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Conserved domains on  [gi|499407209|ref|WP_011094676|]
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peptidylprolyl isomerase B [Pectobacterium atrosepticum]

Protein Classification

peptidylprolyl isomerase B( domain architecture ID 10793477)

peptidylprolyl isomerase B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10791 PRK10791
peptidylprolyl isomerase B;
1-164 2.45e-115

peptidylprolyl isomerase B;


:

Pssm-ID: 182734  Cd Length: 164  Bit Score: 323.33  E-value: 2.45e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   1 MITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNEANNGLKNTR 80
Cdd:PRK10791   1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  81 GTLAMARTNDPHSATAQFFINLIDNDFLNFRSERADGWGYCVFAEVTEGMDVVDKIKGVATGRSGMHQDVPKEDVVITHV 160
Cdd:PRK10791  81 GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV 160


                 ....
gi 499407209 161 TVSE 164
Cdd:PRK10791 161 TVSE 164
 
Name Accession Description Interval E-value
PRK10791 PRK10791
peptidylprolyl isomerase B;
1-164 2.45e-115

peptidylprolyl isomerase B;


Pssm-ID: 182734  Cd Length: 164  Bit Score: 323.33  E-value: 2.45e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   1 MITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNEANNGLKNTR 80
Cdd:PRK10791   1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  81 GTLAMARTNDPHSATAQFFINLIDNDFLNFRSERADGWGYCVFAEVTEGMDVVDKIKGVATGRSGMHQDVPKEDVVITHV 160
Cdd:PRK10791  81 GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV 160


                 ....
gi 499407209 161 TVSE 164
Cdd:PRK10791 161 TVSE 164
cyclophilin_EcCYP_like cd01920
cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) ...
 3-157 6.29e-92

cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.


Pssm-ID: 238901 [Multi-domain]  Cd Length: 155  Bit Score: 263.92  E-value: 6.29e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   3 TLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNEANNGLKNTRGT 82
Cdd:cd01920    1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKETLKPIKNEAGNGLSNTRGT 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499407209  83 LAMARTNDPHSATAQFFINLIDNDFLNFRSERadgWGYCVFAEVTEGMDVVDKIKGVATGRSGMHQDVPKEDVVI 157
Cdd:cd01920   81 IAMARTNAPDSATSQFFINLKDNASLDYQNEQ---WGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152
PpiB COG0652
Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational ...
 1-164 1.24e-76

Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440417 [Multi-domain]  Cd Length: 159  Bit Score: 225.43  E-value: 1.24e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   1 MITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNaTIKNEANNGLKNTR 80
Cdd:COG0652    8 TVTLETNKGDIVIELFPDKAPKTVANFVSLAKEGFYDGTIFHRVIPGFMIQGGDPTGTGTGGPGY-TIPDEFDPGLKHKR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  81 GTLAMARTNDPHSATAQFFINLIDNDFLnfrseraDGwGYCVFAEVTEGMDVVDKIKGVATGRsgmhQDVPKEDVVITHV 160
Cdd:COG0652   87 GTLAMARAQGPNSAGSQFFIVLGDNPHL-------DG-GYTVFGKVVEGMDVVDKIAAGPTDP----GDGPLEPVVIESV 154


                 ....
gi 499407209 161 TVSE 164
Cdd:COG0652  155 TIVE 158
Pro_isomerase pfam00160
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; The peptidyl-prolyl cis-trans ...
 4-162 6.17e-56

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organizms studied so far and catalyze peptidyl-prolyl isomerization during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.


Pssm-ID: 459694 [Multi-domain]  Cd Length: 149  Bit Score: 172.44  E-value: 6.17e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209    4 LHTN-HGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNE-ANNGLKNTRG 81
Cdd:pfam00160   1 IETNgLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGGKSIFPIPDEiFPLLLKHKRG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   82 TLAMART-NDPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVTEGMDVVDKIKGVATGRsgmhqDVPKEDVVITHV 160
Cdd:pfam00160  81 ALSMANTgPAPNSNGSQFFITLGPAPHLDGK--------YTVFGKVVEGMDVLEKIEKVPTDG-----DRPVKPVKILSC 147


                  ..
gi 499407209  161 TV 162
Cdd:pfam00160 148 GV 149
 
Name Accession Description Interval E-value
PRK10791 PRK10791
peptidylprolyl isomerase B;
1-164 2.45e-115

peptidylprolyl isomerase B;


Pssm-ID: 182734  Cd Length: 164  Bit Score: 323.33  E-value: 2.45e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   1 MITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNEANNGLKNTR 80
Cdd:PRK10791   1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  81 GTLAMARTNDPHSATAQFFINLIDNDFLNFRSERADGWGYCVFAEVTEGMDVVDKIKGVATGRSGMHQDVPKEDVVITHV 160
Cdd:PRK10791  81 GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV 160


                 ....
gi 499407209 161 TVSE 164
Cdd:PRK10791 161 TVSE 164
cyclophilin_EcCYP_like cd01920
cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) ...
 3-157 6.29e-92

cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.


