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flagellar biosynthesis protein FlhA [Listeria welshimeri]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10012637 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
11-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 713.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 F AIL I a VSFVIAL I V PLPPF V LDL V L VTIL A F SVL VYMR A TS I KDWNELKS FP S LLL LMGIF R VSI N IST TR A IL TT G D - 89
Cdd:PRK06012 23 V AIL V - LAILAMM I L PLPPF L LDL L L TFNI A L SVL ILLV A LF I QRPLDFSA FP T LLL ITTLL R LAL N VAS TR L IL LE G H e 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 ---- P G Q VI KQ FG N FV I G S NFVVGIV I FIIL IVFQ F I V - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EAK 164
Cdd:PRK06012 102 gtda A G K VI EA FG H FV V G G NFVVGIV V FIIL VIIN F V V i TK G AG R I AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EAK 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 165 EK R AY L NM E TE FYGAMDGA G KFVKGD VLFTV L LA V V NI VF GLI V G M VQ G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAM 244
Cdd:PRK06012 182 KR R KE L QQ E AD FYGAMDGA S KFVKGD AIAGI L IT V I NI IG GLI I G V VQ H G M SFGEAA ET YT L LTIGDG L VSQI PA LL IST 261
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 245 S AG V IVTRV fd G SD DN V AVG I FKE L MQ N SIVV Y TLSAMFI L M G VFSPL P AI PF VGIGVV LG IIG YR TQFNL KK KEQ L EL E 324
Cdd:PRK06012 262 A AG I IVTRV -- S SD GD V GEQ I VGQ L FA N PKAL Y IAAGVLF L L G LVPGM P HL PF LLLAGL LG FLA YR LRKRE KK AAE L AA E 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 325 KEM E liqset NS A EAEHNQAFGAAREKF P VVV E L G LNIAA LV KQKMN GE t AK D KVVLM RK S I L Q D LG IG VP GINFK DN TS 404
Cdd:PRK06012 340 EAE E ------ EE A AEPEEESWDDVLPVD P LEL E V G YGLIP LV DENQG GE - LL D RIRSI RK K I A Q E LG FL VP PVRIR DN LQ 412
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 405 FQ P r GK Y E IK V KGV A V A SG V L KA G H LLA LKTP GV MMD L DAE PTK D P I FG EDGY WI LPGEL E D AQ MKN Y Q V LE P LSILI TH 484
Cdd:PRK06012 413 LP P - NE Y R IK I KGV E V G SG E L RP G R LLA MNPG GV DGE L PGI PTK E P A FG LPAV WI DEALR E Q AQ LLG Y T V VD P STVVA TH 491
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 485 L DV V LRKNLH ELL M RQ QIKD L I D G LA D E NQI L ID E IKK K EIDYSLI Q G VL RQ LLKE GI S V RDL P TI V E GII D GQT I y PN D 564
Cdd:PRK06012 492 L TE V IKNHAA ELL G RQ EVQQ L L D R LA K E YPK L VE E LVP K VLSLGTL Q K VL QN LLKE RV S I RDL R TI L E TLA D YAP I - TK D 570
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 565 L D GI T AF VR E R ISKV I CE Q A K NQ DG KIYALL L QDSI E - MDTEIVNTPYY G YA L NWALDKELPII Q KVRDTVNKAQLT G RE 643
Cdd:PRK06012 571 P D EL T EH VR Q R LGRQ I VQ Q Y K GE DG ELPVIT L DPEL E q LLLQSLQGTGG G SY L ALEPGLAERLL Q SLQEALERQEMK G EP 650
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 500020773 644 PV I L TRRK d F R FGFV R V LER YQLDV PVLS IS E LSPET E VEQIALIEPT 691
Cdd:PRK06012 651 PV L L VSPA - L R PYLR R L LER FLPQL PVLS YN E IPDNI E IRIVGTVGIN 697
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
11-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 713.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 F AIL I a VSFVIAL I V PLPPF V LDL V L VTIL A F SVL VYMR A TS I KDWNELKS FP S LLL LMGIF R VSI N IST TR A IL TT G D - 89
