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Conserved domains on  [gi|499968391|ref|WP_011649109|]
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MULTISPECIES: ABC transporter permease [Rhizobium]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-321 6.49e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 365.16  E-value: 6.49e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVI-GNPVDILINPDANQAERALVIAHYGLDQPLWKQYLLFLQGLLHGDFGNS 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  80 FVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVELG 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 160 WLPTNGRGPTRELLGaqwsfltgDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVL 239
Cdd:COG0601  161 WLPVSGRVSPWEDFL--------DALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 240 KNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:COG0601  233 RNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312


                 ..
gi 499968391 320 LE 321
Cdd:COG0601  313 LG 314
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-321 6.49e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 365.16  E-value: 6.49e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVI-GNPVDILINPDANQAERALVIAHYGLDQPLWKQYLLFLQGLLHGDFGNS 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  80 FVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVELG 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 160 WLPTNGRGPTRELLGaqwsfltgDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVL 239
Cdd:COG0601  161 WLPVSGRVSPWEDFL--------DALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 240 KNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:COG0601  233 RNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312


                 ..
gi 499968391 320 LE 321
Cdd:COG0601  313 LG 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-319 1.02e-73

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 229.60  E-value: 1.02e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVI-GNPVDILINPDANQAERALVIAHYGLDQPLWKQYLLFLQGLLHGDFGNS 79
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLpGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  80 FVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVELG 159
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 160 WLPTNGrgptrellgaqwsfltGDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVL 239
Cdd:PRK15081 161 WLPTVG----------------ADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGL 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 240 KNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:PRK15081 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-319 1.69e-72

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 226.57  E-value: 1.69e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391    1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVIgnPVDilinpdanQAERALVIAH--------------YGLDQPLWKQYLL 66
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLG--PSD--------PAEDYLRLSHipptdeaiadmrhsLGLDQPLYVQYFH 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   67 FLQGLLHGDFGNSFVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWV 146
Cdd:TIGR02789  71 WLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  147 GLMLIMVFSVELGWLPTNGRGptrellgaqwsfltgdGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAK 226
Cdd:TIGR02789 151 AFLLVWGFSVYLNLLPTNGAG----------------TWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVR 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  227 GLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFI 306
Cdd:TIGR02789 215 GIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLI 294

                         330
                  ....*....|...
gi 499968391  307 IDICYTLLDPRVR 319
Cdd:TIGR02789 295 VDLFQALLDPRIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-319 3.74e-24

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 96.98  E-value: 3.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  112 GLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVelgwlptngrgptrellgaqwsfltgDGIRHLLLP 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL--------------------------SILGHGILP 54

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  192 AFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWP 271
Cdd:pfam00528  55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 499968391  272 GMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-309 1.33e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 1.33e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  94 LPATLELAITALVIALLFGLPLGLYAGLYPNRISsKLIMSGSILGFSLPTFWVGLMLIMVFSVELGWlptngrgptrell 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLD-RLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 174 gaqwsfltgDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVTIIGLE 253
Cdd:cd06261   67 ---------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499968391 254 FGSLIAFSVVTESIFawpGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDI 309
Cdd:cd06261  138 FARALGEFALVSFLG---GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-321 6.49e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 365.16  E-value: 6.49e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVI-GNPVDILINPDANQAERALVIAHYGLDQPLWKQYLLFLQGLLHGDFGNS 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  80 FVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVELG 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 160 WLPTNGRGPTRELLGaqwsfltgDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVL 239
Cdd:COG0601  161 WLPVSGRVSPWEDFL--------DALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 240 KNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:COG0601  233 RNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312


                 ..
gi 499968391 320 LE 321
Cdd:COG0601  313 LG 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-319 1.02e-73

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 229.60  E-value: 1.02e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVI-GNPVDILINPDANQAERALVIAHYGLDQPLWKQYLLFLQGLLHGDFGNS 79
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLpGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  80 FVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVELG 159
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 160 WLPTNGrgptrellgaqwsfltGDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVL 239
Cdd:PRK15081 161 WLPTVG----------------ADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGL 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 240 KNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:PRK15081 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-319 1.69e-72

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 226.57  E-value: 1.69e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391    1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVIgnPVDilinpdanQAERALVIAH--------------YGLDQPLWKQYLL 66
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLG--PSD--------PAEDYLRLSHipptdeaiadmrhsLGLDQPLYVQYFH 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   67 FLQGLLHGDFGNSFVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWV 146
Cdd:TIGR02789  71 WLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  147 GLMLIMVFSVELGWLPTNGRGptrellgaqwsfltgdGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAK 226
Cdd:TIGR02789 151 AFLLVWGFSVYLNLLPTNGAG----------------TWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVR 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  227 GLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFI 306
Cdd:TIGR02789 215 GIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLI 294

