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Conserved domains on  [gi|499418719|ref|WP_011106183|]
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MULTISPECIES: DUF2089 family protein [Priestia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2089 super family cl22936
Protein of unknown function (DUF2089); This domain, found in various hypothetical prokaryotic ...
 7-55 2.73e-13

Protein of unknown function (DUF2089); This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.


The actual alignment was detected with superfamily member COG3877:

Pssm-ID: 473997  Cd Length: 120  Bit Score: 60.62  E-value: 2.73e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 499418719   7 PSWILALDKESLEFIRKFILNSGSLKNMSNLYDVSYPTVRAKLDRLIKK 55
Cdd:COG3877   36 LCKFARLTPEQLEFVELFLKCRGNLKEVEKELGISYPTVRNRLDEIIAA 84
 
Name Accession Description Interval E-value
COG3877 COG3877
Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family ...
 7-55 2.73e-13

Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family [Transcription];


Pssm-ID: 443085  Cd Length: 120  Bit Score: 60.62  E-value: 2.73e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 499418719   7 PSWILALDKESLEFIRKFILNSGSLKNMSNLYDVSYPTVRAKLDRLIKK 55
Cdd:COG3877   36 LCKFARLTPEQLEFVELFLKCRGNLKEVEKELGISYPTVRNRLDEIIAA 84
DUF2089 pfam09862
Protein of unknown function (DUF2089); This domain, found in various hypothetical prokaryotic ...
 7-72 4.54e-13

Protein of unknown function (DUF2089); This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.


Pssm-ID: 462920  Cd Length: 113  Bit Score: 59.88  E-value: 4.54e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499418719    7 PSWILALDKESLEFIRKFILNSGSLKNMSNLYDVSYPTVRAKLDRLIKKIEIHSQEEDVEFVNMIK 72
Cdd:pfam09862  28 LCEFARLSPEQLEFVELFLKCRGNLKEVEKELGISYPTVRNRLDEILRALGYEPEEEDEEEVPERK 93
 
Name Accession Description Interval E-value
COG3877 COG3877
Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family ...
 7-55 2.73e-13

Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family [Transcription];


Pssm-ID: 443085  Cd Length: 120  Bit Score: 60.62  E-value: 2.73e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 499418719   7 PSWILALDKESLEFIRKFILNSGSLKNMSNLYDVSYPTVRAKLDRLIKK 55
Cdd:COG3877   36 LCKFARLTPEQLEFVELFLKCRGNLKEVEKELGISYPTVRNRLDEIIAA 84
DUF2089 pfam09862
Protein of unknown function (DUF2089); This domain, found in various hypothetical prokaryotic ...
 7-72 4.54e-13

Protein of unknown function (DUF2089); This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.


Pssm-ID: 462920  Cd Length: 113  Bit Score: 59.88  E-value: 4.54e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499418719    7 PSWILALDKESLEFIRKFILNSGSLKNMSNLYDVSYPTVRAKLDRLIKKIEIHSQEEDVEFVNMIK 72
Cdd:pfam09862  28 LCEFARLSPEQLEFVELFLKCRGNLKEVEKELGISYPTVRNRLDEILRALGYEPEEEDEEEVPERK 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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