Cdd:PRK06012 23 V AIL V - LAILAMM I L PLPPF L LDL L L TFNI A L SVL ILLV A LF I QRPLDFSA FP T LLL ITTLL R LAL N VAS TR L IL LE G H e 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 ---- P G Q VI KQ FG N FV I G S NFVVGIV I FIIL IVFQ F I V - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EAK 164
Cdd:PRK06012 102 gtda A G K VI EA FG H FV V G G NFVVGIV V FIIL VIIN F V V i TK G AG R I AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EAK 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 165 EK R AY L NM E TE FYGAMDGA G KFVKGD VLFTV L LA V V NI VF GLI V G M VQ G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAM 244
Cdd:PRK06012 182 KR R KE L QQ E AD FYGAMDGA S KFVKGD AIAGI L IT V I NI IG GLI I G V VQ H G M SFGEAA ET YT L LTIGDG L VSQI PA LL IST 261
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 245 S AG V IVTRV fd G SD DN V AVG I FKE L MQ N SIVV Y TLSAMFI L M G VFSPL P AI PF VGIGVV LG IIG YR TQFNL KK KEQ L EL E 324
Cdd:PRK06012 262 A AG I IVTRV -- S SD GD V GEQ I VGQ L FA N PKAL Y IAAGVLF L L G LVPGM P HL PF LLLAGL LG FLA YR LRKRE KK AAE L AA E 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 325 KEM E liqset NS A EAEHNQAFGAAREKF P VVV E L G LNIAA LV KQKMN GE t AK D KVVLM RK S I L Q D LG IG VP GINFK DN TS 404
Cdd:PRK06012 340 EAE E ------ EE A AEPEEESWDDVLPVD P LEL E V G YGLIP LV DENQG GE - LL D RIRSI RK K I A Q E LG FL VP PVRIR DN LQ 412
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 405 FQ P r GK Y E IK V KGV A V A SG V L KA G H LLA LKTP GV MMD L DAE PTK D P I FG EDGY WI LPGEL E D AQ MKN Y Q V LE P LSILI TH 484
Cdd:PRK06012 413 LP P - NE Y R IK I KGV E V G SG E L RP G R LLA MNPG GV DGE L PGI PTK E P A FG LPAV WI DEALR E Q AQ LLG Y T V VD P STVVA TH 491
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 485 L DV V LRKNLH ELL M RQ QIKD L I D G LA D E NQI L ID E IKK K EIDYSLI Q G VL RQ LLKE GI S V RDL P TI V E GII D GQT I y PN D 564
Cdd:PRK06012 492 L TE V IKNHAA ELL G RQ EVQQ L L D R LA K E YPK L VE E LVP K VLSLGTL Q K VL QN LLKE RV S I RDL R TI L E TLA D YAP I - TK D 570
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 565 L D GI T AF VR E R ISKV I CE Q A K NQ DG KIYALL L QDSI E - MDTEIVNTPYY G YA L NWALDKELPII Q KVRDTVNKAQLT G RE 643
Cdd:PRK06012 571 P D EL T EH VR Q R LGRQ I VQ Q Y K GE DG ELPVIT L DPEL E q LLLQSLQGTGG G SY L ALEPGLAERLL Q SLQEALERQEMK G EP 650
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 500020773 644 PV I L TRRK d F R FGFV R V LER YQLDV PVLS IS E LSPET E VEQIALIEPT 691
Cdd:PRK06012 651 PV L L VSPA - L R PYLR R L LER FLPQL PVLS YN E IPDNI E IRIVGTVGIN 697
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
11-689
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 679.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 FAILI a VSFVIAL I V PLPPF V LDL V L VTIL A F S V L VYMR A TS IK DWNELKS FP S LLL LMGI FR V S I N IST TR A IL TT G -- 88
Cdd:COG1298 3 VPLGV - IAILAMM I L PLPPF L LDL L L AFNI A L S L L ILLV A LY IK RPLDFSV FP T LLL ITTL FR L S L N VAS TR L IL LE G he 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 89 --- DP G Q VI KQ FG N FV I G S N F VVG I V I F I IL IVFQ F I V - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EA K 164
