NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499595036|ref|WP_011275770|]
View 

MULTISPECIES: zinc-finger domain-containing protein [Staphylococcus]

Protein Classification

zf-C2HCIx2C domain-containing protein( domain architecture ID 10566706)

zf-C2HCIx2C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-C2HCIx2C pfam10782
Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with ...
 8-64 2.83e-22

Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.


:

Pssm-ID: 402422  Cd Length: 58  Bit Score: 80.06  E-value: 2.83e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499595036   8 SEQEAIDKIDELMNTYCDKCLLKTHIRKTEGKTQAHHFCISECSIGKQIKQLGNELQ 64
Cdd:pfam10782  2 DRKELLKEIDELMETYCDGCFLKKHFRKEKGKTYAHSFCINECTVGEKLKQYGNELT 58
 
Name Accession Description Interval E-value
zf-C2HCIx2C pfam10782
Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with ...
 8-64 2.83e-22

Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.


Pssm-ID: 402422  Cd Length: 58  Bit Score: 80.06  E-value: 2.83e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499595036   8 SEQEAIDKIDELMNTYCDKCLLKTHIRKTEGKTQAHHFCISECSIGKQIKQLGNELQ 64
Cdd:pfam10782  2 DRKELLKEIDELMETYCDGCFLKKHFRKEKGKTYAHSFCINECTVGEKLKQYGNELT 58
 
Name Accession Description Interval E-value
zf-C2HCIx2C pfam10782
Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with ...
 8-64 2.83e-22

Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.


Pssm-ID: 402422  Cd Length: 58  Bit Score: 80.06  E-value: 2.83e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499595036   8 SEQEAIDKIDELMNTYCDKCLLKTHIRKTEGKTQAHHFCISECSIGKQIKQLGNELQ 64
Cdd:pfam10782  2 DRKELLKEIDELMETYCDGCFLKKHFRKEKGKTYAHSFCINECTVGEKLKQYGNELT 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH