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Conserved domains on  [gi|499729860|ref|WP_011410594|]
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KilA-N domain-containing protein [Sodalis glossinidius]

Protein Classification

KilA-N domain-containing protein( domain architecture ID 10516234)

KilA-N domain-containing protein is a DNA-binding protein such as Saccharomyces cerevisiae transcription factor PHD1 that functions in pseudohyphal growth

CATH:  3.10.260.10
Gene Ontology:  GO:0003700|GO:0043565
PubMed:  11897024
SCOP:  4001103

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KilA-N pfam04383
KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved ...
 4-105 1.53e-17

KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.


:

Pssm-ID: 367917  Cd Length: 107  Bit Score: 75.82  E-value: 1.53e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499729860    4 LIVIENTVVRQDAFGRYCLNDLHRAAvaqgkATESQRPSNFLKSEGVSNFVQKASEATKIASVNII-----KGGIESGSW 78
Cdd:pfam04383   2 QYNDFEIIIRRDKDGYINATKLCKAA-----GEKTKRFRNWLRLESTKELIEELEEENNIPKIITIigrkgKGGRLQGTY 76

                          90       100
                  ....*....|....*....|....*..
gi 499729860   79 AVELIAIRYAAWIDPAFEVQVYERFRD 105
Cdd:pfam04383  77 VHPDLALAIASWISPEFALKVSKIIDE 103
 
Name Accession Description Interval E-value
KilA-N pfam04383
KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved ...
 4-105 1.53e-17

KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.


Pssm-ID: 367917  Cd Length: 107  Bit Score: 75.82  E-value: 1.53e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499729860    4 LIVIENTVVRQDAFGRYCLNDLHRAAvaqgkATESQRPSNFLKSEGVSNFVQKASEATKIASVNII-----KGGIESGSW 78
Cdd:pfam04383   2 QYNDFEIIIRRDKDGYINATKLCKAA-----GEKTKRFRNWLRLESTKELIEELEEENNIPKIITIigrkgKGGRLQGTY 76

                          90       100
                  ....*....|....*....|....*..
gi 499729860   79 AVELIAIRYAAWIDPAFEVQVYERFRD 105
Cdd:pfam04383  77 VHPDLALAIASWISPEFALKVSKIIDE 103
 
Name Accession Description Interval E-value
KilA-N pfam04383
KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved ...
 4-105 1.53e-17

KilA-N domain; The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.


Pssm-ID: 367917  Cd Length: 107  Bit Score: 75.82  E-value: 1.53e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499729860    4 LIVIENTVVRQDAFGRYCLNDLHRAAvaqgkATESQRPSNFLKSEGVSNFVQKASEATKIASVNII-----KGGIESGSW 78
Cdd:pfam04383   2 QYNDFEIIIRRDKDGYINATKLCKAA-----GEKTKRFRNWLRLESTKELIEELEEENNIPKIITIigrkgKGGRLQGTY 76

                          90       100
                  ....*....|....*....|....*..
gi 499729860   79 AVELIAIRYAAWIDPAFEVQVYERFRD 105
Cdd:pfam04383  77 VHPDLALAIASWISPEFALKVSKIIDE 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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