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Conserved domains on  [gi|499835742|ref|WP_011516476|]
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DUF2726 domain-containing protein [Cupriavidus metallidurans]

Protein Classification

DUF2726 domain-containing protein( domain architecture ID 10566842)

DUF2726 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2726 pfam10881
Protein of unknown function (DUF2726); This bacterial family of proteins has no known function.
 35-152 8.42e-36

Protein of unknown function (DUF2726); This bacterial family of proteins has no known function.


:

Pssm-ID: 431528  Cd Length: 126  Bit Score: 121.27  E-value: 8.42e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499835742   35 RRQLMTEREVGFFHKLKKSLPQSH-LFAQVSMSAIVDVKRG-----GLAARGRFSQKYVDFVVCS-SNCRVLYVIELDDK 107
Cdd:pfam10881   1 RRPLFSPAERAFFHALKKAVGDRYeIFAKVSLSDILSVTKGpgrsnWQRAFNRISAKRFDFLLCDkADLTPVLAIELDGA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499835742  108 SHNSAAAQKADAVKNEILLAAGIPIKRYSSVKV-DEATLARDFQEA 152
Cdd:pfam10881  81 SHYDAKAQKRDAFKNAACESAGIPLLRLSASKSyDVSELRRQIAAL 126
 
Name Accession Description Interval E-value
DUF2726 pfam10881
Protein of unknown function (DUF2726); This bacterial family of proteins has no known function.
 35-152 8.42e-36

Protein of unknown function (DUF2726); This bacterial family of proteins has no known function.


Pssm-ID: 431528  Cd Length: 126  Bit Score: 121.27  E-value: 8.42e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499835742   35 RRQLMTEREVGFFHKLKKSLPQSH-LFAQVSMSAIVDVKRG-----GLAARGRFSQKYVDFVVCS-SNCRVLYVIELDDK 107
Cdd:pfam10881   1 RRPLFSPAERAFFHALKKAVGDRYeIFAKVSLSDILSVTKGpgrsnWQRAFNRISAKRFDFLLCDkADLTPVLAIELDGA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499835742  108 SHNSAAAQKADAVKNEILLAAGIPIKRYSSVKV-DEATLARDFQEA 152
Cdd:pfam10881  81 SHYDAKAQKRDAFKNAACESAGIPLLRLSASKSyDVSELRRQIAAL 126
YcjD COG2852
Very-short-patch-repair endonuclease [Replication, recombination and repair];
87-137 2.72e-04

Very-short-patch-repair endonuclease [Replication, recombination and repair];


Pssm-ID: 442100  Cd Length: 104  Bit Score: 38.69  E-value: 2.72e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 499835742  87 VDFVVCSsnCRVlyVIELDDKSHNSAAAQKADAVKNEILLAAGIPIKRYSS 137
Cdd:COG2852   37 VDFYCPE--ARL--AIEVDGGYHGSPEQRERDRRRDAYLERLGWRVLRFWN 83
 
Name Accession Description Interval E-value
DUF2726 pfam10881
Protein of unknown function (DUF2726); This bacterial family of proteins has no known function.
 35-152 8.42e-36

Protein of unknown function (DUF2726); This bacterial family of proteins has no known function.


Pssm-ID: 431528  Cd Length: 126  Bit Score: 121.27  E-value: 8.42e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499835742   35 RRQLMTEREVGFFHKLKKSLPQSH-LFAQVSMSAIVDVKRG-----GLAARGRFSQKYVDFVVCS-SNCRVLYVIELDDK 107
Cdd:pfam10881   1 RRPLFSPAERAFFHALKKAVGDRYeIFAKVSLSDILSVTKGpgrsnWQRAFNRISAKRFDFLLCDkADLTPVLAIELDGA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499835742  108 SHNSAAAQKADAVKNEILLAAGIPIKRYSSVKV-DEATLARDFQEA 152
Cdd:pfam10881  81 SHYDAKAQKRDAFKNAACESAGIPLLRLSASKSyDVSELRRQIAAL 126
YcjD COG2852
Very-short-patch-repair endonuclease [Replication, recombination and repair];
87-137 2.72e-04

Very-short-patch-repair endonuclease [Replication, recombination and repair];


Pssm-ID: 442100  Cd Length: 104  Bit Score: 38.69  E-value: 2.72e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 499835742  87 VDFVVCSsnCRVlyVIELDDKSHNSAAAQKADAVKNEILLAAGIPIKRYSS 137
Cdd:COG2852   37 VDFYCPE--ARL--AIEVDGGYHGSPEQRERDRRRDAYLERLGWRVLRFWN 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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