                         330
                  ....*....|...
gi 499968391  307 IDICYTLLDPRVR 319
Cdd:TIGR02789 295 VDLFQALLDPRIR 307
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-324 7.05e-72

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 224.96  E-value: 7.05e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNV-IGNP-VDILINPDANQAERALVIAHY--GLDQPLWKQYLLFLQGLLHGDF 76
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLgTGDPaLDYLRLSNLPPTPEMLASTRTmlGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  77 GNSFVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSV 156
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 157 ELGWLPTNGRGptrellgaqwsfltgdGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISV 236
Cdd:PRK10352 161 YLQWLPAMGYG----------------GWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERR 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 237 HVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDP 316
Cdd:PRK10352 225 HILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDP 304


                 ....*...
gi 499968391 317 RVRLEGKA 324
Cdd:PRK10352 305 RIRRHEGA 312
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-321 1.22e-69

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 219.32  E-value: 1.22e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIgvnvignpvdILINPDANQAEralviahyglDQPLWKQYLLFLQGLLHGDFGNSF 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFS----------LLYRDPLNPLS----------DASLFSGYLFYLQNLLQGDFGISS 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  81 VYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVELGW 160
Cdd:COG4168   61 INGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGW 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 161 LPTNGRgptRELLgAQWSFLTG-------------------DGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVK 221
Cdd:COG4168  141 LPVSGR---YNLL-YEIPPVTGfalidawlsdspyrlkaiqSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIK 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 222 FARAKGLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFV 301
Cdd:COG4168  217 AAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVI 296

                        330       340
                 ....*....|....*....|
gi 499968391 302 VLNFIIDICYTLLDPRVRLE 321
Cdd:COG4168  297 IVNILSDILGALLNPLKRKE 316
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-319 9.90e-66

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 210.05  E-value: 9.90e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQALFVIVAMTIIVFIGVNVI-GNPVDILINPDANQAER-ALVIAHYGLDQPLWKQYLLFLQGLLHGDFGN 78
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIpGDPVMIMAGERGISPERhAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  79 SFVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVEL 158
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 159 GWLPTNGRGPTRELLGAQWSfLTG----------------DGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKF 222
Cdd:PRK10914 161 NLTPVSGRVSDMVFLDDSNP-LTGfmlidtaiwgedgnfiDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 223 ARAKGLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVV 302
Cdd:PRK10914 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIIL 319

                        330
                 ....*....|....*..
gi 499968391 303 LNFIIDICYTLLDPRVR 319
Cdd:PRK10914 320 VNLLVDLLYGVVNPRIR 336
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-319 4.87e-49

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 166.01  E-value: 4.87e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391   1 MVTSIIRRLIQAL-FVIVAMTIIVFIGVNVIGNPVdilinpdanQAERAL-------VIAHYGLDQPLWKQYLLFLQGLL 72
Cdd:PRK09471   1 MLKFILRRCLEAIpTLFILITISFFMMRLAPGSPF---------TGERTLppevmanIEAKYHLNDPIMTQYFSYLKQLA 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  73 HGDFGNSFVYGRPALG-LILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLI 151
Cdd:PRK09471  72 HGDFGPSFKYKDYSVNdLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLV 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 152 MVFSVELGWLPTNGrgptrellgaqWSfltGDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRER 231
Cdd:PRK09471 152 LIFAITLHWLPGGG-----------WN---GGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMR 217

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 232 RIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICY 311
Cdd:PRK09471 218 RIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLY 297


                 ....*...
gi 499968391 312 TLLDPRVR 319
Cdd:PRK09471 298 AVIDPKIR 305
PRK15110 PRK15110
peptide ABC transporter permease SapB;
60-316 7.69e-49

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 166.02  E-value: 7.69e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  60 LWKQYLLFLQGLLHGDFGNSFVYGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSKLIMSGSILGF 139
Cdd:PRK15110  40 LWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGF 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 140 SLPTFWVGLMLIMVFSVELGWLPTNGR----GPTRELLG----------AQW-SFLTGDGIRHLLLPAFNLALFKTSLIL 204
Cdd:PRK15110 120 SIPVFWLALLLTLFFSLTLGWLPVSGRfdllYEVKPVTGfalidawlsdSPWrDEMIMSAIRHMILPVITLAVAPTTEVI 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 205 RLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWPGMGKLIIDSINLL 284
Cdd:PRK15110 200 RLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQ 279

                        250       260       270
                 ....*....|....*....|....*....|..
gi 499968391 285 DRPVIVAYLMMMVLLFVVLNFIIDICYTLLDP 316
Cdd:PRK15110 280 DYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 52-322 1.38e-32

