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Conserved domains on  [gi|499470903|ref|WP_011157543|]
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AraC family transcriptional regulator [Rhodopseudomonas palustris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlxA super family cl34854
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 216-335 9.76e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


The actual alignment was detected with superfamily member COG4977:

Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 101.77  E-value: 9.76e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 216 MSEAAAAGRRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGADpaLSV 295
Cdd:COG4977  201 LLVPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTD--LSI 278

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 499470903 296 TSVALSCGFGNLGHFAGYYKKAFGEAPSATLSRARSPASS 335
Cdd:COG4977  279 EEIAAACGFGSASHFRRAFRRRFGVSPSAYRRRFRARAAA 318
AraC_binding_2 pfam14525
AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.
 46-205 1.15e-12

AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.


:

Pssm-ID: 434015  Cd Length: 173  Bit Score: 65.41  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903   46 DGALNAEASRCELSDIALTYGRHGTGITIDVPYNNTHSLVFAY-AGSAEARTGRLHSDIAGHRAFVASATRPVTLKYASD 124
Cdd:pfam14525  19 PDRFDARLRGVRLGGLSLGRLRYGAAVHIRPPELDDFYLLQLPlSGSAEIEQGGREVVLGPGDAVLLDPGRPYRLRWSED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903  125 FEQLILNVSqrsvttnLEALIGAPLSQPIIFKPTSNLRRTSARRLWEQLMSLVERLGRHD-GGYHQQITTELEQAIILSF 203
Cdd:pfam14525  99 CEQLVLRIP-------LRALLGRPLRRPLRFAPRLDLDSGLGALWLRLLRLLAAELAALGpALASSPLVAAQLEELLASL 171


                  ..
gi 499470903  204 LT 205
Cdd:pfam14525 172 LL 173
 
Name Accession Description Interval E-value
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 216-335 9.76e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 101.77  E-value: 9.76e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 216 MSEAAAAGRRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGADpaLSV 295
Cdd:COG4977  201 LLVPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTD--LSI 278

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 499470903 296 TSVALSCGFGNLGHFAGYYKKAFGEAPSATLSRARSPASS 335
Cdd:COG4977  279 EEIAAACGFGSASHFRRAFRRRFGVSPSAYRRRFRARAAA 318
HTH_18 pfam12833
Helix-turn-helix domain;
247-328 9.43e-24

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 92.65  E-value: 9.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903  247 LARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAgADPALSVTSVALSCGFGNLGHFAGYYKKAFGEAPSATL 326
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLL-EDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79


                  ..
gi 499470903  327 SR 328
Cdd:pfam12833  80 RR 81
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
241-326 9.48e-24

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 93.00  E-value: 9.48e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903   241 PLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLagADPALSVTSVALSCGFGNLGHFAGYYKKAFGE 320
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLL--RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGV 78


                   ....*.
gi 499470903   321 APSATL 326
Cdd:smart00342  79 TPSEYR 84
AraC_binding_2 pfam14525
AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.
 46-205 1.15e-12

AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.


Pssm-ID: 434015  Cd Length: 173  Bit Score: 65.41  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903   46 DGALNAEASRCELSDIALTYGRHGTGITIDVPYNNTHSLVFAY-AGSAEARTGRLHSDIAGHRAFVASATRPVTLKYASD 124
Cdd:pfam14525  19 PDRFDARLRGVRLGGLSLGRLRYGAAVHIRPPELDDFYLLQLPlSGSAEIEQGGREVVLGPGDAVLLDPGRPYRLRWSED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903  125 FEQLILNVSqrsvttnLEALIGAPLSQPIIFKPTSNLRRTSARRLWEQLMSLVERLGRHD-GGYHQQITTELEQAIILSF 203
Cdd:pfam14525  99 CEQLVLRIP-------LRALLGRPLRRPLRFAPRLDLDSGLGALWLRLLRLLAAELAALGpALASSPLVAAQLEELLASL 171


                  ..
gi 499470903  204 LT 205
Cdd:pfam14525 172 LL 173
ftrA PRK09393
transcriptional activator FtrA; Provisional
 220-324 1.57e-11

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 64.21  E-value: 1.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 220 AAAGRRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLagADPALSVTSVA 299
Cdd:PRK09393 213 ASRESDRLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLL--ESSALSIDQIA 290

                         90       100
                 ....*....|....*....|....*
gi 499470903 300 LSCGFGNLGHFAGYYKKAFGEAPSA 324
Cdd:PRK09393 291 ERAGFGSEESLRHHFRRRAATSPAA 315
 