Cdd:COG1298 82 gtd AA G K VI EA FG E FV V G G N Y VVG L V V F L IL VIIN F V V i TK G AG R I AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EA R 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 165 EK R AYLNM E TE FYGAMDGA G KFV K GD VLFTV L LAVV NI VF GLI V G MV Q G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAM 244
Cdd:COG1298 162 RR R EEIQR E AD FYGAMDGA S KFV R GD AIAGI L ITLI NI IG GLI I G VL Q H G M SFGEAA QT YT L LTIGDG L VSQI PA LL IST 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 245 S AG V IVTR V fd GS DDNVAVGIFKE L MQ N SIVV Y TLSAMFI L M G VFSPL P AI PF VGIGVV LG IIG YR TQFNL K KK E QL E LE 324
Cdd:COG1298 242 A AG I IVTR A -- GS EGDLGEQLSGQ L FA N PKAL Y IAAGVLG L L G LIPGM P HL PF LLLAAL LG GLA YR LKKRQ K EE E AE E AA 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 325 KE meliq S E TNS A EAEHNQAFGAAREKF P VVV ELG LNIAA LV KQKMN G ETA k D KVVLM R KSIL Q D LG IG VP GINFK DN TS 404
Cdd:COG1298 320 AA ----- A E AEA A AEPAEESVDDLLPVD P LEL ELG YGLIP LV DESQG G DLL - D RIKGI R RQLA Q E LG FV VP PVRIR DN LQ 393
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 405 FQ P r GK Y E IK V KGV A VA S G V L KAGH LLA LKTP GV MMD L DAE PTK D P I FG EDGY WI L P GEL E D A QMKN Y Q V LE P LSILI TH 484
Cdd:COG1298 394 LK P - NE Y R IK I KGV E VA R G E L RPDR LLA INPG GV TGE L PGI PTK E P A FG LPAV WI D P EQR E E A ELLG Y T V VD P STVIA TH 472
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 485 L DV V LRKNLH ELL M RQ QIKD L I D G L AD E NQI L ID E IKK K EIDYSLI Q G VL RQ LL K E GI S V RDL P TI V E GII D GQT i YPN D 564
Cdd:COG1298 473 L SE V IKRHAA ELL G RQ EVQQ L L D R L KK E YPK L VE E LVP K LLSLGEL Q K VL QN LL R E RV S I RDL R TI L E TLA D YAP - RTK D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 565 L D GI T AF VR ERISKV I CE Q AKNQ DG KIYALL L QDSI E MD - T E IVNTPYY G YA L NWALDKELPII Q KVRDT V N K AQLT G RE 643
Cdd:COG1298 552 P D LL T EH VR QALGRQ I VQ Q YAGP DG ELPVIT L DPEL E QL l L E SLQQTEQ G SY L ALDPGLAQRLL Q SLAEA V E K LEAQ G EP 631
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 500020773 644 PV I L T r RKDF R FGFV R V LER YQL D V PVLS IS E LS P ET E V E QIALIE 689
Cdd:COG1298 632 PV L L V - SPQL R PYLR R L LER FLP D L PVLS YN E IP P DV E I E SVGTVG 676
FHIPEP
pfam00771 FHIPEP family;
20-679
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 662.16
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 20 VIAL I V PLPPF V LDL V L VTIL A F S V L VYMR A TS IK DWNELKS FP S LLL LMGI FR VSI N IST TR A IL TT G D -- P G Q VI KQ F 97
Cdd:pfam00771 2 LAMM I L PLPPF L LDL L L AFNI A L S L L ILLV A LY IK RPLDFSV FP T LLL ITTL FR LAL N VAS TR L IL LH G H ea A G K VI EA F 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 98 G N FV I G S N F VVG I V I F I IL IVF QFIV - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EA KEK R AY L NM E TE F 176
Cdd:pfam00771 82 G Q FV V G G N Y VVG L V V F L IL VIV QFIV i TK G AE R V AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EA RRR R EE L QR E AD F 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 177 YGAMDGA G KFVKGD VLFTVLLAVV NI VF GLI V G MV Q G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAMS AG V IVTRV fd G 256
