1 MMNRLVLSGTVVErpALRY-TPAGIPVLEFVLEHRSEQQEAGLPRQVECEIPAVASGE-LAEKLARLPLGSQVRVTGFLA 78

                         90       100
                 ....*....|....*....|
gi 499386206  80 LQqgRNGQNRLVIHAENVEL 99
Cdd:COG2965   79 RK--SRGSRQLVLHIQQIEL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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