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Conserved domains on  [gi|499695573|ref|WP_011376307|]
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NAD(P)H dehydrogenase assembly family protein [Prochlorococcus marinus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3148 super family cl12885
Protein of unknown function (DUF3148); This family of proteins has no known function.
 1-69 9.11e-20

Protein of unknown function (DUF3148); This family of proteins has no known function.


The actual alignment was detected with superfamily member COG5788:

Pssm-ID: 472382  Cd Length: 73  Bit Score: 74.60  E-value: 9.11e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499695573  1 MKFEIKDKVKLIAPVSYLKTSDNMPMLRPPDLVAIEEIGEIISIKSLDTVEVKFRRGSFLIEIDRIERV 69
Cdd:COG5788   3 KEFAIGDKVRLIALPPYLKTADPMPMLRPPDLIAIGEEGIILDRRPGGYWGVRFTRGAFLLESQYLEAV 71
 
Name Accession Description Interval E-value
SipA COG5788
Cyanobacterial/chloroplast protein SipA, regulator of sensor kinase NblS (Hik33), DUF3148 ...
 1-69 9.11e-20

Cyanobacterial/chloroplast protein SipA, regulator of sensor kinase NblS (Hik33), DUF3148 (PF11347) family [Energy production and conversion, Signal transduction mechanisms];


Pssm-ID: 444498  Cd Length: 73  Bit Score: 74.60  E-value: 9.11e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499695573  1 MKFEIKDKVKLIAPVSYLKTSDNMPMLRPPDLVAIEEIGEIISIKSLDTVEVKFRRGSFLIEIDRIERV 69
Cdd:COG5788   3 KEFAIGDKVRLIALPPYLKTADPMPMLRPPDLIAIGEEGIILDRRPGGYWGVRFTRGAFLLESQYLEAV 71
DUF3148 pfam11347
Protein of unknown function (DUF3148); This family of proteins has no known function.
 7-62 8.75e-16

Protein of unknown function (DUF3148); This family of proteins has no known function.


Pssm-ID: 431831  Cd Length: 61  Bit Score: 64.14  E-value: 8.75e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499695573   7 DKVKLIAPVSYLKTSDNMPMLRPPDLVAIEEIGEIISIKSLDTVEVKFRRGSFLIE 62
Cdd:pfam11347  2 DKVRLIELPPYLKTADPMPMLRPPDLVKLGEEGIIIDRRPGDYWAVRFARGAFLLD 57
 
Name Accession Description Interval E-value
SipA COG5788
Cyanobacterial/chloroplast protein SipA, regulator of sensor kinase NblS (Hik33), DUF3148 ...
 1-69 9.11e-20

Cyanobacterial/chloroplast protein SipA, regulator of sensor kinase NblS (Hik33), DUF3148 (PF11347) family [Energy production and conversion, Signal transduction mechanisms];


Pssm-ID: 444498  Cd Length: 73  Bit Score: 74.60  E-value: 9.11e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499695573  1 MKFEIKDKVKLIAPVSYLKTSDNMPMLRPPDLVAIEEIGEIISIKSLDTVEVKFRRGSFLIEIDRIERV 69
Cdd:COG5788   3 KEFAIGDKVRLIALPPYLKTADPMPMLRPPDLIAIGEEGIILDRRPGGYWGVRFTRGAFLLESQYLEAV 71
DUF3148 pfam11347
Protein of unknown function (DUF3148); This family of proteins has no known function.
 7-62 8.75e-16

Protein of unknown function (DUF3148); This family of proteins has no known function.


Pssm-ID: 431831  Cd Length: 61  Bit Score: 64.14  E-value: 8.75e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499695573   7 DKVKLIAPVSYLKTSDNMPMLRPPDLVAIEEIGEIISIKSLDTVEVKFRRGSFLIE 62
Cdd:pfam11347  2 DKVRLIELPPYLKTADPMPMLRPPDLVKLGEEGIIIDRRPGDYWAVRFARGAFLLD 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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