Name Accession Description Interval E-value
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 216-335 9.76e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 101.77  E-value: 9.76e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 216 MSEAAAAGRRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGADpaLSV 295
Cdd:COG4977  201 LLVPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTD--LSI 278

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 499470903 296 TSVALSCGFGNLGHFAGYYKKAFGEAPSATLSRARSPASS 335
Cdd:COG4977  279 EEIAAACGFGSASHFRRAFRRRFGVSPSAYRRRFRARAAA 318
HTH_18 pfam12833
Helix-turn-helix domain;
247-328 9.43e-24

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 92.65  E-value: 9.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903  247 LARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAgADPALSVTSVALSCGFGNLGHFAGYYKKAFGEAPSATL 326
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLL-EDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79


                  ..
gi 499470903  327 SR 328
Cdd:pfam12833  80 RR 81
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
241-326 9.48e-24

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 93.00  E-value: 9.48e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903   241 PLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLagADPALSVTSVALSCGFGNLGHFAGYYKKAFGE 320
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLL--RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGV 78


                   ....*.
gi 499470903   321 APSATL 326
Cdd:smart00342  79 TPSEYR 84
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
98-333 2.81e-20

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 88.68  E-value: 2.81e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903  98 RLHSDIAGHRAFVASATRPVTLKYASDFEQLILNVSQRSVTTNLEALIGAPLSQPIIFKPTSNLRRTSARRLWEQLMSLV 177
Cdd:COG2207   25 LLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 178 ERLGRHDGGYHQQITTELEQAIILSFLTANESNYTPLLMSEAAAAGRRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRT 257
Cdd:COG2207  105 LLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRT 184

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499470903 258 LFHSFRGQFGYSPMEFVRRIRLERARQMLagADPALSVTSVALSCGFGNLGHFAGYYKKAFGEAPSATLSRARSPA 333
Cdd:COG2207  185 LSRLFKEETGTSPKQYLRELRLERAKRLL--AETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRARA 258
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 218-324 1.88e-16

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 79.33  E-value: 1.88e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 218 EAAAAGRRP------------------VHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRL 279
Cdd:COG2169   59 AAEAAGFRPckrcrpdlapgsppradlVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRL 138

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 499470903 280 ERARQMLAGadpALSVTSVALSCGFGNLGHFAGYYKKAFGEAPSA 324
Cdd:COG2169  139 LRARQLLQT---GLSVTDAAYAAGFGSLSRFYEAFKKLLGMTPSA 180
AraC_binding_2 pfam14525
AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.
 46-205 1.15e-12

AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.


Pssm-ID: 434015  Cd Length: 173  Bit Score: 65.41  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903   46 DGALNAEASRCELSDIALTYGRHGTGITIDVPYNNTHSLVFAY-AGSAEARTGRLHSDIAGHRAFVASATRPVTLKYASD 124
Cdd:pfam14525  19 PDRFDARLRGVRLGGLSLGRLRYGAAVHIRPPELDDFYLLQLPlSGSAEIEQGGREVVLGPGDAVLLDPGRPYRLRWSED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903  125 FEQLILNVSqrsvttnLEALIGAPLSQPIIFKPTSNLRRTSARRLWEQLMSLVERLGRHD-GGYHQQITTELEQAIILSF 203
Cdd:pfam14525  99 CEQLVLRIP-------LRALLGRPLRRPLRFAPRLDLDSGLGALWLRLLRLLAAELAALGpALASSPLVAAQLEELLASL 171


                  ..
gi 499470903  204 LT 205
Cdd:pfam14525 172 LL 173
ftrA PRK09393
transcriptional activator FtrA; Provisional
 220-324 1.57e-11

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 64.21  E-value: 1.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 220 AAAGRRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLagADPALSVTSVA 299
Cdd:PRK09393 213 ASRESDRLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLL--ESSALSIDQIA 290

                         90       100
                 ....*....|....*....|....*
gi 499470903 300 LSCGFGNLGHFAGYYKKAFGEAPSA 324
Cdd:PRK09393 291 ERAGFGSEESLRHHFRRRAATSPAA 315
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
171-322 1.99e-11

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 63.54  E-value: 1.99e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 171 EQLMSLVERLGRHDGGY--HQQITTELEQAIILSFLTANEsnytplLMSEAAAAGRRpVHKVADYLEAYWDQPLTVEMLA 248
Cdd:PRK13503 122 QQVRQLVAQMEQQEESNdlEAIASREILFMQLLVLLRKSS------LQENGENSDAR-LNQLLAWLEDHFAEEVNWEALA 194

