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Concise Results
Standard Results
Full Results
exodeoxyribonuclease V subunit gamma [Aliivibrio fischeri]
Protein Classification
exodeoxyribonuclease V subunit gamma ( domain architecture ID 11485181 )
exodeoxyribonuclease V subunit gamma (RecC) is a component of the heterotrimeric RecBCD helicase/nuclease complex that is essential for double-strand DNA break repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1136
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 1896.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1 MFTVYHSNQLDVLK S L V V E LI RLN PLD N PFE Q E Q ILVQSPGM S QWL KI ELA KEL GIAAN LT FPLPATFIWD L FT Q VL D D V 80
Cdd:PRK11069 1 MFTVYHSNQLDVLK A L M V F LI ERE PLD D PFE P E M ILVQSPGM A QWL QM ELA QKF GIAAN ID FPLPATFIWD M FT R VL P D I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 81 PK R SAF H KEAMTWK IV TLLP E LL KQE EF A PL QR YL EN D KNQL K CY QLAA K IAD I FDQYLV F RPEW IQQ WEAG EE V VE L EG 160
Cdd:PRK11069 81 PK E SAF N KEAMTWK LM TLLP Q LL ERP EF T PL RH YL TD D EDKR K LF QLAA R IAD L FDQYLV Y RPEW LAS WEAG QL V EG L GD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 161 EH PWQ PT LW R AL YDQ T LA LG HSPY HRAN MFEH FIETL DNYLQT gtl SK G M PKR L F VV GI TS LPP R YL D AL A ALG Q HID V H 240
Cdd:PRK11069 161 AQ PWQ AP LW K AL VEY T HQ LG QPRW HRAN LYQR FIETL ESATTC --- PP G L PKR V F IC GI SA LPP V YL Q AL Q ALG K HID I H 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 241 L M FTNPCRYYWG E I R D RKY LA R L E AR N R LQ v KWL D DHSEHIG D T E QLKGSIEANF E DE lhtse VGN S LLASWGKLGRDNL 320
Cdd:PRK11069 238 L L FTNPCRYYWG D I Q D PAF LA K L L AR Q R RH - SFE D RELPLFR D S E NAEQLFNSDG E QD ----- VGN P LLASWGKLGRDNL 311
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 321 C LLS EM E A - QE I DAFVD VGN DNLLH S IQ S DIL N LE ERS ---- R D DVLDN S Q HK Q P ISS DDRS ILL H S CHSP M REVEVLHD 395
Cdd:PRK11069 312 Y LLS QL E S s QE L DAFVD IEP DNLLH N IQ A DIL E LE DHA vigv N D EEFSR S D HK R P LDP DDRS LSF H V CHSP Q REVEVLHD 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 396 Q LL D M FAS DP D L K PRDIIVMVADI NV YS AA IQAVFGNA AFD RY I PFAISD QS A E Q EN PVL L AF MT L MA LP EN R CGLSEL L 475
Cdd:PRK11069 392 R LL A M LEA DP T L T PRDIIVMVADI DS YS PF IQAVFGNA PAE RY L PFAISD RR A R Q AH PVL Q AF IS L LS LP DS R FTAEDV L 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 476 T LLEVPA VMS RF KFNA E QFEIVKR W A EE T GIRWGLD NSTSAQFD LP EHN Q NS W L FG IQ RMLLGYAME QG AG LFE G MAS Y E 555
Cdd:PRK11069 472 A LLEVPA LAA RF AITE E GLRYLRQ W V EE S GIRWGLD DDNVRELE LP ATG Q HT W R FG LT RMLLGYAME SA AG EWQ G VLP Y D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 556 QVQ G MN AE I AG N LA QFID QL LTYQII L G QP HAITK W RTTIN QL M DDF LDVEL E G E LVVKS I RD Q L Q KLE E NLE DA GFDAP 635
Cdd:PRK11069 552 ESS G LI AE L AG H LA SLLM QL NIWRRG L A QP RPLEE W LPVCR QL L DDF FLPDA E T E AALAL I EQ Q W Q AII E EGL DA QYGDA 631
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 636 ISAPIINNY L KNN L SGGKA SQRFLAG Q VNFCTLMPMRSIPF D VVCLLGM T DG S YPRT M P VE GFDLM QKRM K P GDRSRRDD 715
Cdd:PRK11069 632 VPLSLLRDE L AQR L DQERI SQRFLAG P VNFCTLMPMRSIPF K VVCLLGM N DG V YPRT L P PL GFDLM SQKP K R GDRSRRDD 711
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 716 DRYLFLEAL Q SA NKAF Y L SYIGRSI R DN T E KA PSVLVSELLEY CQ Q G YCL E GD NE LN PEA SA K R LVKQ LT IE H PLV P YSQ 795
Cdd:PRK11069 712 DRYLFLEAL L SA QQQL Y I SYIGRSI Q DN S E RF PSVLVSELLEY IG Q S YCL P GD EA LN CDE SA A R VKAH LT CL H TRM P FDP 791
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 796 Q S F IGD - NI SYA S EWLP T A KLE G A A A P E F QTAPL vy APETK EL E L T ELQRFWR L PV AY FF N R G LKV F F ESV ES RVE D D EP 874
Cdd:PRK11069 792 Q N F QPG e QQ SYA R EWLP A A SQQ G K A H P D F VQPLP -- FEPPE EL T L D ELQRFWR H PV RA FF Q R R LKV N F RTE ES ELP D E EP 869
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 875 FT I DG RTG Y GMKSD LL ED L LAY DD PNH vsqisrd FYQQ Q K A Q GKLP I G S FGEI TADKEVNTVKD L VAHIQP l TTL P LDDQ 954
Cdd:PRK11069 870 FT L DG LSR Y QLNQQ LL NA L IEQ DD AER ------- LFRR Q R A A GKLP Y G A FGEI FWETQCQEMQQ L ADRVRA - CRQ P GQSL 941
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 955 E VR L RF afph GEME L Q GWL K Q RYQA G M LR Y R G G KIRSHEI L AT W ID HL CL CA M G QQQLTH LFG - TDAIYH F GTIEK E K A Y 1033
Cdd:PRK11069 942 E ID L TL ---- NGVQ L T GWL P Q VQPD G L LR W R P G LLSVADG L QL W LE HL VY CA S G GNGESR LFG r KEGEWR F PPLAA E Q A K 1017
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1034 Q E L ETILSL Y IS G NC APL AY LPK AAL A G L E A HV D KK - GVWN DDEET H QKA L KK MADEYN G TR - FA GE NSND Y VI R M W PEW 1111
