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Conserved domains on  [gi|499445287|ref|WP_011132751|]
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MULTISPECIES: high light inducible protein [Prochlorococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02337 super family cl10424
putative high light inducible protein
 1-35 6.39e-13

putative high light inducible protein


The actual alignment was detected with superfamily member PHA02337:

Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 54.59  E-value: 6.39e-13
                        10        20        30
                ....*....|....*....|....*....|....*
gi 499445287  1 MTPEAERFNGWAAMLGFVAAVGAYVTTGQIIPGWF 35
Cdd:PHA02337  1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
 
Name Accession Description Interval E-value
PHA02337 PHA02337
putative high light inducible protein
 1-35 6.39e-13

putative high light inducible protein


Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 54.59  E-value: 6.39e-13
                        10        20        30
                ....*....|....*....|....*....|....*
gi 499445287  1 MTPEAERFNGWAAMLGFVAAVGAYVTTGQIIPGWF 35
Cdd:PHA02337  1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 2-35 2.55e-05

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 36.07  E-value: 2.55e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 499445287  2 TPEAERFNGWAAMLGFVAAVGAYVTTGQIIPGWF 35
Cdd:COG5743  26 TPYAERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
 
Name Accession Description Interval E-value
PHA02337 PHA02337
putative high light inducible protein
 1-35 6.39e-13

putative high light inducible protein


Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 54.59  E-value: 6.39e-13
                        10        20        30
                ....*....|....*....|....*....|....*
gi 499445287  1 MTPEAERFNGWAAMLGFVAAVGAYVTTGQIIPGWF 35
Cdd:PHA02337  1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 2-35 2.55e-05

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 36.07  E-value: 2.55e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 499445287  2 TPEAERFNGWAAMLGFVAAVGAYVTTGQIIPGWF 35
Cdd:COG5743  26 TPYAERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
PLN00014 PLN00014
light-harvesting-like protein 3; Provisional
 3-20 1.15e-03

light-harvesting-like protein 3; Provisional


Pssm-ID: 177653 [Multi-domain]  Cd Length: 250  Bit Score: 33.29  E-value: 1.15e-03
                         10
                 ....*....|....*...
gi 499445287   3 PEAERFNGWAAMLGFVAA 20
Cdd:PLN00014 160 PEAELLNGRAAMVGFFMA 177
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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