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Conserved domains on  [gi|499425760|ref|WP_011113224|]
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BfmA/BtgA family mobilization protein [Flavobacterium psychrophilum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mob_BfmA_Nterm super family cl49264
BfmA/BtgA family mobilization N-terminal domain; BfmA was identified as a mobilization protein ...
 3-101 1.76e-04

BfmA/BtgA family mobilization N-terminal domain; BfmA was identified as a mobilization protein for a pathogenicity island that includes fragilysin (Bacteroides fragilis toxin, or BFT) and the fragilysin family metalloproteinase MP-II. BfmA has partner proteins BfmB (a member of the PF18976) and BfmC. The distantly related protein BtgA, also found in Bacteroides fragilis, is a mobilization factor for antibiotic resistance factors.


The actual alignment was detected with superfamily member NF041200:

Pssm-ID: 469104  Cd Length: 81  Bit Score: 38.71  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499425760   3 ENLKITKESKNGLEWLKKNYSfNTYSIAIDTAIQFFKNNNISPRERIYNNyseaifnfknelflkldeFEKKENENTERI 82
Cdd:NF041200   2 KTIRIKKSTAKRFDKFSKKVG-KSYSETLEAMLDFFEVTGISPTDNLGPP------------------ITTAIKKRIDRV 62

                         90
                 ....*....|....*....
gi 499425760  83 IKLNRRFELDYLKPINVKL 101
Cdd:NF041200  63 IAIIKNIEKDQLKPTKEML 81
 
Name Accession Description Interval E-value
mob_BfmA_Nterm NF041200
BfmA/BtgA family mobilization N-terminal domain; BfmA was identified as a mobilization protein ...
 3-101 1.76e-04

BfmA/BtgA family mobilization N-terminal domain; BfmA was identified as a mobilization protein for a pathogenicity island that includes fragilysin (Bacteroides fragilis toxin, or BFT) and the fragilysin family metalloproteinase MP-II. BfmA has partner proteins BfmB (a member of the PF18976) and BfmC. The distantly related protein BtgA, also found in Bacteroides fragilis, is a mobilization factor for antibiotic resistance factors.


Pssm-ID: 469104  Cd Length: 81  Bit Score: 38.71  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499425760   3 ENLKITKESKNGLEWLKKNYSfNTYSIAIDTAIQFFKNNNISPRERIYNNyseaifnfknelflkldeFEKKENENTERI 82
Cdd:NF041200   2 KTIRIKKSTAKRFDKFSKKVG-KSYSETLEAMLDFFEVTGISPTDNLGPP------------------ITTAIKKRIDRV 62

                         90
                 ....*....|....*....
gi 499425760  83 IKLNRRFELDYLKPINVKL 101
Cdd:NF041200  63 IAIIKNIEKDQLKPTKEML 81
 
Name Accession Description Interval E-value
mob_BfmA_Nterm NF041200
BfmA/BtgA family mobilization N-terminal domain; BfmA was identified as a mobilization protein ...
 3-101 1.76e-04

BfmA/BtgA family mobilization N-terminal domain; BfmA was identified as a mobilization protein for a pathogenicity island that includes fragilysin (Bacteroides fragilis toxin, or BFT) and the fragilysin family metalloproteinase MP-II. BfmA has partner proteins BfmB (a member of the PF18976) and BfmC. The distantly related protein BtgA, also found in Bacteroides fragilis, is a mobilization factor for antibiotic resistance factors.


Pssm-ID: 469104  Cd Length: 81  Bit Score: 38.71  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499425760   3 ENLKITKESKNGLEWLKKNYSfNTYSIAIDTAIQFFKNNNISPRERIYNNyseaifnfknelflkldeFEKKENENTERI 82
Cdd:NF041200   2 KTIRIKKSTAKRFDKFSKKVG-KSYSETLEAMLDFFEVTGISPTDNLGPP------------------ITTAIKKRIDRV 62

                         90
                 ....*....|....*....
gi 499425760  83 IKLNRRFELDYLKPINVKL 101
Cdd:NF041200  63 IAIIKNIEKDQLKPTKEML 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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