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Conserved domains on  [gi|499805590|ref|WP_011486324|]
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polymer-forming cytoskeletal protein [Polaromonas sp. JS666]

Protein Classification

polymer-forming cytoskeletal protein( domain architecture ID 10004140)

polymer-forming cytoskeletal protein similar to Caulobacter crescentus cytoskeletal bactofilin BacA that mediates polar localization of a cell wall synthase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
62-180 1.28e-14

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


:

Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 66.85  E-value: 1.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499805590  62 KDIDADKVLLIPAGVRIKSDLVSNGNaVVISGVVEGRINAGSApVIVKQGGEVVGAIESDEyVVVAGTVtsvekDGDaVV 141
Cdd:COG1664    7 AAESEGITTVIGEGTTIKGDITSEGD-LRIDGTVEGDITAEGT-LVIGEGGVVEGDIEADN-VVINGTV-----EGN-IT 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 499805590 142 TKGLLILAATGSIKGTVAYGRQRAYEGGTLSGRAVPFAE 180
Cdd:COG1664   78 ASEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGED 116
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
62-180 1.28e-14

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 66.85  E-value: 1.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499805590  62 KDIDADKVLLIPAGVRIKSDLVSNGNaVVISGVVEGRINAGSApVIVKQGGEVVGAIESDEyVVVAGTVtsvekDGDaVV 141
Cdd:COG1664    7 AAESEGITTVIGEGTTIKGDITSEGD-LRIDGTVEGDITAEGT-LVIGEGGVVEGDIEADN-VVINGTV-----EGN-IT 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 499805590 142 TKGLLILAATGSIKGTVAYGRQRAYEGGTLSGRAVPFAE 180
Cdd:COG1664   78 ASEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGED 116
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 78-174 1.33e-13

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 63.21  E-value: 1.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499805590   78 IKSDLVSNGNaVVISGVVEGRINAGSApVIVKQGGEVVGAIESDEyVVVAGTVTsvekdGDaVVTKGLLILAATGSIKGT 157
Cdd:pfam04519   1 IEGDISFEGD-LRIDGKVEGNITSKGT-LVIGEGGRVEGDIKAES-VVIAGTVE-----GN-ITASEKLELLSTARVEGD 71

                          90
                  ....*....|....*..
gi 499805590  158 VAYGRQRAYEGGTLSGR 174
Cdd:pfam04519  72 IKTGSLEIEEGAVFEGR 88
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
62-180 1.28e-14

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 66.85  E-value: 1.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499805590  62 KDIDADKVLLIPAGVRIKSDLVSNGNaVVISGVVEGRINAGSApVIVKQGGEVVGAIESDEyVVVAGTVtsvekDGDaVV 141
Cdd:COG1664    7 AAESEGITTVIGEGTTIKGDITSEGD-LRIDGTVEGDITAEGT-LVIGEGGVVEGDIEADN-VVINGTV-----EGN-IT 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 499805590 142 TKGLLILAATGSIKGTVAYGRQRAYEGGTLSGRAVPFAE 180
Cdd:COG1664   78 ASEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGED 116
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 78-174 1.33e-13

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 63.21  E-value: 1.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499805590   78 IKSDLVSNGNaVVISGVVEGRINAGSApVIVKQGGEVVGAIESDEyVVVAGTVTsvekdGDaVVTKGLLILAATGSIKGT 157
Cdd:pfam04519   1 IEGDISFEGD-LRIDGKVEGNITSKGT-LVIGEGGRVEGDIKAES-VVIAGTVE-----GN-ITASEKLELLSTARVEGD 71

                          90
                  ....*....|....*..
gi 499805590  158 VAYGRQRAYEGGTLSGR 174
Cdd:pfam04519  72 IKTGSLEIEEGAVFEGR 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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