Cdd:pfam00771 162 YGAMDGA S KFVKGD AIAGIIITLI NI IG GLI I G VL Q H G M SFGEAA QT YT L LTIGDG L VSQI PA LL ISTA AG I IVTRV -- A 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 257 S DD N VAVG I FKE L MQ N SIVV Y TLSAMFI L M G VFSP LP AI PF VGIGVV LG IIG YR TQFNL KK KEQL E L E K E meliqsetn S 336
Cdd:pfam00771 240 S EG N LGEE I VGQ L FA N PKAL Y IAAGVLL L L G LIPG LP TL PF LLLAAL LG FLA YR LRRRK KK AAAE E A E A E --------- E 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 337 A E A E hnqafg A AREKF P VVV ELG LNIAA LV KQKMN G E t AK D KVVLM R KSILQD LG IG VP G I NFK DN TSFQ P r GK Y E IK V K 416
Cdd:pfam00771 311 A A A A ------ A VLPVD P LEL ELG YGLIP LV DESQG G D - LL D RIKGI R RQLALE LG FV VP P I RIR DN LQLK P - NE Y R IK I K 382
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 417 GV A VA S G V L KAG HLLA LKTP GV MMDLDAE PTK D P I FG EDGY WI LPGEL E D A QMKN Y Q V LE P LSILI THL DV V LRKNLH EL 496
Cdd:pfam00771 383 GV E VA R G E L LPD HLLA MNPG GV LGEIPGI PTK E P A FG LPAV WI DEEQR E E A ELAG Y T V VD P PTVIA THL TE V IKRHAA EL 462
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 497 L M RQ QIKD L I D G L AD E NQI L ID E IKK K EIDYSL IQ G VL RQ LL K E GI S V RDL P TI V E GII D GQTIY p N D L D GI T AF VR ERI 576
Cdd:pfam00771 463 L G RQ EVQA L L D N L KK E YPK L VE E LVP K LLSLGE IQ K VL QN LL R E RV S I RDL R TI L E TLA D YAPKT - K D P D LL T EY VR QAL 541
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 577 SKV IC E Q AKNQ DG KIYALL L QDSI E --- MDT e IVNTPYY G YA L NWAL D KELPIIQKVRDT V N K AQLT G RE PV I LT RR k D F 653
Cdd:pfam00771 542 GRQ IC Q Q YAGE DG TLPVIT L DPEL E qll RES - LQQSEGQ G SY L ALDP D LAQRLLEALSEA V E K LEQQ G EP PV L LT SP - D I 619
650 660
....*....|....*....|....*.
gi 500020773 654 R FGFV R V LER YQL D V PVLS IS E LS P E 679
Cdd:pfam00771 620 R RYLR R L LER FLP D L PVLS YN E IP P D 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
11-688
5.66e-178
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 522.98
E-value: 5.66e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 FAIL I A V SFVI A - L I V PLP P F V LD LV L VTIL A F S V L VYMRATS I KDWNELK SFP S LLL LMGI FR V S I N IST TR A ILT T G D 89
Cdd:TIGR01398 4 LLLA I G V VAIL A v M I L PLP A F L LD IL L ALNI A L S L L ILLVTLF I QKPLDFS SFP T LLL IATL FR L S L N VAS TR L ILT H G H 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 P ----- G Q VI KQ FG N FV I G S N F V V G IVI FIILI VFQ FIV - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LITE P EA 163
Cdd:TIGR01398 84 E gpnaa G K VI EA FG Q FV V G G N Y V I G LIV FIILI IVN FIV i TK G AT R I AEVAARFTLDA M PGKQMAIDADLN AG LITE E EA 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 164 K EK R AY L NM E TE FYGAMDGA G KFVKGD VLFTVLLAVV NI VF GLI V G M VQ G G L S FGE AA VK YT E LTIGDG I V S QI GS L LMA 243
Cdd:TIGR01398 164 K KR R EE L EQ E AD FYGAMDGA S KFVKGD AIAGIIITLI NI IG GLI I G V VQ H G M S LSD AA ST YT I LTIGDG L V A QI PA L IIS 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 244 MSA G V IVTR V fd G S DDNVAVG I FKE L MQ N SIVVYTLS A MFI L MGVFSP LP AI PF VGIGVV L GIIGYRTQFNL K KK E QLEL 323
Cdd:TIGR01398 244 TAT G L IVTR A -- S S EGSFGKA I VTQ L GA N PRALLIVA A VLG L LALVPG LP TF PF LFLAGA L AFLAWYLRRRS K QE E EAAA 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 324 E KEME liq S E TNSA E A E H nq AFGAAREKFPVVV ELG LNIAA LV KQKMN G ETA k D KVVLM RK SIL Q DL G IGV P G I NFK DN T 403
