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Conserved domains on  [gi|499728980|ref|WP_011409714|]
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Sec-independent protein translocase protein TatB [Xanthomonas oryzae]

Protein Classification

PRK04654 family protein( domain architecture ID 11480294)

PRK04654 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-211 3.05e-107

sec-independent translocase; Provisional


:

Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 307.12  E-value: 3.05e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNK 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980  81 QQQVEQGARALHDDVSRDIDIRSSATPVATPLELAHADLSASAHVDAAAGAAA---GAGPAPAPAAPVIAQAQPIAPAPH 157
Cdd:PRK04654  81 QQQVEQGARALHDDVSRDIDIRTSATPVATPLELAHADLSASAQVDAAAGAEPgagQAHTPVPAPAPVIAQAQPIAPAPH 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499728980 158 QTLVPAPHDTIVPAPHAAHLTSAPAPPVTVAPVDAGTSASPTPSEPTKIQEKQP 211
Cdd:PRK04654 161 QTLVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-211 3.05e-107

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 307.12  E-value: 3.05e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNK 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980  81 QQQVEQGARALHDDVSRDIDIRSSATPVATPLELAHADLSASAHVDAAAGAAA---GAGPAPAPAAPVIAQAQPIAPAPH 157
Cdd:PRK04654  81 QQQVEQGARALHDDVSRDIDIRTSATPVATPLELAHADLSASAQVDAAAGAEPgagQAHTPVPAPAPVIAQAQPIAPAPH 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499728980 158 QTLVPAPHDTIVPAPHAAHLTSAPAPPVTVAPVDAGTSASPTPSEPTKIQEKQP 211
Cdd:PRK04654 161 QTLVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-68 3.13e-19

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 78.13  E-value: 3.13e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499728980    2 FDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQA 68
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQ 67
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-90 3.04e-16

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 70.35  E-value: 3.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARmqwdsvkqelereleaeelkRSLQDVQASLREA--EDQLR 78
Cdd:COG1826    1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFK--------------------KAANEVKEELDEElkEEELR 60

                         90
                 ....*....|..
gi 499728980  79 NKQQQVEQGARA 90
Cdd:COG1826   61 KSEKEAEELKKA 72
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-33 1.76e-05

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 40.75  E-value: 1.76e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 499728980    4 IGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALG 30
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-211 3.05e-107

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 307.12  E-value: 3.05e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNK 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980  81 QQQVEQGARALHDDVSRDIDIRSSATPVATPLELAHADLSASAHVDAAAGAAA---GAGPAPAPAAPVIAQAQPIAPAPH 157
Cdd:PRK04654  81 QQQVEQGARALHDDVSRDIDIRTSATPVATPLELAHADLSASAQVDAAAGAEPgagQAHTPVPAPAPVIAQAQPIAPAPH 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499728980 158 QTLVPAPHDTIVPAPHAAHLTSAPAPPVTVAPVDAGTSASPTPSEPTKIQEKQP 211
Cdd:PRK04654 161 QTLVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-68 3.13e-19

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 78.13  E-value: 3.13e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499728980    2 FDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQA 68
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQ 67
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-90 3.04e-16

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 70.35  E-value: 3.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARmqwdsvkqelereleaeelkRSLQDVQASLREA--EDQLR 78
Cdd:COG1826    1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFK--------------------KAANEVKEELDEElkEEELR 60

                         90
                 ....*....|..
gi 499728980  79 NKQQQVEQGARA 90
Cdd:COG1826   61 KSEKEAEELKKA 72
PRK01371 PRK01371
Sec-independent protein translocase protein TatB;
1-40 1.02e-08

Sec-independent protein translocase protein TatB;


Pssm-ID: 179287 [Multi-domain]  Cd Length: 137  Bit Score: 52.02  E-value: 1.02e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRAR 40
Cdd:PRK01371   1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLR 40
tatA PRK14861
twin arginine translocase protein A; Provisional
 1-33 3.29e-06

twin arginine translocase protein A; Provisional


Pssm-ID: 237837  Cd Length: 61  Bit Score: 43.03  E-value: 3.29e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14861   2 FSNIGFPGLILILVVALIIFGPKKLPELGKALG 34
tatA PRK14858
twin arginine translocase protein A; Provisional
 1-76 3.40e-06

twin arginine translocase protein A; Provisional


Pssm-ID: 184860  Cd Length: 108  Bit Score: 44.47  E-value: 3.40e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQ 76
Cdd:PRK14858   1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAP 76
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-33 1.76e-05

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 40.75  E-value: 1.76e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 499728980    4 IGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALG 30
tatA PRK14857
TatA/E family twin arginine-targeting protein translocase;
2-33 7.37e-05

TatA/E family twin arginine-targeting protein translocase;


Pssm-ID: 184859  Cd Length: 90  Bit Score: 40.09  E-value: 7.37e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 499728980   2 FDIGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14857   4 FGIGLPEMAVILVIALLVFGPKKLPEIGRSLG 35
tatB PRK00182
Sec-independent protein translocase subunit TatB;
1-39 9.98e-04

Sec-independent protein translocase subunit TatB;


Pssm-ID: 234681  Cd Length: 160  Bit Score: 38.27  E-value: 9.98e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 499728980   1 MF-DIGVGELTLIAVVALVVLGPERLP---KAARFAGLWVRRA 39
Cdd:PRK00182   1 MFsSVGWGEILLLLIVGLIVIGPERLPrliEDVRAALLAARTA 43
tatA PRK14860
twin arginine translocase protein A; Provisional
 1-37 1.70e-03

twin arginine translocase protein A; Provisional


Pssm-ID: 184862  Cd Length: 64  Bit Score: 35.87  E-value: 1.70e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 499728980   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVR 37
Cdd:PRK14860   1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIR 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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