Cdd:PRK11069 1018 Q Y L SQLIEG Y RE G MS APL LL LPK SGG A W L K A CY D RE n DAIL DDEET Q QKA R KK LLQAWE G NM m VR GE GDDI Y IQ R L W RQL 1097
1130 1140
....*....|....*....|....*
gi 499580551 1112 N DE FGQV I FDN AQ KV L RNALLHSEK 1136
Cdd:PRK11069 1098 D DE TLEA I IEQ AQ RY L LPLFRFNQS 1122
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1136
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 1896.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1 MFTVYHSNQLDVLK S L V V E LI RLN PLD N PFE Q E Q ILVQSPGM S QWL KI ELA KEL GIAAN LT FPLPATFIWD L FT Q VL D D V 80
Cdd:PRK11069 1 MFTVYHSNQLDVLK A L M V F LI ERE PLD D PFE P E M ILVQSPGM A QWL QM ELA QKF GIAAN ID FPLPATFIWD M FT R VL P D I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 81 PK R SAF H KEAMTWK IV TLLP E LL KQE EF A PL QR YL EN D KNQL K CY QLAA K IAD I FDQYLV F RPEW IQQ WEAG EE V VE L EG 160
Cdd:PRK11069 81 PK E SAF N KEAMTWK LM TLLP Q LL ERP EF T PL RH YL TD D EDKR K LF QLAA R IAD L FDQYLV Y RPEW LAS WEAG QL V EG L GD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 161 EH PWQ PT LW R AL YDQ T LA LG HSPY HRAN MFEH FIETL DNYLQT gtl SK G M PKR L F VV GI TS LPP R YL D AL A ALG Q HID V H 240
Cdd:PRK11069 161 AQ PWQ AP LW K AL VEY T HQ LG QPRW HRAN LYQR FIETL ESATTC --- PP G L PKR V F IC GI SA LPP V YL Q AL Q ALG K HID I H 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 241 L M FTNPCRYYWG E I R D RKY LA R L E AR N R LQ v KWL D DHSEHIG D T E QLKGSIEANF E DE lhtse VGN S LLASWGKLGRDNL 320
Cdd:PRK11069 238 L L FTNPCRYYWG D I Q D PAF LA K L L AR Q R RH - SFE D RELPLFR D S E NAEQLFNSDG E QD ----- VGN P LLASWGKLGRDNL 311
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 321 C LLS EM E A - QE I DAFVD VGN DNLLH S IQ S DIL N LE ERS ---- R D DVLDN S Q HK Q P ISS DDRS ILL H S CHSP M REVEVLHD 395
Cdd:PRK11069 312 Y LLS QL E S s QE L DAFVD IEP DNLLH N IQ A DIL E LE DHA vigv N D EEFSR S D HK R P LDP DDRS LSF H V CHSP Q REVEVLHD 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 396 Q LL D M FAS DP D L K PRDIIVMVADI NV YS AA IQAVFGNA AFD RY I PFAISD QS A E Q EN PVL L AF MT L MA LP EN R CGLSEL L 475
Cdd:PRK11069 392 R LL A M LEA DP T L T PRDIIVMVADI DS YS PF IQAVFGNA PAE RY L PFAISD RR A R Q AH PVL Q AF IS L LS LP DS R FTAEDV L 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 476 T LLEVPA VMS RF KFNA E QFEIVKR W A EE T GIRWGLD NSTSAQFD LP EHN Q NS W L FG IQ RMLLGYAME QG AG LFE G MAS Y E 555
Cdd:PRK11069 472 A LLEVPA LAA RF AITE E GLRYLRQ W V EE S GIRWGLD DDNVRELE LP ATG Q HT W R FG LT RMLLGYAME SA AG EWQ G VLP Y D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 556 QVQ G MN AE I AG N LA QFID QL LTYQII L G QP HAITK W RTTIN QL M DDF LDVEL E G E LVVKS I RD Q L Q KLE E NLE DA GFDAP 635
Cdd:PRK11069 552 ESS G LI AE L AG H LA SLLM QL NIWRRG L A QP RPLEE W LPVCR QL L DDF FLPDA E T E AALAL I EQ Q W Q AII E EGL DA QYGDA 631
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 636 ISAPIINNY L KNN L SGGKA SQRFLAG Q VNFCTLMPMRSIPF D VVCLLGM T DG S YPRT M P VE GFDLM QKRM K P GDRSRRDD 715
Cdd:PRK11069 632 VPLSLLRDE L AQR L DQERI SQRFLAG P VNFCTLMPMRSIPF K VVCLLGM N DG V YPRT L P PL GFDLM SQKP K R GDRSRRDD 711
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 716 DRYLFLEAL Q SA NKAF Y L SYIGRSI R DN T E KA PSVLVSELLEY CQ Q G YCL E GD NE LN PEA SA K R LVKQ LT IE H PLV P YSQ 795
Cdd:PRK11069 712 DRYLFLEAL L SA QQQL Y I SYIGRSI Q DN S E RF PSVLVSELLEY IG Q S YCL P GD EA LN CDE SA A R VKAH LT CL H TRM P FDP 791
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 796 Q S F IGD - NI SYA S EWLP T A KLE G A A A P E F QTAPL vy APETK EL E L T ELQRFWR L PV AY FF N R G LKV F F ESV ES RVE D D EP 874
Cdd:PRK11069 792 Q N F QPG e QQ SYA R EWLP A A SQQ G K A H P D F VQPLP -- FEPPE EL T L D ELQRFWR H PV RA FF Q R R LKV N F RTE ES ELP D E EP 869
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 875 FT I DG RTG Y GMKSD LL ED L LAY DD PNH vsqisrd FYQQ Q K A Q GKLP I G S FGEI TADKEVNTVKD L VAHIQP l TTL P LDDQ 954
Cdd:PRK11069 870 FT L DG LSR Y QLNQQ LL NA L IEQ DD AER ------- LFRR Q R A A GKLP Y G A FGEI FWETQCQEMQQ L ADRVRA - CRQ P GQSL 941
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 955 E VR L RF afph GEME L Q GWL K Q RYQA G M LR Y R G G KIRSHEI L AT W ID HL CL CA M G QQQLTH LFG - TDAIYH F GTIEK E K A Y 1033
Cdd:PRK11069 942 E ID L TL ---- NGVQ L T GWL P Q VQPD G L LR W R P G LLSVADG L QL W LE HL VY CA S G GNGESR LFG r KEGEWR F PPLAA E Q A K 1017
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1034 Q E L ETILSL Y IS G NC APL AY LPK AAL A G L E A HV D KK - GVWN DDEET H QKA L KK MADEYN G TR - FA GE NSND Y VI R M W PEW 1111
Cdd:PRK11069 1018 Q Y L SQLIEG Y RE G MS APL LL LPK SGG A W L K A CY D RE n DAIL DDEET Q QKA R KK LLQAWE G NM m VR GE GDDI Y IQ R L W RQL 1097
