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Conserved domains on  [gi|499657864|ref|WP_011338598|]
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OmpA family protein [Cereibacter sphaeroides]

Protein Classification

OmpA family protein( domain architecture ID 11458388)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395|22986056
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 204-307 5.21e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 127.67  E-value: 5.21e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 204 LVFGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVG 283
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 499657864 284 YLAPRATNRTEEGRARNRRVEVML 307
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 74-309 2.29e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 132.21  E-value: 2.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  74 TLDLLAPLRAALEAEGFRPLFECETRGCGGFDFRYATDVLPEPEMHVDLGDFRFFAAIREGAEGAEAVSLLISRSDATGF 153
Cdd:COG2885   59 AGAEAGGLSAGLELLDAGSLSATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGAS 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 154 VQVIEALPRTATPPAPVAVPDEPVAAEAPAPAAGTLILRLEETGAAVLEGLVFGSGSAELEDRAYPALADLAQWLKEDPA 233
Cdd:COG2885  139 AAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPD 218

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499657864 234 RRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLLA 309
Cdd:COG2885  219 LRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK-GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 204-307 5.21e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 127.67  E-value: 5.21e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 204 LVFGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVG 283
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 499657864 284 YLAPRATNRTEEGRARNRRVEVML 307
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 74-309 2.29e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 132.21  E-value: 2.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  74 TLDLLAPLRAALEAEGFRPLFECETRGCGGFDFRYATDVLPEPEMHVDLGDFRFFAAIREGAEGAEAVSLLISRSDATGF 153
Cdd:COG2885   59 AGAEAGGLSAGLELLDAGSLSATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGAS 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 154 VQVIEALPRTATPPAPVAVPDEPVAAEAPAPAAGTLILRLEETGAAVLEGLVFGSGSAELEDRAYPALADLAQWLKEDPA 233
Cdd:COG2885  139 AAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPD 218

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499657864 234 RRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLLA 309
Cdd:COG2885  219 LRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK-GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
MotB COG1360
Flagellar motor protein MotB [Cell motility];
202-308 4.20e-24

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 96.07  E-value: 4.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 202 EGLVFGSGSAELEDRAYPALADLAQWLKEDPaRRVVIVGHTDA----SGGLEGNVTLSRARAVSVRERLIArHGVDGAQV 277
Cdd:COG1360   59 DRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNvpisTARFPSNWELSAARAAAVVRYLIE-GGVPPERL 136

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499657864 278 TADGVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:COG1360  137 SAVGYGDTRPLAPNDTPEGRARNRRVEIVIL 167
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 206-307 9.99e-21

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 86.20  E-value: 9.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  206 FGSGSAELEDRAYPALADLAQWLKEDPARrVVIVGHTD----ASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADG 281
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDnvpiRTARFPSNWHLSEARAKAVADVLAQA-GGPAGRVRAEG 111

                          90       100
                  ....*....|....*....|....*.
gi 499657864  282 VGYLAPRATNRTEEGRARNRRVEVML 307
Cdd:TIGR03350 112 RGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
206-307 1.68e-20

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 87.62  E-value: 1.68e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIArHGVDGAQVTADGVGYL 285
Cdd:PRK10510 116 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALIT-QGVDASRIRTQGMGPA 194

                         90       100
                 ....*....|....*....|..
gi 499657864 286 APRATNRTEEGRARNRRVEVML 307
Cdd:PRK10510 195 NPIASNSTAEGKAQNRRVEITL 216
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 206-300 2.28e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 78.56  E-value: 2.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  206 FGSGSAELEDRAYPALADLAQWLKEDPAR-RVVIVGHTDASGGLEGNVTLSRARAVSVRERLIArHGVDGAQVTADGVGY 284
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVN-FGVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 499657864  285 LAPRATNRTEEGRARN 300
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 204-307 5.21e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 127.67  E-value: 5.21e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 204 LVFGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVG 283
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 499657864 284 YLAPRATNRTEEGRARNRRVEVML 307
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 74-309 2.29e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 132.21  E-value: 2.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  74 TLDLLAPLRAALEAEGFRPLFECETRGCGGFDFRYATDVLPEPEMHVDLGDFRFFAAIREGAEGAEAVSLLISRSDATGF 153
Cdd:COG2885   59 AGAEAGGLSAGLELLDAGSLSATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGAS 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 154 VQVIEALPRTATPPAPVAVPDEPVAAEAPAPAAGTLILRLEETGAAVLEGLVFGSGSAELEDRAYPALADLAQWLKEDPA 233
Cdd:COG2885  139 AAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPD 218

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499657864 234 RRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLLA 309
Cdd:COG2885  219 LRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK-GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
MotB COG1360
Flagellar motor protein MotB [Cell motility];
202-308 4.20e-24

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 96.07  E-value: 4.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 202 EGLVFGSGSAELEDRAYPALADLAQWLKEDPaRRVVIVGHTDA----SGGLEGNVTLSRARAVSVRERLIArHGVDGAQV 277
Cdd:COG1360   59 DRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNvpisTARFPSNWELSAARAAAVVRYLIE-GGVPPERL 136

