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Conserved domains on  [gi|499658486|ref|WP_011339220|]
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ABC transporter permease [Cereibacter sphaeroides]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-270 3.45e-57

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 183.77  E-value: 3.45e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   4 RPRSFYILAAVFGLFLLFLYGPTITIAILSFQGpEGGLTFPMRGVSLHWFRDLFQEQavgDIWGAFGRSLLLGLLVMVTT 83
Cdd:COG1177    2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFND-SWFLTFPPEGFTLRWYAELFSDP---RLLDALLNSLLIALLSTLLA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  84 VTVSVMGGLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASsGFGAQLTWTLPFGLLIMFAVFNR 162
Cdd:COG1177   78 TVLGTPAALALaRYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWG-LILAHVVFTLPFVVLVVLARLQG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 163 FNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS-YNTLPLEIYGMTTNVTTPVIFAL 241
Cdd:COG1177  157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPgVTTLPVYIYSMIRRGISPEINAL 236

                        250       260
                 ....*....|....*....|....*....
gi 499658486 242 GTLTTVFSFavigVFLVTVWVLGRRRARA 270
Cdd:COG1177  237 STLLILLSL----LLLLLAERLRRRGERR 261
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-270 3.45e-57

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 183.77  E-value: 3.45e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   4 RPRSFYILAAVFGLFLLFLYGPTITIAILSFQGpEGGLTFPMRGVSLHWFRDLFQEQavgDIWGAFGRSLLLGLLVMVTT 83
Cdd:COG1177    2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFND-SWFLTFPPEGFTLRWYAELFSDP---RLLDALLNSLLIALLSTLLA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  84 VTVSVMGGLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASsGFGAQLTWTLPFGLLIMFAVFNR 162
Cdd:COG1177   78 TVLGTPAALALaRYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWG-LILAHVVFTLPFVVLVVLARLQG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 163 FNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS-YNTLPLEIYGMTTNVTTPVIFAL 241
Cdd:COG1177  157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPgVTTLPVYIYSMIRRGISPEINAL 236

                        250       260
                 ....*....|....*....|....*....
gi 499658486 242 GTLTTVFSFavigVFLVTVWVLGRRRARA 270
Cdd:COG1177  237 STLLILLSL----LLLLLAERLRRRGERR 261
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 16-269 3.92e-25

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 100.44  E-value: 3.92e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  16 GLFLLFLYGPTITIAILSFQGPEGGLTFpmRGVSLHWFRDLFQEQAVGDiwgAFGRSLLLGLLVMVTTVTVSVMGGLA-F 94
Cdd:PRK09500  11 TLVYAYLYIPIIILIVNSFNSSRFGINW--KGFTTKWYELLFNNDSLLQ---AAQHSLTMAVFSATFATLIGSLTAVAlY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  95 RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFgAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQ 174
Cdd:PRK09500  86 RYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLF-AHITFCLPFVVVTVYSRLKGFDVRMLEAAKDL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 175 GASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDE-FARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTTVFSFavi 253
Cdd:PRK09500 165 GASEFTILRKIILPLALPAVAAGWLLSFTLSLDDvVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSL--- 241

                        250
                 ....*....|....*.
gi 499658486 254 gVFLVTVWVLGRRRAR 269
Cdd:PRK09500 242 -VLVILSQLLARDKTK 256
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-227 1.19e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 58.54  E-value: 1.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   11 LAAVFGLFLLFLYGPTITIAILSFQGPEGGLtfpmrgVSLHWFRDLFQEQAVgdiWGAFGRSLLLGLLVMVTTVTVSVMG 90
Cdd:TIGR03262   7 LAGMILALLLFLLLPLLALLTKSVYDSDGDF------IGLANFAEYFATPGL---LQSLGNSLTVSAIVTAIVVPLAFAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   91 GLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSG--FG------AQLTWTLPFGLLIMFAVFN 161
Cdd:TIGR03262  78 AYALtRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFsiYGfwgiviGEVFYTFPHALMILVTALS 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499658486  162 RFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIY 227
Cdd:TIGR03262 158 LADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIY 223
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 90-253 3.07e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 52.28  E-value: 3.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  90 GGLAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGA---QLTWTLPFGLLIMFAVFNRFNPA 166
Cdd:cd06261   23 GIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAlilALLLIAPFARLIRRAALESIPKD 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 167 YEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTT 246
Cdd:cd06261  103 LVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVA 182