1130 1140
....*....|....*....|....*
gi 499580551 1112 N DE FGQV I FDN AQ KV L RNALLHSEK 1136
Cdd:PRK11069 1098 D DE TLEA I IEQ AQ RY L LPLFRFNQS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1138
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1404.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1 M FTV YHSN Q L D VL KS L VVE L IRLN PL DN PF EQ E Q ILVQSPGM SQ WL KI ELA KEL GIAAN LT FPLPA T FIW D LF TQ VL D DV 80
Cdd:COG1330 1 M LHL YHSN R L E VL AD L LAA L LAAQ PL AD PF AP E V ILVQSPGM AR WL QL ELA ERF GIAAN IE FPLPA S FIW Q LF RA VL P DV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 81 P KR S A F H KEA M TW KIVT LLPELL KQE EFAPL Q RYL EN D KN Q L K C YQLA AKI AD I FDQYLV F RP E W IQQ WEA - GEEVVE L E 159
Cdd:COG1330 81 P EE S P F S KEA L TW RLMR LLPELL DEP EFAPL A RYL GD D ED Q R K R YQLA GRL AD L FDQYLV Y RP D W LAA WEA g EDVDGP L P 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 160 GEHP WQ PT LWRAL YDQ T L AL g H S PY HRAN MFEH FI ET L DN ylq TGTLSK G M P K R L FV V GI TS LPP R YL DA L A AL GQ HIDV 239
Cdd:COG1330 161 DDQA WQ AA LWRAL VAE T G AL - Q S AW HRAN LYQR FI AA L RS --- GEPRPA G L P E R V FV F GI SA LPP V YL EV L Q AL AR HIDV 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 240 HL MFT NPCR Y YWG E I R D RKY LARL E AR nrlqvkwlddhsehigdteqlkgsieanf E D ELHTS EVGN S LLASWGK L GRD N 319
Cdd:COG1330 237 HL FLL NPCR E YWG D I V D ARE LARL A AR ----------------------------- S D DDDLL EVGN P LLASWGK Q GRD F 287
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 320 L C LL S E M E A -- QEIDAFVD VGN D N LLH SI Q S DIL N L EERSRD dvldns QH K Q P ISS DDRS ILL H S CHSP M REVEVLHDQL 397
Cdd:COG1330 288 L D LL A E L E D es QEIDAFVD PPP D T LLH QL Q A DIL E L RPPAEG ------ AS K R P LAP DDRS LQV H A CHSP L REVEVLHDQL 361
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 398 L DM FA S DP D L K PRDI I VMV A DI NV Y SAA IQAVFG N A AF D - R Y IPF A I S D Q SA E QENP V L L AF MT L MA LP EN R CGL SE L L T 476
Cdd:COG1330 362 L AL FA D DP T L T PRDI L VMV P DI EA Y APY IQAVFG Q A PP D p R R IPF S I A D R SA R QENP L L A AF LQ L LD LP QS R FTA SE V L D 441
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 477 LLEVPAV MS RF KFNAEQF E IVK RW AE E T GIRWGLD NSTS A QFD LP EHN QN S W L FG IQ R M LLGYAM EQG AGL FE G MAS Y EQ 556
Cdd:COG1330 442 LLEVPAV AR RF GLDEDDL E RLR RW VA E A GIRWGLD AAHR A RLG LP ATE QN T W R FG LD R L LLGYAM GEE AGL WQ G ILP Y DE 521
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 557 V Q G MN AE IA G N LA Q F I D Q L LTYQII L GQ P HAITK W RTTINQ L M DDF LDVEL E G E LVVKSI R DQ L QK L E E NLED AG F D A P I 636
Cdd:COG1330 522 V E G LD AE LL G R LA E F L D R L AAWRQR L AE P RTLAE W LERLRA L L DDF FAPDE E D E WALAQL R RA L AE L A E QAAE AG Y D E P L 601
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 637 SAPIINNY L KNN L S G GKAS QRFLAG Q V N FCTLMPMRSIPF D VVCLLGM T DG SY PR TM P VE GFDLM QKRMKP GDRSRRDDD 716
Cdd:COG1330 602 PLAVVRDA L AAR L D G RPTR QRFLAG G V T FCTLMPMRSIPF R VVCLLGM N DG DF PR QQ P PL GFDLM ARHPRR GDRSRRDDD 681
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 717 RYLFLEAL Q SA NKAF Y L SY I GRSIRDN T E KA PSVLVSELL E Y CQ QG YC L E GD nelnpea S AK RL VKQ L TIE HPL V P Y S QQ 796
Cdd:COG1330 682 RYLFLEAL L SA RERL Y I SY V GRSIRDN S E RP PSVLVSELL D Y LA QG FA L P GD ------- S GE RL RAH L VVR HPL Q P F S PR 754
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 797 S F IGDN --- I SY AS EWL PT A KLE G AA --- AP E F QTA PL VYAPETK E LE L TE L Q RF W R L PV AY F FNRG L K V FFESV E SRV E 870
Cdd:COG1330 755 Y F EPGS prl F SY DA EWL AA A RAL G QP rap AP P F LAQ PL PPPEPEE E VT L DD L L RF L R H PV RA F LRQR L G V RLPEE E EEL E 834
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 871 D D EPF TI DG RTG Y GMKSD LLE D LLA Y DDP N hvsqisr DFYQQQK A Q G K LP I G S FGE ITADKEVNT V KD L V A HIQ PL TT - L 949
Cdd:COG1330 835 D A EPF EL DG LER Y QLRQR LLE A LLA G DDP A ------- ELFARLR A R G L LP P G A FGE LLLERLLEE V AA L A A ALR PL LA g P 907
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 950 PL DDQE V R L RF afph G EME L Q GWL KQRYQA G ML R Y R G GK IRSHEI L AT W ID HL C LCA M G QQQL - TH L F G T D AIYHFGTIE 1028
Cdd:COG1330 908 PL ESLD V D L DL ---- G GVR L T GWL DGVRGD G LV R W R P GK LKAKDL L RL W LE HL A LCA A G PPGG e SV L V G R D GVWRLAPLP 983
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1029 K E K A YQE L ETI L S LY IS G NCA PL AYL PK A A L A GL EA H vdkkgvwn D D EE T HQ KAL KKMADEYN G TR F - A GE NSND Y VI R M 1107
Cdd:COG1330 984 P E E A RAL L AEL L A LY RQ G LRQ PL PLF PK T A W A WA EA C -------- Y D GK T QE KAL EAARQAWE G GD F v P GE GDDP Y LQ R V 1055
1130 1140 1150
....*....|....*....|....*....|..
