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Conserved domains on  [gi|499411816|ref|WP_011099283|]
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GerMN domain-containing protein [Clostridium tetani]

Protein Classification

GerMN domain-containing protein( domain architecture ID 10658257)

GerMN (Germane) domain-containing protein similar to Bacillus subtilis spore germination protein GerM, a lipoprotein composed of two GerMN domains

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 254-327 1.00e-10

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


:

Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 57.32  E-value: 1.00e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411816   254 SPSEELSPLINSAIKINKISLdSSKNTVNVDFSDNFvKAMNVGGGIETSMLTCITNTLCNYYNVDKAYITLDGK 327
Cdd:smart00909  13 SPAPGLLSVLPPGTKLLGVSL-SGDGTATVDLSSEF-GNLSAGSEAEQLLLAQLVLTLTEFPGVDKVQILVDGK 84
 
Name Accession Description Interval E-value
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 254-327 1.00e-10

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 57.32  E-value: 1.00e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411816   254 SPSEELSPLINSAIKINKISLdSSKNTVNVDFSDNFvKAMNVGGGIETSMLTCITNTLCNYYNVDKAYITLDGK 327
Cdd:smart00909  13 SPAPGLLSVLPPGTKLLGVSL-SGDGTATVDLSSEF-GNLSAGSEAEQLLLAQLVLTLTEFPGVDKVQILVDGK 84
GerM COG5401
Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];
208-338 4.97e-10

Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444160 [Multi-domain]  Cd Length: 163  Bit Score: 57.71  E-value: 4.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411816 208 NNVPVVQTVKFYHYNAATDKIVFVQNKLNFKTNDTVVSQMEpYFKKSPSEE--LSPLINSAIKINKISLDssKNTVNVDF 285
Cdd:COG5401   32 TSATETVTVTLYFLDEDGGYLVPETREVPKSDEEVAKAALE-ELLAGPTEEngLSSTIPEGTKLLSVKVK--DGTAYVDL 108

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 499411816 286 SDNFVKamNVGGGIETSMLTCITNTLCNYYNVDKAYITLDGKPYSS--GHILLNE 338
Cdd:COG5401  109 SKEFTE--GGGSTGEQLRLYQIVNTLTEFPGVKKVQILVEGKPLEVlgGGLDLSQ 161
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 217-329 2.85e-09

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 54.35  E-value: 2.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411816  217 KFYHYNAATDKIVFVQNKLNFKTNDTVVSQMEPYFKKSPS--EELSPLINSAIKINKISLDSSkNTVNVDFSDNFVKAMn 294
Cdd:pfam10646   1 TLYFLDPDGTKLVPDGRLVPETTDESLAKAALEALLKGPSldPGLRSALPEGTKLLSVTVKDG-GTATVDLSKEFEAGS- 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 499411816  295 vgGGIETSMLTCITNTLCNYYNVDKAYITLDGKPY 329
Cdd:pfam10646  79 --SAERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
 
Name Accession Description Interval E-value
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 254-327 1.00e-10

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 57.32  E-value: 1.00e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411816   254 SPSEELSPLINSAIKINKISLdSSKNTVNVDFSDNFvKAMNVGGGIETSMLTCITNTLCNYYNVDKAYITLDGK 327
Cdd:smart00909  13 SPAPGLLSVLPPGTKLLGVSL-SGDGTATVDLSSEF-GNLSAGSEAEQLLLAQLVLTLTEFPGVDKVQILVDGK 84
GerM COG5401
Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];
208-338 4.97e-10

Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444160 [Multi-domain]  Cd Length: 163  Bit Score: 57.71  E-value: 4.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411816 208 NNVPVVQTVKFYHYNAATDKIVFVQNKLNFKTNDTVVSQMEpYFKKSPSEE--LSPLINSAIKINKISLDssKNTVNVDF 285
Cdd:COG5401   32 TSATETVTVTLYFLDEDGGYLVPETREVPKSDEEVAKAALE-ELLAGPTEEngLSSTIPEGTKLLSVKVK--DGTAYVDL 108

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 499411816 286 SDNFVKamNVGGGIETSMLTCITNTLCNYYNVDKAYITLDGKPYSS--GHILLNE 338
Cdd:COG5401  109 SKEFTE--GGGSTGEQLRLYQIVNTLTEFPGVKKVQILVEGKPLEVlgGGLDLSQ 161
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 217-329 2.85e-09

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 54.35  E-value: 2.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411816  217 KFYHYNAATDKIVFVQNKLNFKTNDTVVSQMEPYFKKSPS--EELSPLINSAIKINKISLDSSkNTVNVDFSDNFVKAMn 294
Cdd:pfam10646   1 TLYFLDPDGTKLVPDGRLVPETTDESLAKAALEALLKGPSldPGLRSALPEGTKLLSVTVKDG-GTATVDLSKEFEAGS- 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 499411816  295 vgGGIETSMLTCITNTLCNYYNVDKAYITLDGKPY 329
Cdd:pfam10646  79 --SAERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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