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499657864 278 TADGVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:COG1360  137 SAVGYGDTRPLAPNDTPEGRARNRRVEIVIL 167
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 206-307 9.99e-21

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 86.20  E-value: 9.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  206 FGSGSAELEDRAYPALADLAQWLKEDPARrVVIVGHTD----ASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADG 281
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDnvpiRTARFPSNWHLSEARAKAVADVLAQA-GGPAGRVRAEG 111

                          90       100
                  ....*....|....*....|....*.
gi 499657864  282 VGYLAPRATNRTEEGRARNRRVEVML 307
Cdd:TIGR03350 112 RGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
206-307 1.68e-20

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 87.62  E-value: 1.68e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDASGGLEGNVTLSRARAVSVRERLIArHGVDGAQVTADGVGYL 285
Cdd:PRK10510 116 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALIT-QGVDASRIRTQGMGPA 194

                         90       100
                 ....*....|....*....|..
gi 499657864 286 APRATNRTEEGRARNRRVEVML 307
Cdd:PRK10510 195 NPIASNSTAEGKAQNRRVEITL 216
motB PRK08944
flagellar motor protein MotB; Reviewed
 189-310 4.22e-20

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 88.53  E-value: 4.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 189 LILRLEETGAavleglvFGSGSAELEDRAYPALADLAQWLKEDPARrVVIVGHTD----ASGGLEGNVTLSRARAVSVRE 264
Cdd:PRK08944 173 IIIRIREKGS-------FPSGSAFLQPKFKPVVRKIGELLKDVPGI-ITVSGHTDnvpiSSELYRSNWDLSSARAVAVAH 244

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 499657864 265 RLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLLAG 310
Cdd:PRK08944 245 ELLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIIIEQG 290
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 206-300 2.28e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 78.56  E-value: 2.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864  206 FGSGSAELEDRAYPALADLAQWLKEDPAR-RVVIVGHTDASGGLEGNVTLSRARAVSVRERLIArHGVDGAQVTADGVGY 284
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVN-FGVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 499657864  285 LAPRATNRTEEGRARN 300
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 203-310 3.23e-18

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 82.75  E-value: 3.23e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 203 GLVFGSGSAELEDRAYPALADLAQWLKEDPaRRVVIVGHTD----ASGGLEGNVTLSRARAVSVrERLIARHGVDGAQVT 278
Cdd:PRK09038 134 SLLFGSGDAMLSDQAFAILEKVAEVLKPAP-NPIHVEGFTDnvpiATAQFPSNWELSAARAASV-VRLLADDGVAPSRLA 211

                         90       100       110
                 ....*....|....*....|....*....|..
gi 499657864 279 ADGVGYLAPRATNRTEEGRARNRRVEVMLLAG 310
Cdd:PRK09038 212 AVGYGEFQPVADNDTAEGRARNRRVVLVILRN 243
motB PRK07734
flagellar motor protein MotB; Reviewed
 187-308 7.15e-17

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 78.63  E-value: 7.15e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 187 GTLILRLEETGAAV--LEGLVFGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTD----ASGGLEGNVTLSRARAV 260
Cdd:PRK07734 125 SSLQTKLTEEGLLItiLDNILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDnvpiANAQFASNWELSVMRAV 204

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 499657864 261 SVRERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:PRK07734 205 NFMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252
PRK07033 PRK07033
DotU family type VI secretion system protein;
206-309 6.97e-16

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 77.40  E-value: 6.97e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELEDRAYPALADLAQWLKEDPARrVVIVGHTD----ASGGLEGNVTLSRARAVSVRERLIARHGvDGAQVTADG 281
Cdd:PRK07033 318 FASASTSVRDRYQPVLARVADALNQVKGN-VLVTGYSDnvpiRTARFPSNWELSQARAQAVRALLAARLG-QPERVTAEG 395

                         90       100
                 ....*....|....*....|....*...
gi 499657864 282 VGYLAPRATNRTEEGRARNRRVEVMLLA 309
Cdd:PRK07033 396 RGDSDPVAPNDSAENRARNRRVEITLLV 423
motB PRK06667
flagellar motor protein MotB; Validated
 206-308 7.87e-12

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 64.05  E-value: 7.87e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELE-DRAYPALADLAQWLK--EDPARRVVIVGHTDA-----SGGLEGNVTLSRARAVSVRERLIARHGVDGAQV 277
Cdd:PRK06667 129 FYPGSAEVKlEENRETLQKIASFIGflDLAGRNFRIEGHTDNvdvnpEGPWKSNWELSGARAVNMLEYILNYGDQSESWF 208

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499657864 278 TADGVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:PRK06667 209 QVSGFAGSRPLATEDTPEGRAYNRRIDIVIL 239
PRK06925 PRK06925
flagellar motor protein MotB;
202-308 8.91e-10