gi 499580551 1108 WPEWND - E FGQVIFDN A QKV L RNA L L H S E KEK 1138
Cdd:COG1330 1056 FRGLDP l E LDERFAAL A ERL L LPL L A H L E AAE 1087
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1103
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1117.13
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 2 F TV YHSN Q LDVL KS L VVE L I R LN PLD N PFE Q E Q ILVQSPGM S QWL KIE LA KE LG I AANL T FPLPA T FIW DL F TQ VL DDV P 81
Cdd:TIGR01450 1 F RL YHSN R LDVL AA L LAA L L R DP PLD D PFE P E L ILVQSPGM A QWL QMT LA ED LG V AANL E FPLPA S FIW QM F VA VL PEI P 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 82 KR SAF H KE A M T W KIVT LLP E LL KQE EF AP L QR YL EN D KNQL K C YQLA AKI AD I FDQYLV F RP E W IQQ WEAG EE V VELEGE 161
Cdd:TIGR01450 81 EE SAF N KE V M S W RLMA LLP A LL ERP EF RT L RH YL AD D SDLR K R YQLA ERL AD L FDQYLV Y RP D W LAA WEAG DD V EGPGDL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 162 HP WQ PT LWRAL YDQTL A L G H s P Y HRAN MFEH FIE T L DNYLQT gtl SK G M P K RLF VV GI TS LPP R YL D ALAAL G QH I DVHL 241
Cdd:TIGR01450 161 QA WQ AI LWRAL VAGVG A D G Q - P T HRAN LHQR FIE R L RSGTTH --- PP G L P A RLF IF GI SA LPP T YL Q ALAAL A QH C DVHL 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 242 MF TNPCR Y YWG E I R D R KYLARL EA R N R LQVKW L DDH sehi G D T E QL kgsieanfedelhts EV G NS LLASWGKLGRD NLC 321
Cdd:TIGR01450 237 FL TNPCR E YWG D I I D F KYLARL LT R H R GADPL L PLR ---- Q D L E EH --------------- AA G HP LLASWGKLGRD FIY 297
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 322 LL S E M E A - QEIDAF VDVGN D N LLH SI Q S DIL N LE E R SR D D vldnsqh K Q P ISSD DRSI LL H S CHSP M REVEVLHD Q LL DM 400
Cdd:TIGR01450 298 LL P E L E Q s QEIDAF LEATP D T LLH QL Q A DIL H LE P R PV D A ------- K L P SAPL DRSI QF H A CHSP L REVEVLHD R LL AL 370
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 401 FAS DP D L K PRDIIVMV A DI NV Y SAA I Q AVFG N A AF D - R YI P FAI SD QSAE Q EN P V L L AF MT L MA LPE N R CGL SE L L T LL E 479
Cdd:TIGR01450 371 LEE DP T L Q PRDIIVMV P DI DS Y APY I E AVFG Q A PV D a R FL P YSL SD RRLR Q RE P L L E AF IH L LD LPE S R FTA SE I L A LL D 450
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 480 V P A V MS RF KFNAEQF E IVK RW AE E T GIRWGLD NSTSAQFD LP EHN Q - N S W L FG IQ RMLLGYAM EQG AG LFE G MAS Y EQ V Q 558
Cdd:TIGR01450 451 I P P V RA RF GIDEDDL E TLR RW VA E A GIRWGLD AEHRRELG LP ATD Q h N T W R FG LE RMLLGYAM GED AG IWQ G VLP Y DD V G 530
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 559 G MN AE I AG N LA Q F IDQ L LTYQII L G QP HAITK W RTTINQ L M D DFLD V ELEG EL VVKSIRDQLQKLEENLED A G F DA P ISA 638
Cdd:TIGR01450 531 G LQ AE L AG R LA E F LER L SHWRRG L A QP RPLEQ W LERLRD L L D ALFA V DDTT EL ALTQLEREWVDWQAEAAG A Q F AQ P LPL 610
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 639 PIINNY L KNN L SGGKA S Q RFLAG Q VNFCTL M PMRSIPF D VVCLLGM T DG S YPR TMPVE GFDLM QKRMKP GDRSRRDDDRY 718
Cdd:TIGR01450 611 EVVRDH L AAL L DDEPT S A RFLAG G VNFCTL V PMRSIPF R VVCLLGM N DG D YPR QQHPA GFDLM AREPRK GDRSRRDDDRY 690
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 719 LFLEAL Q SA NKAF Y L SY I GRSIRDN T E KA PSVL VS EL LE Y CQ Q GYC L E GD NE lnpeasak RL VKQ LT IE HPL V P Y S Q Q S F 798
Cdd:TIGR01450 691 LFLEAL L SA QEQL Y I SY V GRSIRDN S E RP PSVL LG EL ID Y LV Q THY L D GD SA -------- RL AAR LT EQ HPL Q P F S P Q N F 762
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 799 IGDNI ---- SYA S EWL PT A KLEGAAA P E F - Q TA P LVY A PETK EL E L TE L Q RFW RL PV AY FF NRG L K V F F ESVESRV ED D E 873
Cdd:TIGR01450 763 QPGGR lkpf SYA R EWL AA A QAAEGKR P D F d Q PL P GRP A EPPA EL P L AD L I RFW AH PV KA FF QQR L G V S F PWEVETI ED S E 842
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 874 PF TI DG RTG Y GMKSD LL EDL L AY D DPNHVS Q isrd FYQQQK A Q G K LP I G S FG E I T A DKEVNTVKD L VAHIQPLTTL P LDD 953
Cdd:TIGR01450 843 PF EL DG LSR Y QINEQ LL RFA L QD D EERDLA Q ---- LAARLR A R G L LP S G A FG R I F A KEQQQRARQ L ATAVLAHRKQ P PQS 918
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 954 Q E VR L R fa FPH G e ME L Q GWL K Q R Y QA G ML R Y R G GK IR S HEI L AT W ID HL C LCA M G QQQLTH LF ---- G TDA I YHFGTIEK 1029
Cdd:TIGR01450 919 V E ID L D -- LQD G - IR L S GWL G Q L Y PD G LV R W R Y GK LN S PQL L RA W LE HL I LCA S G PPVESV LF crkv G RLH I ALPPLVPA 995
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499580551 1030 E K A YQE L ETILS LY IS G NCA PL AYL PK A ALA GL EA HV D K kgvwnddee THQ KALKK MADE Y N G TR F AGENSNDY 1103
Cdd:TIGR01450 996 E Q A LAY L SELVE LY RQ G MRQ PL PFP PK T ALA WA EA RY D A --------- QDE KALKK AREA Y E G NF F RKGEGDAP 1060
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-350
8.19e-124
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 382.43
E-value: 8.19e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 2 F T V Y H SN Q L D VL KS L VVE L I R l N PL DN PFE Q E Q ILVQS P GM SQ WL KI ELA KEL GIAAN LT FP L PA T F I W D LF TQ VL DDV P 81
Cdd:pfam04257 1 L T I Y Q SN R L E VL AE L LAA L L R - R PL AD PFE P E I ILVQS K GM AR WL TL ELA EKF GIAAN IE FP F PA S F L W K LF RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 82 KR S A F H KE AM TW KIVT LLPELL K Q E EFAPL QR YL EN D KN QLK CY QLA AK IAD I FDQYL VF RP E W IQQ WEAG EEVVE L EGE 161
Cdd:pfam04257 80 EE S P F A KE VL TW RLMR LLPELL E Q P EFAPL RH YL AD D GD QLK LF QLA ER IAD L FDQYL LY RP D W LAA WEAG KSPEA L PAD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 162 HP WQ PT LWRAL YDQTLAL ghspy HRA NMF E H F IET L DNYLQT gt LS K GM PKRLFV V GI T SLPP R YLD A L A AL GQ HIDVHL 241
Cdd:pfam04257 160 EA WQ AI LWRAL VAEIKLR ----- HRA RLY E D F LQA L QKEGDK -- AP K DL PKRLFV F GI S SLPP L YLD I L Q AL AR HIDVHL 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 242 MFT NPCR Y YWG E I R DR KY L A RL EA R N R LQVKW lddhsehigdteqlkgsieanfedelhtse V GN S LLASWGK L GRD NLC 321
Cdd:pfam04257 233 FLL NPCR E YWG D I V DR RE L L RL AE R E R QRRGE ------------------------------ E GN P LLASWGK Q GRD FFD 282
330 340
....*....|....*....|....*....