Cdd:TIGR01398 322 E AAKA --- Q E EAAE E E E E -- SINDILALDDLEL ELG YGLIP LV DDSQG G DLL - D RIRSI RK QLA Q EY G FVM P V I RIR DN L 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 404 SFQ P r GK Y E IK V KGV A VA S G V L KA G HL LA LKTPGVMMDLDA E P T KD P I FG EDG YWI LPGEL E D A QMKN Y Q V LE P LSI L I T 483
Cdd:TIGR01398 396 RLP P - NE Y R IK I KGV E VA R G E L RP G KY LA MNPGNADGEIPG E E T RE P A FG LPA YWI SEKNK E E A ERLG Y T V VD P ATV L A T 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 484 HL DV V LRK N LH ELL M RQ QIKD L I D G L AD E NQI L ID E IKKKEIDYSL IQ G VL RQ LL K E GI S V R D LPTI V E GII D GQT I y PN 563
Cdd:TIGR01398 475 HL SE V IKN N AA ELL T RQ EVQN L L D R L KE E YPK L VE E LIPDKVPLGT IQ K VL QL LL R E RV S I R N LPTI L E TLA D YAP I - TK 553
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 564 D L D GITAF VR E R ISKV I CE Q AKNQ DG KIYALL L QDSI E --- MDTEIVNTPYYGYA L NW AL DK EL pi IQK VR DT V N K AQLT 640
Cdd:TIGR01398 554 D P D LLVEH VR Q R LGRQ I TQ Q YLDE DG VLPVIT L DPDL E aal AEALKRDGEGELLD L EP AL LE EL -- VRA VR KA V E K LANN 631
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 500020773 641 G RE PV I LT --- R R KDF R fgfv R V LER YQLDV PVLS IS E LSPETE VE QIALI 688
Cdd:TIGR01398 632 G ER PV L LT spr V R PYV R ---- R I LER FFPEL PVLS YN E IPDNVR VE TVGVV 678
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
11-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 713.05
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 F AIL I a VSFVIAL I V PLPPF V LDL V L VTIL A F SVL VYMR A TS I KDWNELKS FP S LLL LMGIF R VSI N IST TR A IL TT G D - 89
Cdd:PRK06012 23 V AIL V - LAILAMM I L PLPPF L LDL L L TFNI A L SVL ILLV A LF I QRPLDFSA FP T LLL ITTLL R LAL N VAS TR L IL LE G H e 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 ---- P G Q VI KQ FG N FV I G S NFVVGIV I FIIL IVFQ F I V - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EAK 164
Cdd:PRK06012 102 gtda A G K VI EA FG H FV V G G NFVVGIV V FIIL VIIN F V V i TK G AG R I AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EAK 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 165 EK R AY L NM E TE FYGAMDGA G KFVKGD VLFTV L LA V V NI VF GLI V G M VQ G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAM 244
Cdd:PRK06012 182 KR R KE L QQ E AD FYGAMDGA S KFVKGD AIAGI L IT V I NI IG GLI I G V VQ H G M SFGEAA ET YT L LTIGDG L VSQI PA LL IST 261
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 245 S AG V IVTRV fd G SD DN V AVG I FKE L MQ N SIVV Y TLSAMFI L M G VFSPL P AI PF VGIGVV LG IIG YR TQFNL KK KEQ L EL E 324
Cdd:PRK06012 262 A AG I IVTRV -- S SD GD V GEQ I VGQ L FA N PKAL Y IAAGVLF L L G LVPGM P HL PF LLLAGL LG FLA YR LRKRE KK AAE L AA E 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 325 KEM E liqset NS A EAEHNQAFGAAREKF P VVV E L G LNIAA LV KQKMN GE t AK D KVVLM RK S I L Q D LG IG VP GINFK DN TS 404
Cdd:PRK06012 340 EAE E ------ EE A AEPEEESWDDVLPVD P LEL E V G YGLIP LV DENQG GE - LL D RIRSI RK K I A Q E LG FL VP PVRIR DN LQ 412
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 405 FQ P r GK Y E IK V KGV A V A SG V L KA G H LLA LKTP GV MMD L DAE PTK D P I FG EDGY WI LPGEL E D AQ MKN Y Q V LE P LSILI TH 484
