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Conserved domains on  [gi|499651887|ref|WP_011332621|]
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MULTISPECIES: DUF3509 domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3509 super family cl13458
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 3-86 3.67e-24

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


The actual alignment was detected with superfamily member pfam12021:

Pssm-ID: 432267  Cd Length: 87  Bit Score: 87.09  E-value: 3.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499651887   3 SISLLLGEALSPYQVTLTPRGRHGECLVTLKNGSGaIVVEREFNQAQLSDRRQLTDVVDGLHRDILIAEGRLEPCVIAAL 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSIARPDGGILLTLRDEDG-TVIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAAL 79


                 ....
gi 499651887  83 RNAA 86
Cdd:pfam12021 80 QSQQ 83
 
Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 3-86 3.67e-24

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


Pssm-ID: 432267  Cd Length: 87  Bit Score: 87.09  E-value: 3.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499651887   3 SISLLLGEALSPYQVTLTPRGRHGECLVTLKNGSGaIVVEREFNQAQLSDRRQLTDVVDGLHRDILIAEGRLEPCVIAAL 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSIARPDGGILLTLRDEDG-TVIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAAL 79


                 ....
gi 499651887  83 RNAA 86
Cdd:pfam12021 80 QSQQ 83
 
Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 3-86 3.67e-24

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


Pssm-ID: 432267  Cd Length: 87  Bit Score: 87.09  E-value: 3.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499651887   3 SISLLLGEALSPYQVTLTPRGRHGECLVTLKNGSGaIVVEREFNQAQLSDRRQLTDVVDGLHRDILIAEGRLEPCVIAAL 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSIARPDGGILLTLRDEDG-TVIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAAL 79


                 ....
gi 499651887  83 RNAA 86
Cdd:pfam12021 80 QSQQ 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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