gi 499580551 322 LL S E M E A qei D A FV DVGN D N LL HSI Q S DI 350
Cdd:pfam04257 283 LL E E L E E --- D L FV EPEG D S LL SQL Q N DI 308
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
838-1127
1.52e-87
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 284.05
E-value: 1.52e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 838 EL T EL Q RFWR L PV A YFF N R G LKVFFE SV E SRVE D D EPF TI DG RTG Y GMKSD LL ED L LAYD D PN hvsqisr DF YQ QQK A Q G 917
Cdd:cd22353 1 EL D EL L RFWR H PV R YFF Q R R LKVFFE QE E TELP D E EPF SL DG LER Y QLNQQ LL NA L IEGK D ID ------- QL YQ RYR A S G 73
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 918 KLP I G S FGE ITAD K EVNTVKD L VAH I Q PL T T l P L D D Q E VR L RF afph GEME L Q GWLKQ RY Q A G M LR Y R G GK IRSHEI L AT 997
Cdd:cd22353 74 KLP Y G A FGE LYWE K QLKEMQE L AEK I R PL R T - E L K D L E IN L KI ---- NGIR L T GWLKQ VQ Q D G L LR W R P GK LNAKDG L SL 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 998 W ID HL CL CA M G QQQLTH L F G TDA - I YH F GTIEKEK A YQE LE TILSL Y IS G NCA PL AY LPK AAL A G LEA HV DKK GVWND DE 1076
Cdd:cd22353 149 W LE HL IY CA L G GKGESR L I G RNN s I WR F PPLSADQ A KKY LE KLIEG Y LQ G MNQ PL LL LPK SGG A W LEA CY DKK NQIKW DE 228
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 499580551 1077 E T HQ KA L KK MADEY NG TRF - A GE NSND Y VI R MW P EW N D E FGQV I FDN A QKV L 1127
Cdd:cd22353 229 N T QE KA R KK LLQAW NG NYY i S GE GDDP Y IQ R LI P QL N E E LIEQ I IKL A ERW L 280
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1136
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 1896.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1 MFTVYHSNQLDVLK S L V V E LI RLN PLD N PFE Q E Q ILVQSPGM S QWL KI ELA KEL GIAAN LT FPLPATFIWD L FT Q VL D D V 80
Cdd:PRK11069 1 MFTVYHSNQLDVLK A L M V F LI ERE PLD D PFE P E M ILVQSPGM A QWL QM ELA QKF GIAAN ID FPLPATFIWD M FT R VL P D I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 81 PK R SAF H KEAMTWK IV TLLP E LL KQE EF A PL QR YL EN D KNQL K CY QLAA K IAD I FDQYLV F RPEW IQQ WEAG EE V VE L EG 160
Cdd:PRK11069 81 PK E SAF N KEAMTWK LM TLLP Q LL ERP EF T PL RH YL TD D EDKR K LF QLAA R IAD L FDQYLV Y RPEW LAS WEAG QL V EG L GD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 161 EH PWQ PT LW R AL YDQ T LA LG HSPY HRAN MFEH FIETL DNYLQT gtl SK G M PKR L F VV GI TS LPP R YL D AL A ALG Q HID V H 240
Cdd:PRK11069 161 AQ PWQ AP LW K AL VEY T HQ LG QPRW HRAN LYQR FIETL ESATTC --- PP G L PKR V F IC GI SA LPP V YL Q AL Q ALG K HID I H 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 241 L M FTNPCRYYWG E I R D RKY LA R L E AR N R LQ v KWL D DHSEHIG D T E QLKGSIEANF E DE lhtse VGN S LLASWGKLGRDNL 320
Cdd:PRK11069 238 L L FTNPCRYYWG D I Q D PAF LA K L L AR Q R RH - SFE D RELPLFR D S E NAEQLFNSDG E QD ----- VGN P LLASWGKLGRDNL 311
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 321 C LLS EM E A - QE I DAFVD VGN DNLLH S IQ S DIL N LE ERS ---- R D DVLDN S Q HK Q P ISS DDRS ILL H S CHSP M REVEVLHD 395
Cdd:PRK11069 312 Y LLS QL E S s QE L DAFVD IEP DNLLH N IQ A DIL E LE DHA vigv N D EEFSR S D HK R P LDP DDRS LSF H V CHSP Q REVEVLHD 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 396 Q LL D M FAS DP D L K PRDIIVMVADI NV YS AA IQAVFGNA AFD RY I PFAISD QS A E Q EN PVL L AF MT L MA LP EN R CGLSEL L 475
Cdd:PRK11069 392 R LL A M LEA DP T L T PRDIIVMVADI DS YS PF IQAVFGNA PAE RY L PFAISD RR A R Q AH PVL Q AF IS L LS LP DS R FTAEDV L 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 476 T LLEVPA VMS RF KFNA E QFEIVKR W A EE T GIRWGLD NSTSAQFD LP EHN Q NS W L FG IQ RMLLGYAME QG AG LFE G MAS Y E 555
Cdd:PRK11069 472 A LLEVPA LAA RF AITE E GLRYLRQ W V EE S GIRWGLD DDNVRELE LP ATG Q HT W R FG LT RMLLGYAME SA AG EWQ G VLP Y D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 556 QVQ G MN AE I AG N LA QFID QL LTYQII L G QP HAITK W RTTIN QL M DDF LDVEL E G E LVVKS I RD Q L Q KLE E NLE DA GFDAP 635
Cdd:PRK11069 552 ESS G LI AE L AG H LA SLLM QL NIWRRG L A QP RPLEE W LPVCR QL L DDF FLPDA E T E AALAL I EQ Q W Q AII E EGL DA QYGDA 631
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 636 ISAPIINNY L KNN L SGGKA SQRFLAG Q VNFCTLMPMRSIPF D VVCLLGM T DG S YPRT M P VE GFDLM QKRM K P GDRSRRDD 715
Cdd:PRK11069 632 VPLSLLRDE L AQR L DQERI SQRFLAG P VNFCTLMPMRSIPF K VVCLLGM N DG V YPRT L P PL GFDLM SQKP K R GDRSRRDD 711
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 716 DRYLFLEAL Q SA NKAF Y L SYIGRSI R DN T E KA PSVLVSELLEY CQ Q G YCL E GD NE LN PEA SA K R LVKQ LT IE H PLV P YSQ 795
Cdd:PRK11069 712 DRYLFLEAL L SA QQQL Y I SYIGRSI Q DN S E RF PSVLVSELLEY IG Q S YCL P GD EA LN CDE SA A R VKAH LT CL H TRM P FDP 791
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 796 Q S F IGD - NI SYA S EWLP T A KLE G A A A P E F QTAPL vy APETK EL E L T ELQRFWR L PV AY FF N R G LKV F F ESV ES RVE D D EP 874
Cdd:PRK11069 792 Q N F QPG e QQ SYA R EWLP A A SQQ G K A H P D F VQPLP -- FEPPE EL T L D ELQRFWR H PV RA FF Q R R LKV N F RTE ES ELP D E EP 869
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 875 FT I DG RTG Y GMKSD LL ED L LAY DD PNH vsqisrd FYQQ Q K A Q GKLP I G S FGEI TADKEVNTVKD L VAHIQP l TTL P LDDQ 954
Cdd:PRK11069 870 FT L DG LSR Y QLNQQ LL NA L IEQ DD AER ------- LFRR Q R A A GKLP Y G A FGEI FWETQCQEMQQ L ADRVRA - CRQ P GQSL 941