Cdd:PRK06012 413 LP P - NE Y R IK I KGV E V G SG E L RP G R LLA MNPG GV DGE L PGI PTK E P A FG LPAV WI DEALR E Q AQ LLG Y T V VD P STVVA TH 491
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 485 L DV V LRKNLH ELL M RQ QIKD L I D G LA D E NQI L ID E IKK K EIDYSLI Q G VL RQ LLKE GI S V RDL P TI V E GII D GQT I y PN D 564
Cdd:PRK06012 492 L TE V IKNHAA ELL G RQ EVQQ L L D R LA K E YPK L VE E LVP K VLSLGTL Q K VL QN LLKE RV S I RDL R TI L E TLA D YAP I - TK D 570
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 565 L D GI T AF VR E R ISKV I CE Q A K NQ DG KIYALL L QDSI E - MDTEIVNTPYY G YA L NWALDKELPII Q KVRDTVNKAQLT G RE 643
Cdd:PRK06012 571 P D EL T EH VR Q R LGRQ I VQ Q Y K GE DG ELPVIT L DPEL E q LLLQSLQGTGG G SY L ALEPGLAERLL Q SLQEALERQEMK G EP 650
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 500020773 644 PV I L TRRK d F R FGFV R V LER YQLDV PVLS IS E LSPET E VEQIALIEPT 691
Cdd:PRK06012 651 PV L L VSPA - L R PYLR R L LER FLPQL PVLS YN E IPDNI E IRIVGTVGIN 697
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
11-689
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 679.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 FAILI a VSFVIAL I V PLPPF V LDL V L VTIL A F S V L VYMR A TS IK DWNELKS FP S LLL LMGI FR V S I N IST TR A IL TT G -- 88
Cdd:COG1298 3 VPLGV - IAILAMM I L PLPPF L LDL L L AFNI A L S L L ILLV A LY IK RPLDFSV FP T LLL ITTL FR L S L N VAS TR L IL LE G he 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 89 --- DP G Q VI KQ FG N FV I G S N F VVG I V I F I IL IVFQ F I V - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EA K 164
Cdd:COG1298 82 gtd AA G K VI EA FG E FV V G G N Y VVG L V V F L IL VIIN F V V i TK G AG R I AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EA R 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 165 EK R AYLNM E TE FYGAMDGA G KFV K GD VLFTV L LAVV NI VF GLI V G MV Q G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAM 244
Cdd:COG1298 162 RR R EEIQR E AD FYGAMDGA S KFV R GD AIAGI L ITLI NI IG GLI I G VL Q H G M SFGEAA QT YT L LTIGDG L VSQI PA LL IST 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 245 S AG V IVTR V fd GS DDNVAVGIFKE L MQ N SIVV Y TLSAMFI L M G VFSPL P AI PF VGIGVV LG IIG YR TQFNL K KK E QL E LE 324
Cdd:COG1298 242 A AG I IVTR A -- GS EGDLGEQLSGQ L FA N PKAL Y IAAGVLG L L G LIPGM P HL PF LLLAAL LG GLA YR LKKRQ K EE E AE E AA 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 325 KE meliq S E TNS A EAEHNQAFGAAREKF P VVV ELG LNIAA LV KQKMN G ETA k D KVVLM R KSIL Q D LG IG VP GINFK DN TS 404
Cdd:COG1298 320 AA ----- A E AEA A AEPAEESVDDLLPVD P LEL ELG YGLIP LV DESQG G DLL - D RIKGI R RQLA Q E LG FV VP PVRIR DN LQ 393
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 405 FQ P r GK Y E IK V KGV A VA S G V L KAGH LLA LKTP GV MMD L DAE PTK D P I FG EDGY WI L P GEL E D A QMKN Y Q V LE P LSILI TH 484
Cdd:COG1298 394 LK P - NE Y R IK I KGV E VA R G E L RPDR LLA INPG GV TGE L PGI PTK E P A FG LPAV WI D P EQR E E A ELLG Y T V VD P STVIA TH 472
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 485 L DV V LRKNLH ELL M RQ QIKD L I D G L AD E NQI L ID E IKK K EIDYSLI Q G VL RQ LL K E GI S V RDL P TI V E GII D GQT i YPN D 564
Cdd:COG1298 473 L SE V IKRHAA ELL G RQ EVQQ L L D R L KK E YPK L VE E LVP K LLSLGEL Q K VL QN LL R E RV S I RDL R TI L E TLA D YAP - RTK D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 565 L D GI T AF VR ERISKV I CE Q AKNQ DG KIYALL L QDSI E MD - T E IVNTPYY G YA L NWALDKELPII Q KVRDT V N K AQLT G RE 643
Cdd:COG1298 552 P D LL T EH VR QALGRQ I VQ Q YAGP DG ELPVIT L DPEL E QL l L E SLQQTEQ G SY L ALDPGLAQRLL Q SLAEA V E K LEAQ G EP 631
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 500020773 644 PV I L T r RKDF R FGFV R V LER YQL D V PVLS IS E LS P ET E V E QIALIE 689
Cdd:COG1298 632 PV L L V - SPQL R PYLR R L LER FLP D L PVLS YN E IP P DV E I E SVGTVG 676
FHIPEP
pfam00771 FHIPEP family;
20-679
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 662.16
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 20 VIAL I V PLPPF V LDL V L VTIL A F S V L VYMR A TS IK DWNELKS FP S LLL LMGI FR VSI N IST TR A IL TT G D -- P G Q VI KQ F 97
Cdd:pfam00771 2 LAMM I L PLPPF L LDL L L AFNI A L S L L ILLV A LY IK RPLDFSV FP T LLL ITTL FR LAL N VAS TR L IL LH G H ea A G K VI EA F 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 98 G N FV I G S N F VVG I V I F I IL IVF QFIV - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LI T E P EA KEK R AY L NM E TE F 176
Cdd:pfam00771 82 G Q FV V G G N Y VVG L V V F L IL VIV QFIV i TK G AE R V AEVAARFTLDA M PGKQMAIDADLN AG LI D E E EA RRR R EE L QR E AD F 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 177 YGAMDGA G KFVKGD VLFTVLLAVV NI VF GLI V G MV Q G G L SFGEAA VK YT E LTIGDG I VSQI GS LL MAMS AG V IVTRV fd G 256
Cdd:pfam00771 162 YGAMDGA S KFVKGD AIAGIIITLI NI IG GLI I G VL Q H G M SFGEAA QT YT L LTIGDG L VSQI PA LL ISTA AG I IVTRV -- A 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 257 S DD N VAVG I FKE L MQ N SIVV Y TLSAMFI L M G VFSP LP AI PF VGIGVV LG IIG YR TQFNL KK KEQL E L E K E meliqsetn S 336
Cdd:pfam00771 240 S EG N LGEE I VGQ L FA N PKAL Y IAAGVLL L L G LIPG LP TL PF LLLAAL LG FLA YR LRRRK KK AAAE E A E A E --------- E 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 337 A E A E hnqafg A AREKF P VVV ELG LNIAA LV KQKMN G E t AK D KVVLM R KSILQD LG IG VP G I NFK DN TSFQ P r GK Y E IK V K 416
Cdd:pfam00771 311 A A A A ------ A VLPVD P LEL ELG YGLIP LV DESQG G D - LL D RIKGI R RQLALE LG FV VP P I RIR DN LQLK P - NE Y R IK I K 382
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 417 GV A VA S G V L KAG HLLA LKTP GV MMDLDAE PTK D P I FG EDGY WI LPGEL E D A QMKN Y Q V LE P LSILI THL DV V LRKNLH EL 496
Cdd:pfam00771 383 GV E VA R G E L LPD HLLA MNPG GV LGEIPGI PTK E P A FG LPAV WI DEEQR E E A ELAG Y T V VD P PTVIA THL TE V IKRHAA EL 462
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 497 L M RQ QIKD L I D G L AD E NQI L ID E IKK K EIDYSL IQ G VL RQ LL K E GI S V RDL P TI V E GII D GQTIY p N D L D GI T AF VR ERI 576
Cdd:pfam00771 463 L G RQ EVQA L L D N L KK E YPK L VE E LVP K LLSLGE IQ K VL QN LL R E RV S I RDL R TI L E TLA D YAPKT - K D P D LL T EY VR QAL 541
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 577 SKV IC E Q AKNQ DG KIYALL L QDSI E --- MDT e IVNTPYY G YA L NWAL D KELPIIQKVRDT V N K AQLT G RE PV I LT RR k D F 653
Cdd:pfam00771 542 GRQ IC Q Q YAGE DG TLPVIT L DPEL E qll RES - LQQSEGQ G SY L ALDP D LAQRLLEALSEA V E K LEQQ G EP PV L LT SP - D I 619
650 660
....*....|....*....|....*.