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499470903 249 RVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGADPalSVTSVALSCGFGNLGHFAGYYKKAFGEAP 322
Cdd:PRK13503 195 DQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDA--SVTDIAYRCGFGDSNHFSTLFRREFSWSP 266
PRK10130 PRK10130
HTH-type transcriptional regulator EutR;
224-326 3.76e-09

HTH-type transcriptional regulator EutR;


Pssm-ID: 182258 [Multi-domain]  Cd Length: 350  Bit Score: 57.24  E-value: 3.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 224 RRPVHKVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGA-DPALSVTSVALSC 302
Cdd:PRK10130 239 RRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRELISPwSQSTTVKDAAMQW 318

                         90       100
                 ....*....|....*....|....
gi 499470903 303 GFGNLGHFAGYYKKAFGEAPSATL 326
Cdd:PRK10130 319 GFWHLGQFATDYQQLFAEKPSLTL 342
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 242-330 1.26e-07

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 52.34  E-value: 1.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 242 LTVEMLARVSGVSVRTLFHSFRGQfGYSPMEFVRRIRLERARQMLAGADPALSVTSVALSCGFGNLGHFAGYYKKAFGEA 321
Cdd:PRK09685 215 LRPEWIAGELGISVRSLYRLFAEQ-GLVVAQYIRNRRLDRCADDLRPAADDEKITSIAYKWGFSDSSHFSTAFKQRFGVS 293


                 ....*....
gi 499470903 322 PSATLSRAR 330
Cdd:PRK09685 294 PGEYRRKFR 302
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
253-324 5.75e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 47.21  E-value: 5.75e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499470903 253 VSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGADPALSvtSVALSCGFGNLGHFAGYYKKAFGEAPSA 324
Cdd:PRK13501 204 LVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRIS--DIAARCGFEDSNYFSAVFTREAGMTPRD 273
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
229-323 5.03e-05

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 44.27  E-value: 5.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 229 KVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGAdpALSVTSVALSCGFGNLG 308
Cdd:PRK13502 180 KLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHS--PLMISEISMQCGFEDSN 257

                         90
                 ....*....|....*
gi 499470903 309 HFAGYYKKAFGEAPS 323
Cdd:PRK13502 258 YFSVVFTRETGMTPS 272
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 234-275 1.01e-03

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 36.36  E-value: 1.01e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 499470903  234 LEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVR 275
Cdd:pfam00165   1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
229-323 2.02e-03

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 39.31  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 229 KVADYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGAdpALSVTSVALSCGFGNLG 308
Cdd:PRK13500 210 KLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHS--RLLISDISTECGFEDSN 287

                         90
                 ....*....|....*
gi 499470903 309 HFAGYYKKAFGEAPS 323
Cdd:PRK13500 288 YFSVVFTRETGMTPS 302
PRK10371 PRK10371
transcriptional regulator MelR;
144-322 2.33e-03

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 39.42  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 144 LIGAPLSQPIIFKPTSNLRRTSARRlweQLMSLVErLGRhdggYHQQITTELEQ-------AIILSFLTANESNYTPLLM 216
Cdd:PRK10371 103 FLSWPLDKDLINHVTHGMVIKSLAT---QQLSPFE-VRR----WQQELNSPNEQirqlaidEIGLMLKRFSLSGWEPILV 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 217 SEAAAAGRRPVHKVA--------DYLEAYWDQPLTVEMLARVSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAG 288
Cdd:PRK10371 175 NKTSRTHKNSVSRHAqfyvsqmlGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSD 254

                        170       180       190
                 ....*....|....*....|....*....|....
gi 499470903 289 ADpaLSVTSVALSCGFGNLGHFAGYYKKAFGEAP 322
Cdd:PRK10371 255 TD--KSILDIALTAGFRSSSRFYSTFGKYVGMSP 286
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
171-323 5.48e-03

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 38.03  E-value: 5.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499470903 171 EQLMSLVERLGRHDGGYHQQITTE-LEQAIILSFLTANESNYTPLlmseaaaaGRRpVHKVADYLEAYWDQPLTVEMLAR 249
Cdd:PRK10572 137 SDLFGQIEQAGQSEGRYSELLAMNlLERLLLRCMEAIPESLHPPM--------DPR-VREACQYISDHLASEFDIESVAQ 207

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499470903 250 VSGVSVRTLFHSFRGQFGYSPMEFVRRIRLERARQMLAGADpaLSVTSVALSCGFGNLGHFAGYYKKAFGEAPS 323
Cdd:PRK10572 208 HVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTR--MPIATIGRNVGYDDQLYFSRVFKKCTGASPS 279
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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