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Conserved domains on  [gi|499472589|ref|WP_011159229|]
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microcin C ABC transporter permease YejB [Rhodopseudomonas palustris]

Protein Classification

microcin C ABC transporter permease YejB( domain architecture ID 11467933)

microcin C ABC transporter permease YejB is the transmembrane (TM) subunit of the ABC transporter YejABEF that has been shown in Brucella melitensis to be required for resistance to antimicrobial peptides and virulence

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0042884
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-369 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


:

Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 696.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAQISGADTGASSRISGssggdfGARPQAAGAAEAVNSKYRG 80
Cdd:COG4174    1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTGGGATGRISG------GGGDAGGGAAAGGGSKYRG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:COG4174   75 ARGLDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIR 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPLRGLTSDGWSQFPWYWKILDYFWHLTLPLISMAL 240
Cdd:COG4174  155 KAVRDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVI 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:COG4174  235 GGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLL 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRIDFEARDV 369
Cdd:COG4174  315 GFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEAREV 363
 
Name Accession Description Interval E-value
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-369 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 696.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAQISGADTGASSRISGssggdfGARPQAAGAAEAVNSKYRG 80
Cdd:COG4174    1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTGGGATGRISG------GGGDAGGGAAAGGGSKYRG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:COG4174   75 ARGLDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIR 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPLRGLTSDGWSQFPWYWKILDYFWHLTLPLISMAL 240
Cdd:COG4174  155 KAVRDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVI 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:COG4174  235 GGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLL 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRIDFEARDV 369
Cdd:COG4174  315 GFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEAREV 363
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-367 1.21e-177

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 497.73  E-value: 1.21e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAQISGADTGASSRISGSsggDFGARPQAAGAAEAVNSKYRG 80
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQAGGLPGAGGE---GVRASHAQTGVGNISDSNYRG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:PRK15133  78 GRGLDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIR 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPLRGLTSDGWSQFPWYWKILDYFWHLTLPLISMAL 240
Cdd:PRK15133 158 KAVRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVI 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:PRK15133 238 GGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLL 317

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRIDFEAR 367
Cdd:PRK15133 318 GYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-362 9.79e-50

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 169.56  E-value: 9.79e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589    1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAqisgadtgassrisgssggdfgarpqaagAAEAVNSkyrg 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLR-----------------------------LSHIPPT---- 47

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   81 aqgldPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:TIGR02789  48 -----DEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGIL 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAggSFFSWFPLRGltSDGWSqfpwywkildyfwHLTLPLISMAL 240
Cdd:TIGR02789 123 AARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS--VYLNLLPTNG--AGTWQ-------------HLVLPAVTLAL 185

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFpGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:TIGR02789 186 MSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITAL-GMHIGELLGGTFVIENIFSWPGVGRY 264

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 499472589  321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:TIGR02789 265 AISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 154-362 4.24e-21

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 89.28  E-value: 4.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  154 SIPLGIRKAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIilfaggsffswfplrgltsdgwsqfpwYWKILDYFWHLTL 233
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLV---------------------------VIAILSILGHGIL 53

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  234 PLISMALGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFsGALLIETIFS 313
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALG-GAVLLEFLGS 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 499472589  314 LDGLGLLGFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:pfam00528 133 WPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 136-353 1.37e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 59.98  E-value: 1.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 136 LPVSMSLGIWMTLLTYLISIPLGIRkAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPlrgltsdgw 215
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 216 sqfpwywkildyfwHLTLPLISMALGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPG 295
Cdd:cd06261   71 --------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL 136

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499472589 296 AFIHAfFSGALLIETIFSLDGLGLLGFESVLNRdypVVFGTLFIFSLVGLVVNLISDL 353
Cdd:cd06261  137 AFARA-LGEFALVSFLGGGEAPGPGTGLLLIFA---ILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-369 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 696.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAQISGADTGASSRISGssggdfGARPQAAGAAEAVNSKYRG 80
Cdd:COG4174    1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTGGGATGRISG------GGGDAGGGAAAGGGSKYRG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:COG4174   75 ARGLDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIR 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPLRGLTSDGWSQFPWYWKILDYFWHLTLPLISMAL 240
Cdd:COG4174  155 KAVRDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVI 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:COG4174  235 GGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLL 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRIDFEARDV 369
Cdd:COG4174  315 GFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEAREV 363
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-367 1.21e-177

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 497.73  E-value: 1.21e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAQISGADTGASSRISGSsggDFGARPQAAGAAEAVNSKYRG 80
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQAGGLPGAGGE---GVRASHAQTGVGNISDSNYRG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:PRK15133  78 GRGLDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIR 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPLRGLTSDGWSQFPWYWKILDYFWHLTLPLISMAL 240
Cdd:PRK15133 158 KAVRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVI 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:PRK15133 238 GGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLL 317