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 955 E VR L RF afph GEME L Q GWL K Q RYQA G M LR Y R G G KIRSHEI L AT W ID HL CL CA M G QQQLTH LFG - TDAIYH F GTIEK E K A Y 1033
Cdd:PRK11069 942 E ID L TL ---- NGVQ L T GWL P Q VQPD G L LR W R P G LLSVADG L QL W LE HL VY CA S G GNGESR LFG r KEGEWR F PPLAA E Q A K 1017
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1034 Q E L ETILSL Y IS G NC APL AY LPK AAL A G L E A HV D KK - GVWN DDEET H QKA L KK MADEYN G TR - FA GE NSND Y VI R M W PEW 1111
Cdd:PRK11069 1018 Q Y L SQLIEG Y RE G MS APL LL LPK SGG A W L K A CY D RE n DAIL DDEET Q QKA R KK LLQAWE G NM m VR GE GDDI Y IQ R L W RQL 1097
1130 1140
....*....|....*....|....*
gi 499580551 1112 N DE FGQV I FDN AQ KV L RNALLHSEK 1136
Cdd:PRK11069 1098 D DE TLEA I IEQ AQ RY L LPLFRFNQS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1138
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1404.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1 M FTV YHSN Q L D VL KS L VVE L IRLN PL DN PF EQ E Q ILVQSPGM SQ WL KI ELA KEL GIAAN LT FPLPA T FIW D LF TQ VL D DV 80
Cdd:COG1330 1 M LHL YHSN R L E VL AD L LAA L LAAQ PL AD PF AP E V ILVQSPGM AR WL QL ELA ERF GIAAN IE FPLPA S FIW Q LF RA VL P DV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 81 P KR S A F H KEA M TW KIVT LLPELL KQE EFAPL Q RYL EN D KN Q L K C YQLA AKI AD I FDQYLV F RP E W IQQ WEA - GEEVVE L E 159
Cdd:COG1330 81 P EE S P F S KEA L TW RLMR LLPELL DEP EFAPL A RYL GD D ED Q R K R YQLA GRL AD L FDQYLV Y RP D W LAA WEA g EDVDGP L P 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 160 GEHP WQ PT LWRAL YDQ T L AL g H S PY HRAN MFEH FI ET L DN ylq TGTLSK G M P K R L FV V GI TS LPP R YL DA L A AL GQ HIDV 239
Cdd:COG1330 161 DDQA WQ AA LWRAL VAE T G AL - Q S AW HRAN LYQR FI AA L RS --- GEPRPA G L P E R V FV F GI SA LPP V YL EV L Q AL AR HIDV 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 240 HL MFT NPCR Y YWG E I R D RKY LARL E AR nrlqvkwlddhsehigdteqlkgsieanf E D ELHTS EVGN S LLASWGK L GRD N 319
Cdd:COG1330 237 HL FLL NPCR E YWG D I V D ARE LARL A AR ----------------------------- S D DDDLL EVGN P LLASWGK Q GRD F 287
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 320 L C LL S E M E A -- QEIDAFVD VGN D N LLH SI Q S DIL N L EERSRD dvldns QH K Q P ISS DDRS ILL H S CHSP M REVEVLHDQL 397
Cdd:COG1330 288 L D LL A E L E D es QEIDAFVD PPP D T LLH QL Q A DIL E L RPPAEG ------ AS K R P LAP DDRS LQV H A CHSP L REVEVLHDQL 361
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 398 L DM FA S DP D L K PRDI I VMV A DI NV Y SAA IQAVFG N A AF D - R Y IPF A I S D Q SA E QENP V L L AF MT L MA LP EN R CGL SE L L T 476
Cdd:COG1330 362 L AL FA D DP T L T PRDI L VMV P DI EA Y APY IQAVFG Q A PP D p R R IPF S I A D R SA R QENP L L A AF LQ L LD LP QS R FTA SE V L D 441
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 477 LLEVPAV MS RF KFNAEQF E IVK RW AE E T GIRWGLD NSTS A QFD LP EHN QN S W L FG IQ R M LLGYAM EQG AGL FE G MAS Y EQ 556
Cdd:COG1330 442 LLEVPAV AR RF GLDEDDL E RLR RW VA E A GIRWGLD AAHR A RLG LP ATE QN T W R FG LD R L LLGYAM GEE AGL WQ G ILP Y DE 521
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 557 V Q G MN AE IA G N LA Q F I D Q L LTYQII L GQ P HAITK W RTTINQ L M DDF LDVEL E G E LVVKSI R DQ L QK L E E NLED AG F D A P I 636
Cdd:COG1330 522 V E G LD AE LL G R LA E F L D R L AAWRQR L AE P RTLAE W LERLRA L L DDF FAPDE E D E WALAQL R RA L AE L A E QAAE AG Y D E P L 601
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 637 SAPIINNY L KNN L S G GKAS QRFLAG Q V N FCTLMPMRSIPF D VVCLLGM T DG SY PR TM P VE GFDLM QKRMKP GDRSRRDDD 716
Cdd:COG1330 602 PLAVVRDA L AAR L D G RPTR QRFLAG G V T FCTLMPMRSIPF R VVCLLGM N DG DF PR QQ P PL GFDLM ARHPRR GDRSRRDDD 681
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 717 RYLFLEAL Q SA NKAF Y L SY I GRSIRDN T E KA PSVLVSELL E Y CQ QG YC L E GD nelnpea S AK RL VKQ L TIE HPL V P Y S QQ 796
Cdd:COG1330 682 RYLFLEAL L SA RERL Y I SY V GRSIRDN S E RP PSVLVSELL D Y LA QG FA L P GD ------- S GE RL RAH L VVR HPL Q P F S PR 754
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 797 S F IGDN --- I SY AS EWL PT A KLE G AA --- AP E F QTA PL VYAPETK E LE L TE L Q RF W R L PV AY F FNRG L K V FFESV E SRV E 870
Cdd:COG1330 755 Y F EPGS prl F SY DA EWL AA A RAL G QP rap AP P F LAQ PL PPPEPEE E VT L DD L L RF L R H PV RA F LRQR L G V RLPEE E EEL E 834
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 871 D D EPF TI DG RTG Y GMKSD LLE D LLA Y DDP N hvsqisr DFYQQQK A Q G K LP I G S FGE ITADKEVNT V KD L V A HIQ PL TT - L 949
Cdd:COG1330 835 D A EPF EL DG LER Y QLRQR LLE A LLA G DDP A ------- ELFARLR A R G L LP P G A FGE LLLERLLEE V AA L A A ALR PL LA g P 907
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 950 PL DDQE V R L RF afph G EME L Q GWL KQRYQA G ML R Y R G GK IRSHEI L AT W ID HL C LCA M G QQQL - TH L F G T D AIYHFGTIE 1028
Cdd:COG1330 908 PL ESLD V D L DL ---- G GVR L T GWL DGVRGD G LV R W R P GK LKAKDL L RL W LE HL A LCA A G PPGG e SV L V G R D GVWRLAPLP 983
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 1029 K E K A YQE L ETI L S LY IS G NCA PL AYL PK A A L A GL EA H vdkkgvwn D D EE T HQ KAL KKMADEYN G TR F - A GE NSND Y VI R M 1107
Cdd:COG1330 984 P E E A RAL L AEL L A LY RQ G LRQ PL PLF PK T A W A WA EA C -------- Y D GK T QE KAL EAARQAWE G GD F v P GE GDDP Y LQ R V 1055
1130 1140 1150
....*....|....*....|....*....|..