Pssm-ID: 238901 [Multi-domain]  Cd Length: 155  Bit Score: 263.92  E-value: 6.29e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   3 TLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNEANNGLKNTRGT 82
Cdd:cd01920    1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKETLKPIKNEAGNGLSNTRGT 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499407209  83 LAMARTNDPHSATAQFFINLIDNDFLNFRSERadgWGYCVFAEVTEGMDVVDKIKGVATGRSGMHQDVPKEDVVI 157
Cdd:cd01920   81 IAMARTNAPDSATSQFFINLKDNASLDYQNEQ---WGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152
PpiB COG0652
Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational ...
 1-164 1.24e-76

Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440417 [Multi-domain]  Cd Length: 159  Bit Score: 225.43  E-value: 1.24e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   1 MITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNaTIKNEANNGLKNTR 80
Cdd:COG0652    8 TVTLETNKGDIVIELFPDKAPKTVANFVSLAKEGFYDGTIFHRVIPGFMIQGGDPTGTGTGGPGY-TIPDEFDPGLKHKR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  81 GTLAMARTNDPHSATAQFFINLIDNDFLnfrseraDGwGYCVFAEVTEGMDVVDKIKGVATGRsgmhQDVPKEDVVITHV 160
Cdd:COG0652   87 GTLAMARAQGPNSAGSQFFIVLGDNPHL-------DG-GYTVFGKVVEGMDVVDKIAAGPTDP----GDGPLEPVVIESV 154


                 ....
gi 499407209 161 TVSE 164
Cdd:COG0652  155 TIVE 158
PRK10903 PRK10903
peptidylprolyl isomerase A;
2-162 4.32e-65

peptidylprolyl isomerase A;


Pssm-ID: 182824 [Multi-domain]  Cd Length: 190  Bit Score: 197.37  E-value: 4.32e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   2 ITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNEANNGLKNTRG 81
Cdd:PRK10903  31 VLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  82 TLAMARTNDPHSATAQFFINLIDNDFLNfRSERadGWGYCVFAEVTEGMDVVDKIKGVATGRSGMHQDVPKEDVVITHVT 161
Cdd:PRK10903 111 TIAMARTADKDSATSQFFINVADNAFLD-HGQR--DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAK 187


                 .
gi 499407209 162 V 162
Cdd:PRK10903 188 V 188
Pro_isomerase pfam00160
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; The peptidyl-prolyl cis-trans ...
 4-162 6.17e-56

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organizms studied so far and catalyze peptidyl-prolyl isomerization during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.


Pssm-ID: 459694 [Multi-domain]  Cd Length: 149  Bit Score: 172.44  E-value: 6.17e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209    4 LHTN-HGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKETNATIKNE-ANNGLKNTRG 81
Cdd:pfam00160   1 IETNgLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGGKSIFPIPDEiFPLLLKHKRG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   82 TLAMART-NDPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVTEGMDVVDKIKGVATGRsgmhqDVPKEDVVITHV 160
Cdd:pfam00160  81 ALSMANTgPAPNSNGSQFFITLGPAPHLDGK--------YTVFGKVVEGMDVLEKIEKVPTDG-----DRPVKPVKILSC 147


                  ..
gi 499407209  161 TV 162
Cdd:pfam00160 148 GV 149
cyclophilin cd00317
cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains ...
 3-158 2.02e-50

cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing.


Pssm-ID: 238194 [Multi-domain]  Cd Length: 146  Bit Score: 158.58  E-value: 2.02e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   3 TLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAA-GMDQKETNATIKNE-ANNGLKNTR 80
Cdd:cd00317    1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGtGGGGSGPGYKFPDEnFPLKYHHRR 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499407209  81 GTLAMARtNDPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVTEGMDVVDKIKGVATGRsgmhQDVPKEDVVIT 158
Cdd:cd00317   81 GTLSMAN-AGPNTNGSQFFITTAPTPHLDGK--------HTVFGKVVEGMDVVDKIERGDTDE----NGRPIKPVTIS 145
cyclophilin_RING cd01923
cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having ...
 4-164 1.73e-31

cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.