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 57.85  E-value: 8.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 202 EGLVFGSGSAELEDRAYPALADLAQWLKEDPaRRVVIVGHTDA----SGGLEGNVTLSRARAVSVRERLIARHGVDGAQV 277
Cdd:PRK06925 118 EAVLFETGEADILKQAEPFLHKIGVLLSTIP-NDIKVEGHTDSrpisTYRYPSNWELSAARASSVIRYFTSKEKLDSSRF 196

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499657864 278 TADGVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:PRK06925 197 IAVGYADTKPVVPNTTEENMQENRRVEIVIS 227
PRK09039 PRK09039
peptidoglycan -binding protein;
206-307 1.82e-09

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 58.05  E-value: 1.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELEDRAYPALADLAQWLKEDPAR---------RVVivGHTD-----ASGGLEGNVTLSRARAVSVRERLIARhG 271
Cdd:PRK09039 228 FPTGSAELNPEGQAEIAKLAAALIELAKEippeinwvlRVD--GHTDnvplsGTGRFRDNWELSSARAISVVKFLIAL-G 304

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 499657864 272 VDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVML 307
Cdd:PRK09039 305 VPADRLAAAGFGEFQPLDPGDTPEARARNRRIELKL 340
PRK08126 PRK08126
hypothetical protein; Provisional
 205-306 2.73e-09

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 57.78  E-value: 2.73e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 205 VFGSGSAELEDRAYPALADLAQWLKEDPARrVVIVGHTDA----SGGLEGNVTLSRARAVSVRERLIArHGVDGAQVTAD 280
Cdd:PRK08126 326 MFVPGQATVNPAMGPLIAKIAREIARVGGK-VTVTGHTDNqpirSAQFASNLVLSEKRAAQVAQMLQS-AGVPASRLEAV 403

                         90       100
                 ....*....|....*....|....*.
gi 499657864 281 GVGYLAPRATNRTEEGRARNRRVEVM 306
Cdd:PRK08126 404 GKGDAQPVADNRTPQGRAQNRRVEIT 429
PRK09967 PRK09967
OmpA family protein;
240-307 1.85e-06

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 46.90  E-value: 1.85e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499657864 240 GHTDASGGLEGNVTLSRARAVSVRERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVML 307
Cdd:PRK09967  90 GHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
motB PRK08457
flagellar motor protein MotB; Reviewed
 190-305 3.41e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 47.40  E-value: 3.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 190 ILRLEETGAAVLE-----------GLVFGSGSAELEDrayPALAD----LAQWLKEDPAR-RVVIVGHTDASGGLEG--- 250
Cdd:PRK08457  99 IERRKGEGGALDQidngialklpsKLLFENGSAEIIN---ADMMDylkrIAKIITKLPKQvKINVRGYTDNSPLNKSryk 175

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499657864 251 -NVTLSRARAVSVRERLIARhGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEV 305
Cdd:PRK08457 176 dHYELAAARAYNVMKVLIQY-GINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
PRK07034 PRK07034
hypothetical protein; Provisional
 236-310 3.70e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 48.25  E-value: 3.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 236 VVIVGHTD----ASGGLEGNVTLSRARAVSVRERLIARHGVDGA---QVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:PRK07034 429 IEVIGHTDnkpfRSTSGNNNLKLSAARASVVADKLRESTQINEThqrEISAIGRGESDPLADNATEEGRKRNRRVDILWK 508


                 ..
gi 499657864 309 AG 310
Cdd:PRK07034 509 IG 510
PRK10808 PRK10808
outer membrane protein A; Reviewed
 206-305 1.95e-05

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 45.45  E-value: 1.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELEDRAYPALADL-AQWLKEDPAR-RVVIVGHTDASGGLEGNVTLSRARAVSVRERLIARhGVDGAQVTADGVG 283
Cdd:PRK10808 228 FNFNKATLKPEGQQALDQLySQLSNLDPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSK-GIPADKISARGMG 306

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499657864 284 YLAPRATNRTEEGRAR---------NRRVEV 305
Cdd:PRK10808 307 KSNPVTGNTCDNVKPRaalidclapDRRVEI 337
PRK09040 PRK09040
hypothetical protein; Provisional
 251-305 3.94e-05

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 43.85  E-value: 3.94e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 499657864 251 NVTLSRARAVSVRERLIARhGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEV 305
Cdd:PRK09040 146 NWELSAQRALTVTRALIDA-GVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEI 199
motB PRK09041
motility protein MotB;
206-308 3.02e-04

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 41.85  E-value: 3.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499657864 206 FGSGSAELEDRAYPALADLAQWLKEDPaRRVVIVGHTDA---SGGLEG--NVTLSRARAVSVRERLIArHGVDGAQVtAD 280
Cdd:PRK09041 165 FATGSAEVEPYMRDILREIAPVLNDVP-NRISLSGHTDAtpyANGEKGysNWELSADRANASRRELVA-GGMDEGKV-LR 241

                         90       100
                 ....*....|....*....|....*...
gi 499657864 281 GVGYLAPRATNRTEEGRARNRRVEVMLL 308
Cdd:PRK09041 242 VVGLASTMLLDKKDPLNPVNRRISIVVL 269
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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