gi 499580551 1108 WPEWND - E FGQVIFDN A QKV L RNA L L H S E KEK 1138
Cdd:COG1330 1056 FRGLDP l E LDERFAAL A ERL L LPL L A H L E AAE 1087
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1103
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1117.13
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 2 F TV YHSN Q LDVL KS L VVE L I R LN PLD N PFE Q E Q ILVQSPGM S QWL KIE LA KE LG I AANL T FPLPA T FIW DL F TQ VL DDV P 81
Cdd:TIGR01450 1 F RL YHSN R LDVL AA L LAA L L R DP PLD D PFE P E L ILVQSPGM A QWL QMT LA ED LG V AANL E FPLPA S FIW QM F VA VL PEI P 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 82 KR SAF H KE A M T W KIVT LLP E LL KQE EF AP L QR YL EN D KNQL K C YQLA AKI AD I FDQYLV F RP E W IQQ WEAG EE V VELEGE 161
Cdd:TIGR01450 81 EE SAF N KE V M S W RLMA LLP A LL ERP EF RT L RH YL AD D SDLR K R YQLA ERL AD L FDQYLV Y RP D W LAA WEAG DD V EGPGDL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 162 HP WQ PT LWRAL YDQTL A L G H s P Y HRAN MFEH FIE T L DNYLQT gtl SK G M P K RLF VV GI TS LPP R YL D ALAAL G QH I DVHL 241
Cdd:TIGR01450 161 QA WQ AI LWRAL VAGVG A D G Q - P T HRAN LHQR FIE R L RSGTTH --- PP G L P A RLF IF GI SA LPP T YL Q ALAAL A QH C DVHL 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 242 MF TNPCR Y YWG E I R D R KYLARL EA R N R LQVKW L DDH sehi G D T E QL kgsieanfedelhts EV G NS LLASWGKLGRD NLC 321
Cdd:TIGR01450 237 FL TNPCR E YWG D I I D F KYLARL LT R H R GADPL L PLR ---- Q D L E EH --------------- AA G HP LLASWGKLGRD FIY 297
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 322 LL S E M E A - QEIDAF VDVGN D N LLH SI Q S DIL N LE E R SR D D vldnsqh K Q P ISSD DRSI LL H S CHSP M REVEVLHD Q LL DM 400
Cdd:TIGR01450 298 LL P E L E Q s QEIDAF LEATP D T LLH QL Q A DIL H LE P R PV D A ------- K L P SAPL DRSI QF H A CHSP L REVEVLHD R LL AL 370
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 401 FAS DP D L K PRDIIVMV A DI NV Y SAA I Q AVFG N A AF D - R YI P FAI SD QSAE Q EN P V L L AF MT L MA LPE N R CGL SE L L T LL E 479
Cdd:TIGR01450 371 LEE DP T L Q PRDIIVMV P DI DS Y APY I E AVFG Q A PV D a R FL P YSL SD RRLR Q RE P L L E AF IH L LD LPE S R FTA SE I L A LL D 450
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 480 V P A V MS RF KFNAEQF E IVK RW AE E T GIRWGLD NSTSAQFD LP EHN Q - N S W L FG IQ RMLLGYAM EQG AG LFE G MAS Y EQ V Q 558
Cdd:TIGR01450 451 I P P V RA RF GIDEDDL E TLR RW VA E A GIRWGLD AEHRRELG LP ATD Q h N T W R FG LE RMLLGYAM GED AG IWQ G VLP Y DD V G 530
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 559 G MN AE I AG N LA Q F IDQ L LTYQII L G QP HAITK W RTTINQ L M D DFLD V ELEG EL VVKSIRDQLQKLEENLED A G F DA P ISA 638
Cdd:TIGR01450 531 G LQ AE L AG R LA E F LER L SHWRRG L A QP RPLEQ W LERLRD L L D ALFA V DDTT EL ALTQLEREWVDWQAEAAG A Q F AQ P LPL 610
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 639 PIINNY L KNN L SGGKA S Q RFLAG Q VNFCTL M PMRSIPF D VVCLLGM T DG S YPR TMPVE GFDLM QKRMKP GDRSRRDDDRY 718
Cdd:TIGR01450 611 EVVRDH L AAL L DDEPT S A RFLAG G VNFCTL V PMRSIPF R VVCLLGM N DG D YPR QQHPA GFDLM AREPRK GDRSRRDDDRY 690
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 719 LFLEAL Q SA NKAF Y L SY I GRSIRDN T E KA PSVL VS EL LE Y CQ Q GYC L E GD NE lnpeasak RL VKQ LT IE HPL V P Y S Q Q S F 798
Cdd:TIGR01450 691 LFLEAL L SA QEQL Y I SY V GRSIRDN S E RP PSVL LG EL ID Y LV Q THY L D GD SA -------- RL AAR LT EQ HPL Q P F S P Q N F 762
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 799 IGDNI ---- SYA S EWL PT A KLEGAAA P E F - Q TA P LVY A PETK EL E L TE L Q RFW RL PV AY FF NRG L K V F F ESVESRV ED D E 873
Cdd:TIGR01450 763 QPGGR lkpf SYA R EWL AA A QAAEGKR P D F d Q PL P GRP A EPPA EL P L AD L I RFW AH PV KA FF QQR L G V S F PWEVETI ED S E 842
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 874 PF TI DG RTG Y GMKSD LL EDL L AY D DPNHVS Q isrd FYQQQK A Q G K LP I G S FG E I T A DKEVNTVKD L VAHIQPLTTL P LDD 953
Cdd:TIGR01450 843 PF EL DG LSR Y QINEQ LL RFA L QD D EERDLA Q ---- LAARLR A R G L LP S G A FG R I F A KEQQQRARQ L ATAVLAHRKQ P PQS 918
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 954 Q E VR L R fa FPH G e ME L Q GWL K Q R Y QA G ML R Y R G GK IR S HEI L AT W ID HL C LCA M G QQQLTH LF ---- G TDA I YHFGTIEK 1029
Cdd:TIGR01450 919 V E ID L D -- LQD G - IR L S GWL G Q L Y PD G LV R W R Y GK LN S PQL L RA W LE HL I LCA S G PPVESV LF crkv G RLH I ALPPLVPA 995
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499580551 1030 E K A YQE L ETILS LY IS G NCA PL AYL PK A ALA GL EA HV D K kgvwnddee THQ KALKK MADE Y N G TR F AGENSNDY 1103
Cdd:TIGR01450 996 E Q A LAY L SELVE LY RQ G MRQ PL PFP PK T ALA WA EA RY D A --------- QDE KALKK AREA Y E G NF F RKGEGDAP 1060
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-350
8.19e-124
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 382.43
E-value: 8.19e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 2 F T V Y H SN Q L D VL KS L VVE L I R l N PL DN PFE Q E Q ILVQS P GM SQ WL KI ELA KEL GIAAN LT FP L PA T F I W D LF TQ VL DDV P 81
Cdd:pfam04257 1 L T I Y Q SN R L E VL AE L LAA L L R - R PL AD PFE P E I ILVQS K GM AR WL TL ELA EKF GIAAN IE FP F PA S F L W K LF RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 82 KR S A F H KE AM TW KIVT LLPELL K Q E EFAPL QR YL EN D KN QLK CY QLA AK IAD I FDQYL VF RP E W IQQ WEAG EEVVE L EGE 161
Cdd:pfam04257 80 EE S P F A KE VL TW RLMR LLPELL E Q P EFAPL RH YL AD D GD QLK LF QLA ER IAD L FDQYL LY RP D W LAA WEAG KSPEA L PAD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 162 HP WQ PT LWRAL YDQTLAL ghspy HRA NMF E H F IET L DNYLQT gt LS K GM PKRLFV V GI T SLPP R YLD A L A AL GQ HIDVHL 241
Cdd:pfam04257 160 EA WQ AI LWRAL VAEIKLR ----- HRA RLY E D F LQA L QKEGDK -- AP K DL PKRLFV F GI S SLPP L YLD I L Q AL AR HIDVHL 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 242 MFT NPCR Y YWG E I R DR KY L A RL EA R N R LQVKW lddhsehigdteqlkgsieanfedelhtse V GN S LLASWGK L GRD NLC 321
Cdd:pfam04257 233 FLL NPCR E YWG D I V DR RE L L RL AE R E R QRRGE ------------------------------ E GN P LLASWGK Q GRD FFD 282
330 340
....*....|....*....|....*....