Pssm-ID: 238904 [Multi-domain]  Cd Length: 159  Bit Score: 110.58  E-value: 1.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   4 LHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGG---GFAAGmDQKETNATIKNEANNGLKNT- 79
Cdd:cd01923    4 LHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGdptGTGRG-GESIWGKPFKDEFKPNLSHDg 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  80 RGTLAMARTNdPHSATAQFFInlidndflNFRSERADGWGYCVFAEVTEGMDVVDKIKGVATGRSgmhqDVPKEDVVITH 159
Cdd:cd01923   83 RGVLSMANSG-PNTNGSQFFI--------TYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGT----DRPKEEIKIED 149


                 ....*
gi 499407209 160 VTVSE 164
Cdd:cd01923  150 TSVFV 154
cyclophilin_WD40 cd01927
cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having ...
 3-160 1.80e-31

cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.


Pssm-ID: 238908 [Multi-domain]  Cd Length: 148  Bit Score: 110.24  E-value: 1.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   3 TLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGG-FAAGMDQKET-NATIKNEANNGLKNTR 80
Cdd:cd01927    1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDpTGDGTGGESIwGKEFEDEFSPSLKHDR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  81 -GTLAMARTNdPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVTEGMDVVDKIKGVATGRSgmhqDVPKEDVVITH 159
Cdd:cd01927   81 pYTLSMANAG-PNTNGSQFFITTVATPWLDNK--------HTVFGRVVKGMDVVQRIENVKTDKN----DRPYEDIKIIN 147


                 .
gi 499407209 160 V 160
Cdd:cd01927  148 I 148
Cyclophilin_PPIL3_like cd01928
Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans ...
 2-162 5.23e-28

Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.


Pssm-ID: 238909 [Multi-domain]  Cd Length: 153  Bit Score: 101.74  E-value: 5.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   2 ITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGfAAGMDQKETN---ATIKNEANNGLK- 77
Cdd:cd01928    3 VTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGD-PTGTGKGGESiwgKKFEDEFRETLKh 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  78 NTRGTLAMArTNDPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVTEGMDVVDKIKGVATGRSgmhqDVPKEDVVI 157
Cdd:cd01928   82 DSRGVVSMA-NNGPNTNGSQFFITYAKQPHLDGK--------YTVFGKVIDGFETLDTLEKLPVDKK----YRPLEEIRI 148


                 ....*
gi 499407209 158 THVTV 162
Cdd:cd01928  149 KDVTI 153
cyclophilin_ABH_like cd01926
cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans ...
 9-158 1.11e-25

cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome.


Pssm-ID: 238907 [Multi-domain]  Cd Length: 164  Bit Score: 95.79  E-value: 1.11e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   9 GDIVINTFADKAPVTVENFLNYC-------RSGF-YDNTIFHRVINGFMIQGGGFAAGmdqketNAT----IKNEA---- 72
Cdd:cd01926   15 GRIVMELFADVVPKTAENFRALCtgekgkgGKPFgYKGSTFHRVIPDFMIQGGDFTRG------NGTggksIYGEKfpde 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  73 NNGLKNTR-GTLAMARTNdPHSATAQFFINLIDNDFLnfrseraDGwGYCVFAEVTEGMDVVDKIKGVATGrsgmhQDVP 151
Cdd:cd01926   89 NFKLKHTGpGLLSMANAG-PNTNGSQFFITTVKTPWL-------DG-KHVVFGKVVEGMDVVKKIENVGSG-----NGKP 154


                 ....*..
gi 499407209 152 KEDVVIT 158
Cdd:cd01926  155 KKKVVIA 161
cyclophilin_TLP40_like cd01924
cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) ...
 11-137 2.14e-24

cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.


Pssm-ID: 238905  Cd Length: 176  Bit Score: 92.89  E-value: 2.14e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  11 IVINTFadKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGG---GFAAGMDQKETN---------------------- 65
Cdd:cd01924   11 IVLDGY--NAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGdpqGKNPGFPDPETGksrtipleikpegqkqpvygkt 88

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499407209  66 ---ATIKNEANNGLKNTRGTLAMART-NDPHSATAQFFINLIDNDFLNFRSERADGwGYCVFAEVTEGMDVVDKIK 137
Cdd:cd01924   89 leeAGRYDEQPVLPFNAFGAIAMARTeFDPNSASSQFFFLLKDNELTPSRNNVLDG-RYAVFGYVTDGLDILRELK 163
cyclophilin_CeCYP16-like cd01925
cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) ...
 2-109 2.75e-24

cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.


