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Conserved domains on  [gi|499664946|ref|WP_011345680|]
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MULTISPECIES: SEC-C metal-binding domain-containing protein [Xanthomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 462-485 2.85e-11

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


:

Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 58.37  E-value: 2.85e-11
                         10        20
                 ....*....|....*....|....
gi 499664946 462 GKKVGRNEPCPCGLGKKYKKCHGA 485
Cdd:COG3318   21 EPKVGRNDPCPCGSGKKYKKCCGA 44
PRK02250 super family cl30715
hypothetical protein; Provisional
 404-484 8.03e-09

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PRK02250:

Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 54.88  E-value: 8.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499664946 404 AGDTNSEDFILMpcEAWPDDVRDHYqALNEDWRFFDTPQLQQY------EQTVTQFVPPNEAFVGKKVGRNEPCPCGLGK 477
Cdd:PRK02250  83 AGSTPNEGFVEF--KAYFDEEGKRY-CLEERSRFLKENGLWYYidgtfpEEEPEQDPRLNQSVSSLKQGRNDPCICGSGK 159


                 ....*..
gi 499664946 478 KYKKCHG 484
Cdd:PRK02250 160 KFKKCCG 166
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 462-485 2.85e-11

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 58.37  E-value: 2.85e-11
                         10        20
                 ....*....|....*....|....
gi 499664946 462 GKKVGRNEPCPCGLGKKYKKCHGA 485
Cdd:COG3318   21 EPKVGRNDPCPCGSGKKYKKCCGA 44
PRK05590 PRK05590
hypothetical protein; Provisional
 462-484 1.04e-10

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 60.37  E-value: 1.04e-10
                         10        20
                 ....*....|....*....|...
gi 499664946 462 GKKVGRNEPCPCGLGKKYKKCHG 484
Cdd:PRK05590 142 ENKVGRNDPCPCGSGKKYKKCCG 164
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 467-484 4.39e-09

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 51.71  E-value: 4.39e-09
                          10
                  ....*....|....*...
gi 499664946  467 RNEPCPCGLGKKYKKCHG 484
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
PRK02250 PRK02250
hypothetical protein; Provisional
 404-484 8.03e-09

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 54.88  E-value: 8.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499664946 404 AGDTNSEDFILMpcEAWPDDVRDHYqALNEDWRFFDTPQLQQY------EQTVTQFVPPNEAFVGKKVGRNEPCPCGLGK 477
Cdd:PRK02250  83 AGSTPNEGFVEF--KAYFDEEGKRY-CLEERSRFLKENGLWYYidgtfpEEEPEQDPRLNQSVSSLKQGRNDPCICGSGK 159


                 ....*..
gi 499664946 478 KYKKCHG 484
Cdd:PRK02250 160 KFKKCCG 166
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 456-484 1.61e-07

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 49.61  E-value: 1.61e-07
                          10        20
                  ....*....|....*....|....*....
gi 499664946  456 PNEAFVGKKVGRNEPCPCGLGKKYKKCHG 484
Cdd:TIGR04102  80 PKTTTFEKTPNRNDPCPCGSGKKYKKCCG 108
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 462-485 2.85e-11

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 58.37  E-value: 2.85e-11
                         10        20
                 ....*....|....*....|....
gi 499664946 462 GKKVGRNEPCPCGLGKKYKKCHGA 485
Cdd:COG3318   21 EPKVGRNDPCPCGSGKKYKKCCGA 44
PRK05590 PRK05590
hypothetical protein; Provisional
 462-484 1.04e-10

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 60.37  E-value: 1.04e-10
                         10        20
                 ....*....|....*....|...
gi 499664946 462 GKKVGRNEPCPCGLGKKYKKCHG 484
Cdd:PRK05590 142 ENKVGRNDPCPCGSGKKYKKCCG 164
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 462-485 2.49e-10

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 63.13  E-value: 2.49e-10
                         10        20
                 ....*....|....*....|....
gi 499664946 462 GKKVGRNEPCPCGLGKKYKKCHGA 485
Cdd:COG0653  851 GPKVGRNDPCPCGSGKKYKHCHGK 874
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 467-484 4.39e-09

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 51.71  E-value: 4.39e-09
                          10
                  ....*....|....*...
gi 499664946  467 RNEPCPCGLGKKYKKCHG 484
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
PRK02250 PRK02250
hypothetical protein; Provisional
 404-484 8.03e-09

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 54.88  E-value: 8.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499664946 404 AGDTNSEDFILMpcEAWPDDVRDHYqALNEDWRFFDTPQLQQY------EQTVTQFVPPNEAFVGKKVGRNEPCPCGLGK 477
Cdd:PRK02250  83 AGSTPNEGFVEF--KAYFDEEGKRY-CLEERSRFLKENGLWYYidgtfpEEEPEQDPRLNQSVSSLKQGRNDPCICGSGK 159


                 ....*..
gi 499664946 478 KYKKCHG 484
Cdd:PRK02250 160 KFKKCCG 166
PRK01617 PRK01617
hypothetical protein; Provisional
 464-484 7.15e-08

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 51.57  E-value: 7.15e-08
                         10        20
                 ....*....|....*....|.
gi 499664946 464 KVGRNEPCPCGLGKKYKKCHG 484
Cdd:PRK01617 133 QFGRNDPCPCGSGKKFKKCCG 153
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 456-484 1.61e-07

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 49.61  E-value: 1.61e-07
                          10        20
                  ....*....|....*....|....*....
gi 499664946  456 PNEAFVGKKVGRNEPCPCGLGKKYKKCHG 484
Cdd:TIGR04102  80 PKTTTFEKTPNRNDPCPCGSGKKYKKCCG 108
PRK10396 PRK10396
hypothetical protein; Provisional
 443-482 3.14e-07

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 51.29  E-value: 3.14e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 499664946 443 LQQYEQTVTQFVPPNEAFVGK-KVGRNEPCPCGLGKKYKKC 482
Cdd:PRK10396 178 LHAYWMAHPQEKAVQQPIKAEeKVGRNDPCPCGSGKKFKQC 218
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 469-485 3.34e-05

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 46.62  E-value: 3.34e-05
                         10
                 ....*....|....*..
gi 499664946 469 EPCPCGLGKKYKKCHGA 485
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGR 828
PRK00183 PRK00183
hypothetical protein; Provisional
 461-482 3.72e-05

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 44.02  E-value: 3.72e-05
                         10        20
                 ....*....|....*....|..
gi 499664946 461 VGKKVGRNEPCPCGLGKKYKKC 482
Cdd:PRK00183 130 VPLKAGRNDPCPCGSGQKFKKC 151
secA PRK12901
preprotein translocase subunit SecA; Reviewed
 461-484 1.73e-03

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237256 [Multi-domain]  Cd Length: 1112  Bit Score: 41.16  E-value: 1.73e-03
                          10        20
                  ....*....|....*....|....*....
gi 499664946  461 VGKKVGRNEPCPC-----GLGKKYKKCHG 484
Cdd:PRK12901 1071 VEKKIGRNDPVPCqnvdgGSGKKYKFKHA 1099
PRK12318 PRK12318
methionyl aminopeptidase;
465-483 3.07e-03

methionyl aminopeptidase;


Pssm-ID: 183434 [Multi-domain]  Cd Length: 291  Bit Score: 39.42  E-value: 3.07e-03
                         10
                 ....*....|....*....
gi 499664946 465 VGRNEPCPCGLGKKYKKCH 483
Cdd:PRK12318   1 MKRNDPCWCGSGKKWKHCH 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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