                 ....*..
gi 499658486 247 VFSFAVI 253
Cdd:cd06261  183 LILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 92-256 2.65e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.83  E-value: 2.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   92 LAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGAQLTWTlPFGLLIMFAVFNRFNPAYEEAA 171
Cdd:pfam00528   8 AALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWA-GYARLIRRAALRSLPSDLVEAA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  172 RDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS---YNTLPLEIYGMTTNVTTPVIFALGTLTTVF 248
Cdd:pfam00528  87 RALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWpglGLLLIEAILGYDYPEIQGPVLAAALILLLL 166


                  ....*...
gi 499658486  249 SFAVIGVF 256
Cdd:pfam00528 167 NLLVDILQ 174
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-270 3.45e-57

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 183.77  E-value: 3.45e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   4 RPRSFYILAAVFGLFLLFLYGPTITIAILSFQGpEGGLTFPMRGVSLHWFRDLFQEQavgDIWGAFGRSLLLGLLVMVTT 83
Cdd:COG1177    2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFND-SWFLTFPPEGFTLRWYAELFSDP---RLLDALLNSLLIALLSTLLA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  84 VTVSVMGGLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASsGFGAQLTWTLPFGLLIMFAVFNR 162
Cdd:COG1177   78 TVLGTPAALALaRYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWG-LILAHVVFTLPFVVLVVLARLQG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 163 FNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS-YNTLPLEIYGMTTNVTTPVIFAL 241
Cdd:COG1177  157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPgVTTLPVYIYSMIRRGISPEINAL 236

                        250       260
                 ....*....|....*....|....*....
gi 499658486 242 GTLTTVFSFavigVFLVTVWVLGRRRARA 270
Cdd:COG1177  237 STLLILLSL----LLLLLAERLRRRGERR 261
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 16-269 3.92e-25

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 100.44  E-value: 3.92e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  16 GLFLLFLYGPTITIAILSFQGPEGGLTFpmRGVSLHWFRDLFQEQAVGDiwgAFGRSLLLGLLVMVTTVTVSVMGGLA-F 94
Cdd:PRK09500  11 TLVYAYLYIPIIILIVNSFNSSRFGINW--KGFTTKWYELLFNNDSLLQ---AAQHSLTMAVFSATFATLIGSLTAVAlY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  95 RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFgAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQ 174
Cdd:PRK09500  86 RYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLF-AHITFCLPFVVVTVYSRLKGFDVRMLEAAKDL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 175 GASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDE-FARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTTVFSFavi 253
Cdd:PRK09500 165 GASEFTILRKIILPLALPAVAAGWLLSFTLSLDDvVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSL--- 241

                        250
                 ....*....|....*.
gi 499658486 254 gVFLVTVWVLGRRRAR 269
Cdd:PRK09500 242 -VLVILSQLLARDKTK 256
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 8-247 3.18e-21

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 90.15  E-value: 3.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   8 FYILAAVFGLFLLFlygPTITIAILSFQGPEGGLTFPM----RGVSLHWFRDLFQEqavGDIWGAFGRSLLLGLLVMVTT 83
Cdd:COG0395   17 LYLLLILLALLFLF---PLYWMVVTSFKPPAEIFSGPPsllpSEFTLENYRAAFTD---GPFGRYLLNSLIVAVVSTVLS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  84 VTVSVMGGLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGlpvhWASSGFG---AQLTWTLPFGLLIMFAV 159
Cdd:COG0395   91 LLLSSLAAYALaRFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLG----LLNTYWGlilPYLAFGLPFGIFLLRQF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 160 FNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEF--ARTLLTAGSYNTLPLEIYGMTTNVTTP- 236
Cdd:COG0395  167 FRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFlwPLILLTSPDLRTLPVGLASFQGQYGTDw 246

                        250
                 ....*....|..
gi 499658486 237 -VIFALGTLTTV 247
Cdd:COG0395  247 gLLMAAAVIATL 258
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
3-266 2.20e-20

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 90.22  E-value: 2.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   3 PRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGpeggltFPMRGVSLHWFRDLFQEqavGDIWGAFGRSLLLGLLVMVT 82
Cdd:COG1178  283 LGRWRWLALALCLLLVLLGLLLPLLALLLWSLTK------ALDDNLTLDNYRFVLLD---PSLLRALLNSLLLALLAALL 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  83 TVTVSVMGGLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVgLIFSQAGLPVHWASSGFG---AQLTWTLPFGLLIMFA 158
Cdd:COG1178  354 AVLLALLLAYLVrRRRGRLARLLDRLAMLPYAVPGIVLGLGL-LLLFNRPLPLLLYGTLAIlvlAYVVRFLPFALRSLEA 432

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 159 VFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS-YNTLPLEIYGMTTNVTTPV 237
Cdd:COG1178  433 ALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPgFETLAVLIYQLASSGRYGE 512