Pssm-ID: 238906 [Multi-domain]  Cd Length: 171  Bit Score: 92.41  E-value: 2.75e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   2 ITLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFAAGMDQKET--NATIKNEANNGLK-N 78
Cdd:cd01925    8 VILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESiyGEPFKDEFHSRLRfN 87

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499407209  79 TRGTLAMARTNDpHSATAQFFINLIDNDFLN 109
Cdd:cd01925   88 RRGLVGMANAGD-DSNGSQFFFTLDKADELN 117
cyclophilin_SpCYP2_like cd01922
cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) ...
 3-157 2.79e-22

cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.


Pssm-ID: 238903 [Multi-domain]  Cd Length: 146  Bit Score: 86.82  E-value: 2.79e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   3 TLHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQGG---GFAAGmdqketNATI-----KNEANN 74
Cdd:cd01922    1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGdptGTGRG------GASIygkkfEDEIHP 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  75 GLKNT-RGTLAMArTNDPHSATAQFFINLIDNDFLnfrseraDGwGYCVFAEVTEGMDVVDKIKGVATgrsgmHQDVPKE 153
Cdd:cd01922   75 ELKHTgAGILSMA-NAGPNTNGSQFFITLAPTPWL-------DG-KHTIFGRVSKGMKVIENMVEVQT-----QTDRPID 140


                 ....
gi 499407209 154 DVVI 157
Cdd:cd01922  141 EVKI 144
cyclophilin_RRM cd01921
cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a ...
 4-162 4.22e-21

cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.


Pssm-ID: 238902 [Multi-domain]  Cd Length: 166  Bit Score: 84.31  E-value: 4.22e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   4 LHTNHGDIVINTFADKAPVTVENFLNYCRSGFYDNTIFHRVINGFMIQ---------GGGFAAGMDQKETNATIKNEANN 74
Cdd:cd01921    2 LETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQtgdptgtgaGGESIYSQLYGRQARFFEPEILP 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  75 GLK-NTRGTLAMArTNDPHSATAQFFINLIDN-DFLnfrseraDGwGYCVFAEVTEGMDVVDKIKGVATGRSGmhqdVPK 152
Cdd:cd01921   82 LLKhSKKGTVSMV-NAGDNLNGSQFYITLGENlDYL-------DG-KHTVFGQVVEGFDVLEKINDAIVDDDG----RPL 148

                        170
                 ....*....|
gi 499407209 153 EDVVITHVTV 162
Cdd:cd01921  149 KDIRIKHTHI 158
PTZ00060 PTZ00060
cyclophilin; Provisional
 7-158 2.76e-18

cyclophilin; Provisional


Pssm-ID: 240249  Cd Length: 183  Bit Score: 77.19  E-value: 2.76e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   7 NHGDIVINTFADKAPVTVENFLNYC------RSG---FYDNTIFHRVINGFMIQGGGFA--AGMDQKETNATIKNEANNG 75
Cdd:PTZ00060  28 PAGRIVFELFSDVTPKTAENFRALCigdkvgSSGknlHYKGSIFHRIIPQFMCQGGDITnhNGTGGESIYGRKFTDENFK 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  76 LKNTR-GTLAMARTNdPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVTEGMDVVDKIKGVatgrsGMHQDVPKED 154
Cdd:PTZ00060 108 LKHDQpGLLSMANAG-PNTNGSQFFITTVPCPWLDGK--------HVVFGKVIEGMEVVRAMEKE-----GTQSGYPKKP 173


                 ....
gi 499407209 155 VVIT 158
Cdd:PTZ00060 174 VVVT 177
PLN03149 PLN03149
peptidyl-prolyl isomerase H (cyclophilin H); Provisional
 9-158 6.30e-16

peptidyl-prolyl isomerase H (cyclophilin H); Provisional


Pssm-ID: 178694  Cd Length: 186  Bit Score: 71.02  E-value: 6.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209   9 GDIVINTFADKAPVTVENFLNYC-----RSGF---YDNTIFHRVINGFMIQGGGFAAGMDQKETN--ATIKNEANNGLKN 78
Cdd:PLN03149  33 GRIKMELFADIAPKTAENFRQFCtgefrKAGLpqgYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSiyGSKFEDENFIAKH 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499407209  79 T-RGTLAMARTNdPHSATAQFFINLIDNDFLNFRseradgwgYCVFAEVT-EGMDVVDKIKGVATGRSgmhqDVPKEDVV 156
Cdd:PLN03149 113 TgPGLLSMANSG-PNTNGCQFFITCAKCDWLDNK--------HVVFGRVLgDGLLVVRKIENVATGPN----NRPKLACV 179


                 ..
gi 499407209 157 IT 158
Cdd:PLN03149 180 IS 181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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