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRIDFEAR 367
Cdd:PRK15133 318 GYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-362 4.19e-96

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 288.50  E-value: 4.19e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIaqisgadtgassrisgssggdfgarpqaagaaeavnskyrg 80
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALL----------------------------------------- 39

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:COG0601   40 GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGIL 119

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGsfFSWFPLRGLTSDGWSqfpwywkILDYFWHLTLPLISMAL 240
Cdd:COG0601  120 AALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVK--LGWLPVSGRVSPWED-------FLDALRHLILPALTLAL 190

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIhAFFSGALLIETIFSLDGLGLL 320
Cdd:COG0601  191 GSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLG-GLLGGAVVVETVFSWPGLGRL 269

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:COG0601  270 LVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRI 311
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-362 9.79e-50

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 169.56  E-value: 9.79e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589    1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAqisgadtgassrisgssggdfgarpqaagAAEAVNSkyrg 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLR-----------------------------LSHIPPT---- 47

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   81 aqgldPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:TIGR02789  48 -----DEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGIL 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAggSFFSWFPLRGltSDGWSqfpwywkildyfwHLTLPLISMAL 240
Cdd:TIGR02789 123 AARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS--VYLNLLPTNG--AGTWQ-------------HLVLPAVTLAL 185

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFpGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:TIGR02789 186 MSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITAL-GMHIGELLGGTFVIENIFSWPGVGRY 264

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 499472589  321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:TIGR02789 265 AISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-362 4.38e-41

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 146.77  E-value: 4.38e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVERVIAQISGADTgassrisgssggdfgarpqaagaaeavnskyrg 80
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPPT--------------------------------- 47

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 aqgldPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:PRK10352  48 -----PEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIW 122

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAggSFFSWFPLRGltSDGWSqfpwywkildyfwHLTLPLISMAL 240
Cdd:PRK10352 123 AARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS--VYLQWLPAMG--YGGWQ-------------HIILPAVSIAF 185

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 241 GAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFpGAFIHAFFSGALLIETIFSLDGLGLL 320
Cdd:PRK10352 186 MSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAV-GMHIGELIGGTMIIENIFAWPGVGRY 264

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 499472589 321 GFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:PRK10352 265 AVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-362 1.78e-40

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 144.82  E-value: 1.78e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPverviaqisgadtgassrisgssggdfgarpqaagaaeavnskYRG 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP-------------------------------------------FTG 37

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSY-FRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGI 159
Cdd:PRK09471  38 ERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFkYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGV 117

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 160 RKAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAggSFFSWFPlrgltSDGWSQFPWYWKILdyfwhltlPLISMA 239
Cdd:PRK09471 118 IAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFA--ITLHWLP-----GGGWNGGALKFMIL--------PMVALS 182

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 240 LGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIhAFFSGALLIETIFSLDGLGL 319
Cdd:PRK09471 183 LAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFV-GIITGSMVIETIFGLPGIGQ 261

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 499472589 320 LGFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:PRK09471 262 LFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKI 304
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-362 1.05e-34

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 130.32  E-value: 1.05e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVeRVIAqisgadtgassrisgssggdfgarpqaagaaeavnskyrG 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPV-MIMA---------------------------------------G 40

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 AQGLDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIR 160
Cdd:PRK10914  41 ERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVL 120

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 161 KAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAggSFFSWFPLRGLTSD-----GWSQFPWYWKILDYFW------ 229
Cdd:PRK10914 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVS--VHWNLTPVSGRVSDmvfldDSNPLTGFMLIDTAIWgedgnf 198

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 230 -----HLTLPLISMALGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFpGAFIHAFFSG 304
Cdd:PRK10914 199 idavaHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVI-GLQVGTLLAG 277

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499472589 305 ALLIETIFSLDGLGLLGFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:PRK10914 278 AILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-365 1.05e-32

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 124.06  E-value: 1.05e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589   1 MAAYIARRILLMFPTLLGILFVSFVVVQFAPGGPVeRVIAQisgadtgassrisgssggdfgarPQAagaaeavnskyrg 80
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPA-RLAAG-----------------------PEA------------- 43

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  81 aqglDPEFVKSLEKQFGFDKPAPERFAIMLWNFARFDFGKSyfrdvsvlqlIKEKLPVSMSLG------IWMTLLTY--- 151
Cdd:PRK15081  44 ----DAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS----------MVSRRPVSEEIAsrfmptLWLTITSMvwa 109

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 152 -LISIPLGIRKAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAggSFFSWFPLRGltSDGWSqfpwywkildyfwH 230
Cdd:PRK15081 110 vIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFS--VELGWLPTVG--ADSWQ-------------H 172