                        250       260
                 ....*....|....*....|....*....
gi 499658486 238 IFALGTLTTVFSFAVIGVFLvtvWVLGRR 266
Cdd:COG1178  513 AAALALLLVLVSLLPVLLLE---RLLGRR 538
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
3-275 9.74e-18

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 82.52  E-value: 9.74e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   3 PRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPeggltfpmrgvsLHWFRDLFQEQAvgdIWGAFGRSLLLGLLVMVT 82
Cdd:COG1178    5 PRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG------------LANFWALLSDPY---LWRALGNTLLLALLVTLL 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  83 TVTVSVMGGLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFG--------------AQLTW 147
Cdd:COG1178   70 SLLLGVPLAWLLaRTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGleppdiyglggiilVLVLF 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 148 TLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIY 227
Cdd:COG1178  150 NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIY 229

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 499658486 228 gmtTNVTTPVIFALGT-LTTVFSFAVIGVFLVTVWVLGRRRARAGSDAG 275
Cdd:COG1178  230 ---QAWLGDFDLGAAAaLALVLLLLVLLLLLLERRLRRRRRYATVGGRA 275
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-271 7.89e-17

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 78.27  E-value: 7.89e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   1 MEPRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPeGGLTFPMRGVSLHWFRDLFQEQAvgdIWGAFGRSLLLGLLVM 80
Cdd:COG1176    5 LRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTR-DPYGGVVPGFTLENYARLFTDPL---YLKVLLRTLWIALLTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  81 VTTVTvsvmggLAF-------RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGL-------------PVHWASSG 140
Cdd:COG1176   81 LICLL------LGYpiayflaRAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLlnslllalglidePLRLLYTE 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 141 FGAQLTWT---LPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAG 217
Cdd:COG1176  155 FAVVIGLVyvyLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGG 234

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499658486 218 SYN-TLPLEIYG-MTTNVTTPVIFALGTLTTVFSFAVIGVFLvtvWVLGRRRARAG 271
Cdd:COG1176  235 GKVlMIGNLIYQqFLSALNWPLAAALAVVLLLIVLLVLLLYL---RLLRRRRLLGG 287
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 9-232 2.67e-14

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 70.95  E-value: 2.67e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   9 YILAAVFGLFLLFlygPTITIAILSFqGPEGGLTFPM---RGVSLHWFRDLFQEQAVGdIWgaFGRSLLLGLLVMVTTVT 85
Cdd:COG3833   19 HLVLIILAIIALF---PILWVVSASF-NPGGSLYSSSlipENFTLENYKKLFTETPFL-RW--FLNSLIVAVVTAIISVF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  86 VSVMGGLAF-RKRFAG------SALLFQLVVASLVIPSI-LVSLGVGLIFSQAGLPVhwassgfgAQLTWTLPFGLLIMF 157
Cdd:COG3833   92 LAALAAYAFsRFRFKGrkagllALLLLQMFPAFLALVALyLLLSALGLLNTLLGLIL--------VYLGGAIPFNTWLMK 163

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499658486 158 AVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEF--ARTLLTAGSYNTLPLEIYGMTTN 232
Cdd:COG3833  164 GYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFilASVLLRSPENYTLAVGLYSFVSD 240
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 13-276 1.26e-11

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 63.33  E-value: 1.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  13 AVFGLFLLFLYGPTITIAILSFQGPEggLTFPMRGVSLHWFRDLFQEQAVGDiwgAFGRSLLLGLLVMVTTVTVSVMGGL 92
Cdd:PRK10592  14 VILVLGFTFLYAPMLMLVIYSFNSSK--LVTVWAGWSTRWYGELFRDDAMMS---AVGLSLTIAACAATAAAILGTIAAV 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  93 AFRK--RFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWAS-----SGFGAQLTWTLPFGLLIMFAVFNRFNP 165
Cdd:PRK10592  89 VMVRfgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPAdrgmlTIWLAHVTFCTAYVAVVISSRLRELDR 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 166 AYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS-YNTLPLEIYGMTTNVTTPVIFALGTL 244
Cdd:PRK10592 169 SIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPgATTLPMLVFSSVRMGVNPEINALATL 248

                        250       260       270
                 ....*....|....*....|....*....|..
gi 499658486 245 tTVFSFAVIGvfLVTVWVLGRRRARAGSDAGK 276
Cdd:PRK10592 249 -ILGVVGIVG--FIAWYLMARAEKQRIRDIQR 277
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
4-267 2.62e-11