gi 499580551 322 LL S E M E A qei D A FV DVGN D N LL HSI Q S DI 350
Cdd:pfam04257 283 LL E E L E E --- D L FV EPEG D S LL SQL Q N DI 308
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
838-1127
1.52e-87
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 284.05
E-value: 1.52e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 838 EL T EL Q RFWR L PV A YFF N R G LKVFFE SV E SRVE D D EPF TI DG RTG Y GMKSD LL ED L LAYD D PN hvsqisr DF YQ QQK A Q G 917
Cdd:cd22353 1 EL D EL L RFWR H PV R YFF Q R R LKVFFE QE E TELP D E EPF SL DG LER Y QLNQQ LL NA L IEGK D ID ------- QL YQ RYR A S G 73
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 918 KLP I G S FGE ITAD K EVNTVKD L VAH I Q PL T T l P L D D Q E VR L RF afph GEME L Q GWLKQ RY Q A G M LR Y R G GK IRSHEI L AT 997
Cdd:cd22353 74 KLP Y G A FGE LYWE K QLKEMQE L AEK I R PL R T - E L K D L E IN L KI ---- NGIR L T GWLKQ VQ Q D G L LR W R P GK LNAKDG L SL 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 998 W ID HL CL CA M G QQQLTH L F G TDA - I YH F GTIEKEK A YQE LE TILSL Y IS G NCA PL AY LPK AAL A G LEA HV DKK GVWND DE 1076
Cdd:cd22353 149 W LE HL IY CA L G GKGESR L I G RNN s I WR F PPLSADQ A KKY LE KLIEG Y LQ G MNQ PL LL LPK SGG A W LEA CY DKK NQIKW DE 228
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 499580551 1077 E T HQ KA L KK MADEY NG TRF - A GE NSND Y VI R MW P EW N D E FGQV I FDN A QKV L 1127
Cdd:cd22353 229 N T QE KA R KK LLQAW NG NYY i S GE GDDP Y IQ R LI P QL N E E LIEQ I IKL A ERW L 280
RecC_C
pfam17946 RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. ...
834-1064
2.12e-62
RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. This domain has a PD(D/E)XK like fold. Deleting this domain eliminates RecD assembly within the RecBCD complex.
Pssm-ID: 436165 [Multi-domain]
Cd Length: 223
Bit Score: 211.75
E-value: 2.12e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 834 TK E LE L TE L Q RF W R L P VAY F FNRG L K V FFESV E SRV ED D EPF TI DG RTGYGMKSD LLE D LLA YD D P nhvsqis RDFYQQQ 913
Cdd:pfam17946 1 PA E VT L DD L I RF L R N P ARA F LRQR L G V RLPEE E EAL ED A EPF AL DG LERWQLGDR LLE A LLA GA D L ------- EALLARL 73
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 914 K A Q G K LP I G S FGE ITADKEVNT V KD L VAHIQP L TTL - PL DDQE V R L rfaf PH G EME L Q GWL KQRYQA G M LR Y R GGKIRSH 992
Cdd:pfam17946 74 R A R G L LP P G A FGE LLLEELLAE V QA L AERLRA L LGG g PL RPLD V D L ---- DL G GGR L T GWL GGLRRR G L LR W R YSRLKAK 149
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499580551 993 EI L AT W ID HL C LCA M G QQQL T H L FGTDAIYHFGTIEKEK A YQE L ETI L S LY IS G NCA PL AYL PK A A L A GL EA 1064
Cdd:pfam17946 150 DL L RA W LE HL A LCA A G PEGT T L L GRDGSDLRLAPLPADD A REL L AQL L A LY RQ G LRR PL PFF PK T A W A YA EA 221
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
370-860
2.44e-18
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 90.96
E-value: 2.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 370 P ISSDDRS I LLHSCHSPMR EVE VLHDQLLDM f ASDPDLKP RDI I V M V A D INV Y SAA I QA VF gnaaf DR Y - IP FA I SDQSA 448
Cdd:COG3857 268 P PEEEPEG I EIIEAANRRA EVE AVAREIRRL - VREEGYRY RDI A V V V R D LEA Y APL I ER VF ----- AE Y g IP YF I DEKRP 341
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 449 EQEN P VLLAFMT L MA L PENRCGLSELLT LL EVPAV msr FKFNA E QFEIVKRWAEET GIR WGLDNSTSAQFDLPEHNQNSW 528
Cdd:COG3857 342 LSHH P LVELILS L LE L VRSNFRYEDVFR LL KTGLL --- RPLSR E EIDRLENYVLAY GIR GRRWLERYLEEEEELTDEEEE 418
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 529 LFGIQRM L LGYAM E QGAG L F E GMASYEQ V qgmn A E I A GN L AQ F IDQ L ltyqiil G Q P HAITK WR TTINQ lm D D FLDVE l E 608
Cdd:COG3857 419 DLERLNE L RDRLL E PLLP L R E RLKKAKT V ---- R E W A EA L YE F LEE L ------- G V P EKLEE WR EAEEA -- G D LEEAR - E 484
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 609 G E LVVKSIRDQ L QK L E E N L E D AGFDAPISAP I INNY L k NN L SG G KASQR fl AG QV NFCT L MPM R SIP F DV V CL LG MTD G S 688
Cdd:COG3857 485 H E QAWNALIEL L DE L V E V L G D EKLSLEEFLR I LESG L - EE L TF G LIPPS -- LD QV QVGG L DRA R GLD F KA V FV LG LNE G V 561
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 689 Y P RTMPVE G F -- D LMQK R MK ------- P GD R S R RDDD R Y LF LE AL QS A NKAF YLSY igr SIR D NTE KA -- PS V L VSE L L E 757
Cdd:COG3857 562 F P ARPRED G L ls D EERE R LN elglelp P TS R E R LLEE R F LF YR AL TR A SERL YLSY --- PLA D EEG KA ll PS P L IDR L R E 638
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499580551 758 Y --- CQQGYC LE GDN E L -- N PE ASAKR L VKQ L TIEHPLVPYSQ qsf IGDNISYA S ewl PTA klegaaapefqtaplvyap 832
Cdd:COG3857 639 L fpe LEERSL LE EEL E Y ig T PE SALSE L AAA L RQLELAPLWWD --- VYKWLLKL S --- VSR ------------------- 693
490 500
....*....|....*....|....*...
gi 499580551 833 etkelelte L QRFWRL P VAY F FNR GLK V 860
Cdd:COG3857 694 --------- L ETYAAC P FQF F LRY GLK L 712
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