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 231 LTLPLISMALGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIA--GFPGAFIhafFSGALLI 308
Cdd:PRK15081 173 YILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTmmGLQFGFL---LGGSIVV 249

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499472589 309 ETIFSLDGLGLLGFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRIDFE 365
Cdd:PRK15081 250 EKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
110-360 3.86e-31

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 120.33  E-value: 3.86e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 110 LWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIRKAVQDGSKFDTWTSAVIIVGFAIPGFLFA 189
Cdd:COG4168   48 LQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 190 ILLIILFAggSFFSWFPLRGLTS--------------DGW-SQFPWYWKIL-DYFWHLTLPLISMALGAFATMTLLTKNS 253
Cdd:COG4168  128 LLLILFFS--LNLGWLPVSGRYNllyeippvtgfaliDAWlSDSPYRLKAIqSALQHLILPTLVLAVAPTTEVIRLTRQS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 254 FLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIhAFFSGALLIETIFSLDGLGLLGFESVLNRDYPVV 333
Cdd:COG4168  206 TEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFS-TMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAI 284

                        250       260
                 ....*....|....*....|....*..
gi 499472589 334 FGTLFIFSLVGLVVNLISDLTYMWIDP 360
Cdd:COG4168  285 SAGVIVIGTFVIIVNILSDILGALLNP 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 154-362 4.24e-21

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 89.28  E-value: 4.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  154 SIPLGIRKAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIilfaggsffswfplrgltsdgwsqfpwYWKILDYFWHLTL 233
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLV---------------------------VIAILSILGHGIL 53

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589  234 PLISMALGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPGAFIHAFFsGALLIETIFS 313
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALG-GAVLLEFLGS 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 499472589  314 LDGLGLLGFESVLNRDYPVVFGTLFIFSLVGLVVNLISDLTYMWIDPRI 362
Cdd:pfam00528 133 WPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
PRK15110 PRK15110
peptide ABC transporter permease SapB;
110-353 6.05e-19

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 86.28  E-value: 6.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 110 LWNFARFDFGKSYFRDVSVLQLIKEKLPVSMSLGIWMTLLTYLISIPLGIRKAVQDGSKFDTWTSAVIIVGFAIPGFLFA 189
Cdd:PRK15110  48 FNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 190 ILLIILFA--------GGSFFSWFPLRGLTS----DGW-SQFPWYWK-ILDYFWHLTLPLISMALGAFATMTLLTKNSFL 255
Cdd:PRK15110 128 LLLTLFFSltlgwlpvSGRFDLLYEVKPVTGfaliDAWlSDSPWRDEmIMSAIRHMILPVITLAVAPTTEVIRLMRISTI 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 256 DEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFpGAFIHAFFSGALLIETIFSLDGLGLLGFESVLNRDYPVV-F 334
Cdd:PRK15110 208 EVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRL-GLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAIsA 286

                        250
                 ....*....|....*....
gi 499472589 335 GTLFIFSLVgLVVNLISDL 353
Cdd:PRK15110 287 GVMVVGSLV-IIVNVLSDI 304
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 136-353 1.37e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 59.98  E-value: 1.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 136 LPVSMSLGIWMTLLTYLISIPLGIRkAVQDGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGSFFSWFPlrgltsdgw 215
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 216 sqfpwywkildyfwHLTLPLISMALGAFATMTLLTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAMLIVIAGFPG 295
Cdd:cd06261   71 --------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL 136

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499472589 296 AFIHAfFSGALLIETIFSLDGLGLLGFESVLNRdypVVFGTLFIFSLVGLVVNLISDL 353
Cdd:cd06261  137 AFARA-LGEFALVSFLGGGEAPGPGTGLLLIFA---ILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 138-352 6.72e-08

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 53.19  E-value: 6.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 138 VSMSLGIWMTLLTYLISIPLGIRKAVQdGSKFDTWTSAVIIVGFAIPGFLFAILLIILFAGGsffswfplrgltsdgwsq 217
Cdd:COG1173   80 ISLLVGLLAVLIALVIGVLLGLLAGYF-GGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPG------------------ 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499472589 218 fpwywkildyfwhltLPLISMALGAFATMTL--LTKNSFLDEIRKQYVMTARAKGCSETQVLYGHVFRNAM--LIVIAGF 293
Cdd:COG1173  141 ---------------LLNVILALGLTGWPGYarLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLppLIVQATL 205

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499472589 294 pgafihaFFSGALLIETIFSLDGLGL------------LGFESVLNRDYPVVFGTLFIFSLVgLVVNLISD 352
Cdd:COG1173  206 -------GIASAILAEAGLSFLGLGVqpptpswgtmlsEGRNYLLTAPWLALFPGLAIVLTV-LAFNLLGD 268
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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