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 62.84  E-value: 2.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   4 RPRSFYILAA-VFGLFLLFLYGPTITIAILSFQGpEGGLTFPMRGVSLHWFRDLFQEqavGDIWGAFGRSLLLGLLVMVT 82
Cdd:COG1175   16 RRLAAYLFLLpALLLLLVFVLYPLLYTLYLSFTD-WNLLGPPPEFVGLDNYARLFTD---PRFWNALGNTLLFTVVSVPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  83 TVTVSVMGGLAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFS-QAGL-----------PVHWASSGFGAQLT---- 146
Cdd:COG1175   92 QLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLlnallgalglePINWLGDPSLALPAviiv 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 147 ---WTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLS---YDEFArtLLTAG--- 217
Cdd:COG1175  172 tvwKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGAlqvFDLVY--VLTGGgpg 249

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 499658486 218 -SYNTLPLEIYgmtTNVTTPVIFALGTLTTVFSFAVIGVFLVTVWVLGRRR 267
Cdd:COG1175  250 nSTTTLVLYIY---QTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 99-269 6.58e-11

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 61.30  E-value: 6.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  99 AGSALLFqLVVASLVIPSILVSLGVGLIFSQAGLPVhwassgfgAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASA 178
Cdd:COG0555  107 AGIALLL-LFGPNGWLGQLLAPLGIKVAFTPLGIVL--------AQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASR 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 179 WQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSY----NTLPLEIYGMTTNVTTPVIFALGTLTTVFSFAVig 254
Cdd:COG0555  178 WQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLpmktEILPLLIYLKLEEGDYAGATAIALVLLLISFLL-- 255

                        170
                 ....*....|....*
gi 499658486 255 vfLVTVWVLGRRRAR 269
Cdd:COG0555  256 --LLLINLLQRRSRR 268
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
95-217 6.23e-10

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 58.61  E-value: 6.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  95 RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASsGFGAQLTWT------------LPFGLLIMFAVFNR 162
Cdd:PRK10971  87 RYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLA-KFDIKVTYTwlgiavamaftsIPFVVRTVQPVLEE 165

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 499658486 163 FNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAG 217
Cdd:PRK10971 166 LGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-227 1.19e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 58.54  E-value: 1.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   11 LAAVFGLFLLFLYGPTITIAILSFQGPEGGLtfpmrgVSLHWFRDLFQEQAVgdiWGAFGRSLLLGLLVMVTTVTVSVMG 90
Cdd:TIGR03262   7 LAGMILALLLFLLLPLLALLTKSVYDSDGDF------IGLANFAEYFATPGL---LQSLGNSLTVSAIVTAIVVPLAFAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   91 GLAF-RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSG--FG------AQLTWTLPFGLLIMFAVFN 161
Cdd:TIGR03262  78 AYALtRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFsiYGfwgiviGEVFYTFPHALMILVTALS 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499658486  162 RFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIY 227
Cdd:TIGR03262 158 LADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIY 223
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 95-249 2.83e-08

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 53.51  E-value: 2.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   95 RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHW-ASSGFGAQLTW----------TLPFGLLIMFAVFNRF 163
Cdd:TIGR00969  89 RYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWlASFGIQIIFTWpgmalamifvSLPFVVREVQPVLEEL 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  164 NPAYEEAARDQGASAWQTIRHVVLPIIAPSLI-GVALfGFTLSYDEFARTLLTAGSY----NTLPLEIYGMTTNVTTPVI 238
Cdd:TIGR00969 169 GTEAEEAAATLGASGWQTFWRVTLPSIRWALLyGVVL-TFARALGEFGAVVVVSGNIpgktLTLPLLIEERLEQYDYPGA 247

                         170
                  ....*....|.
gi 499658486  239 FALGTLTTVFS 249
Cdd:TIGR00969 248 YVIAAVLLLVS 258
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-227 2.89e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 53.85  E-value: 2.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   2 EPRPRSFYILAAVFGLFLLFLYgPTITIAILSFQGPEGgltfpmrgVSLHWFRDLFQEQAVGD-----IWGAFGRS---L 73
Cdd:PRK15050  20 RRLRPLLWLLLPLLVLAPLVVY-PLVRVVLQSLTGEHG--------LGLATYRAVLGSPDFRGallttLQIAFASTagcL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  74 LLGLLVMVTtvtvsvmggLAFRKrFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGL--------------PVHWASS 139
Cdd:PRK15050  91 VLGVLLALV---------LAFVP-FPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSvnialqrlfgleapPLDFLYS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 140 GFG---AQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLT- 215
Cdd:PRK15050 161 PGGvilAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTg 240