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 123.76  E-value: 1.38e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  52 AHYGLDQPLWKQYLLFLQGLLHGDFGNSFVYGRPALGLILERLPATLELAITALVIALLFGLPLG----LYAGLYPNRIS 127
Cdd:COG4174   88 KQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGirkaVRDGSRFDVWT 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 128 SKLImsgsILGFSLPTFWVGLMLIMVFS--VELGWLPTNGrgptreLLGAQWSFLT-----GDGIRHLLLPAFNLAL--F 198
Cdd:COG4174  168 STVI----IVGYAIPGFLFAILLIVLFAggSYFDWFPLRG------LTSDNWDQLSwwgkiLDYLWHLTLPVTAMVIggF 237

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 199 KTSLIlrLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVT-----IIGLEFGSliafSVVTESIFAWPGM 273
Cdd:COG4174  238 ATLTL--LTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAgfpaaFIGAFFTG----SLLIETIFSLDGL 311

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 499968391 274 GKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVRLEG 322
Cdd:COG4174  312 GLLGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEA 360
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 54-323 3.21e-29

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 114.84  E-value: 3.21e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  54 YGLDQPLWKQYLLFLQGLLHGDFGNSFVYGRPALGLILERLPATLELAITALVIALLFGLPLGL----YAGLYPNRISSK 129
Cdd:PRK15133  93 YGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIrkavRNGSRFDVWSSA 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 130 LImsgsILGFSLPTFWVGLMLIMVFS--VELGWLPTNGrgptreLLGAQWSFL-----TGDGIRHLLLPAFNLALFKTSL 202
Cdd:PRK15133 173 FI----IIGYAIPAFLFAILLIVFFAggSYFDLFPLRG------LVSANFDSLpwyqkITDYLWHITLPVLATVIGGFAA 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 203 ILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVTIIGLEFGSLI-AFSVVTESIFAWPGMGKLIIDSI 281
Cdd:PRK15133 243 LTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFfTGSLLIEVMFSLNGLGLLGYEAT 322

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 499968391 282 NLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVRLEGK 323
Cdd:PRK15133 323 VSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-319 3.74e-24

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 96.98  E-value: 3.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  112 GLPLGLYAGLYPNRISSKLIMSGSILGFSLPTFWVGLMLIMVFSVelgwlptngrgptrellgaqwsfltgDGIRHLLLP 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL--------------------------SILGHGILP 54

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  192 AFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVTIIGLEFGSLIAFSVVTESIFAWP 271
Cdd:pfam00528  55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 499968391  272 GMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDICYTLLDPRVR 319
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-309 1.33e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 1.33e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  94 LPATLELAITALVIALLFGLPLGLYAGLYPNRISsKLIMSGSILGFSLPTFWVGLMLIMVFSVELGWlptngrgptrell 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLD-RLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 174 gaqwsfltgDGIRHLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKNLMIPVVTIIGLE 253
Cdd:cd06261   67 ---------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499968391 254 FGSLIAFSVVTESIFawpGMGKLIIDSINLLDRPVIVAYLMMMVLLFVVLNFIIDI 309
Cdd:cd06261  138 FARALGEFALVSFLG---GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 82-258 4.48e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 56.27  E-value: 4.48e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391  82 YGRPALGLILERLPATLELAITALVIALLFGLPLGLYAGLYPNRISSkLIMSGSILGFSLPTFWVGLMLIMVFsvelgwl 161
Cdd:COG1173   66 LGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDA-VLMRLVDVLLAFPSLLLAIALVAVL------- 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391 162 ptnGRGptrellgaqwsfltgdgirhLLLPAFNLALFKTSLILRLTRAGVQEVLPQDYVKFARAKGLRERRIISVHVLKN 241
Cdd:COG1173  138 ---GPG--------------------LLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194

                        170
                 ....*....|....*..
gi 499968391 242 LMIPVVTIIGLEFGSLI 258
Cdd:COG1173  195 VLPPLIVQATLGIASAI 211
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-101 6.72e-09

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 52.99  E-value: 6.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499968391    1 MVTSIIRRLIQA---LFVIVAMTIIVFIGVnvignPVDI-------LINPDA-NQAERALviahyGLDQPLWKQYLLFLQ 69
Cdd:pfam19300   1 MLRFLVRRTLGAvviLLIISAVTFFLFYAI-----PRDParlacgkNCTPETlALIRHNL-----GLDKPIPVQYWHFLS 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 499968391   70 GLLHGD------------FGNSFVYGRPALGLILERLPATLELA 101
Cdd:pfam19300  71 GIFAGRdfgavghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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