                        250
                 ....*....|..
gi 499658486 216 AGSYNTLPLEIY 227
Cdd:PRK15050 241 AKDVVTLPVLIY 252
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 90-253 3.07e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 52.28  E-value: 3.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  90 GGLAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGA---QLTWTLPFGLLIMFAVFNRFNPA 166
Cdd:cd06261   23 GIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAlilALLLIAPFARLIRRAALESIPKD 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 167 YEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFALGTLTT 246
Cdd:cd06261  103 LVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVA 182


                 ....*..
gi 499658486 247 VFSFAVI 253
Cdd:cd06261  183 LILLLLS 189
cysT CHL00187
sulfate transport protein; Provisional
 114-217 4.86e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 49.63  E-value: 4.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 114 IPSILVSLGVGLIFSQAGLPVhwassgfgAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPS 193
Cdd:CHL00187 122 IGHLLSHLGIQIVFTKLGVLL--------AMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPA 193

                         90       100
                 ....*....|....*....|....
gi 499658486 194 LIGVALFGFTLSYDEFARTLLTAG 217
Cdd:CHL00187 194 LLTGLALTFSRAIGEYGSIVIISS 217
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 92-256 2.65e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.83  E-value: 2.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486   92 LAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGAQLTWTlPFGLLIMFAVFNRFNPAYEEAA 171
Cdd:pfam00528   8 AALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWA-GYARLIRRAALRSLPSDLVEAA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  172 RDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGS---YNTLPLEIYGMTTNVTTPVIFALGTLTTVF 248
Cdd:pfam00528  87 RALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWpglGLLLIEAILGYDYPEIQGPVLAAALILLLL 166


                  ....*...
gi 499658486  249 SFAVIGVF 256
Cdd:pfam00528 167 NLLVDILQ 174
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 114-217 2.70e-05

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 44.62  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  114 IPSILVSLGVGLIFSQAGLPVhwassgfgAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPS 193
Cdd:TIGR02139 117 IGSFLAPLGIKIAFTPLGIVI--------ALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPA 188

                          90       100
                  ....*....|....*....|....
gi 499658486  194 LIGVALFGFTLSYDEFARTLLTAG 217
Cdd:TIGR02139 189 LLTGFALAFARAVGEYGSVIFIAG 212
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 60-270 8.82e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 43.71  E-value: 8.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  60 QAVGDIWGAFGRSLLLGLLVMVTTVTVSVMGGLAFRKRFAGSALLFQLVVA-SLVIPSILVSLGVGLIFSQAGLPVHWAS 138
Cdd:COG4135  349 RAAPGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYlPLLVPQIAFLFGLQVLLLRLGLDGTWLA 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486 139 SGFgAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLT-AG 217
Cdd:COG4135  429 VIW-AHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIgAG 507

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 499658486 218 SYNTLPLEIYGMTTNVTTPVIFALGTLTTVFSFAVIGVFLVTVWVLGRRRARA 270
Cdd:COG4135  508 RVATLTTEAVALASGGDRRVIAVYALLQALLPLLGFALALLIPALLFRRRRGM 560
modB PRK09421
molybdate ABC transporter permease subunit;
95-227 1.51e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 42.22  E-value: 1.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  95 RKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGAQL--TWT--------LPFGLLI--MFAVFNR 162
Cdd:PRK09421  38 RCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWFGISFafSWRgaalaaavMAFPLMVraIRLSLEA 117

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499658486 163 FNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLL----TAGSYNTLPLEIY 227
Cdd:PRK09421 118 VDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITfvsnIPGETQTIPSAMY 186
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 149-196 3.48e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 41.21  E-value: 3.48e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 499658486 149 LPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIG 196
Cdd:PRK09497 162 LPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIA 209
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 94-227 2.74e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 39.05  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  94 FRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLpVHWASSGFGAQLTWT---------------LPFGLLIMFA 158
Cdd:PRK09433  72 YRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGW-LAQLLQALGLEWPFSiyglqgillahvffnLPLATRLLLQ 150

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499658486 159 VFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFArTLLTAG---SYNTLPLEIY 227
Cdd:PRK09433 151 ALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFTSFA-TVLTLGggpKATTIELAIY 221
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 149-243 8.42e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 36.86  E-value: 8.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499658486  149 LPFGLLIMFAVFNRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDE-FARTLLTAGSYNTLPLEIY 227
Cdd:TIGR02138 163 LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGEtMAVTMVIGNVFPISPLSLF 242

                          90
                  ....*....|....*.
gi 499658486  228 GMTTNVTTPVIFALGT 243
Cdd:TIGR02138 243 DPGTTITSLIANQFGE 258
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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