gi 500020773 654 R FGFV R V LER YQL D V PVLS IS E LS P E 679
Cdd:pfam00771 620 R RYLR R L LER FLP D L PVLS YN E IP P D 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
11-688
5.66e-178
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 522.98
E-value: 5.66e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 FAIL I A V SFVI A - L I V PLP P F V LD LV L VTIL A F S V L VYMRATS I KDWNELK SFP S LLL LMGI FR V S I N IST TR A ILT T G D 89
Cdd:TIGR01398 4 LLLA I G V VAIL A v M I L PLP A F L LD IL L ALNI A L S L L ILLVTLF I QKPLDFS SFP T LLL IATL FR L S L N VAS TR L ILT H G H 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 P ----- G Q VI KQ FG N FV I G S N F V V G IVI FIILI VFQ FIV - AN G SS R T AEVAARFTLDA L PGKQMAIDADLN QR LITE P EA 163
Cdd:TIGR01398 84 E gpnaa G K VI EA FG Q FV V G G N Y V I G LIV FIILI IVN FIV i TK G AT R I AEVAARFTLDA M PGKQMAIDADLN AG LITE E EA 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 164 K EK R AY L NM E TE FYGAMDGA G KFVKGD VLFTVLLAVV NI VF GLI V G M VQ G G L S FGE AA VK YT E LTIGDG I V S QI GS L LMA 243
Cdd:TIGR01398 164 K KR R EE L EQ E AD FYGAMDGA S KFVKGD AIAGIIITLI NI IG GLI I G V VQ H G M S LSD AA ST YT I LTIGDG L V A QI PA L IIS 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 244 MSA G V IVTR V fd G S DDNVAVG I FKE L MQ N SIVVYTLS A MFI L MGVFSP LP AI PF VGIGVV L GIIGYRTQFNL K KK E QLEL 323
Cdd:TIGR01398 244 TAT G L IVTR A -- S S EGSFGKA I VTQ L GA N PRALLIVA A VLG L LALVPG LP TF PF LFLAGA L AFLAWYLRRRS K QE E EAAA 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 324 E KEME liq S E TNSA E A E H nq AFGAAREKFPVVV ELG LNIAA LV KQKMN G ETA k D KVVLM RK SIL Q DL G IGV P G I NFK DN T 403
Cdd:TIGR01398 322 E AAKA --- Q E EAAE E E E E -- SINDILALDDLEL ELG YGLIP LV DDSQG G DLL - D RIRSI RK QLA Q EY G FVM P V I RIR DN L 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 404 SFQ P r GK Y E IK V KGV A VA S G V L KA G HL LA LKTPGVMMDLDA E P T KD P I FG EDG YWI LPGEL E D A QMKN Y Q V LE P LSI L I T 483
Cdd:TIGR01398 396 RLP P - NE Y R IK I KGV E VA R G E L RP G KY LA MNPGNADGEIPG E E T RE P A FG LPA YWI SEKNK E E A ERLG Y T V VD P ATV L A T 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 484 HL DV V LRK N LH ELL M RQ QIKD L I D G L AD E NQI L ID E IKKKEIDYSL IQ G VL RQ LL K E GI S V R D LPTI V E GII D GQT I y PN 563
Cdd:TIGR01398 475 HL SE V IKN N AA ELL T RQ EVQN L L D R L KE E YPK L VE E LIPDKVPLGT IQ K VL QL LL R E RV S I R N LPTI L E TLA D YAP I - TK 553
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 564 D L D GITAF VR E R ISKV I CE Q AKNQ DG KIYALL L QDSI E --- MDTEIVNTPYYGYA L NW AL DK EL pi IQK VR DT V N K AQLT 640
Cdd:TIGR01398 554 D P D LLVEH VR Q R LGRQ I TQ Q YLDE DG VLPVIT L DPDL E aal AEALKRDGEGELLD L EP AL LE EL -- VRA VR KA V E K LANN 631
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 500020773 641 G RE PV I LT --- R R KDF R fgfv R V LER YQLDV PVLS IS E LSPETE VE QIALI 688
Cdd:TIGR01398 632 G ER PV L LT spr V R PYV R ---- R I LER FFPEL PVLS YN E IPDNVR VE TVGVV 678
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
4-689
1.20e-147
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 445.39
E-value: 1.20e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 4 L G A IKKYFAILI A V s FVI A ---- L I V PLP PFVL D LVLVTILAF SVL VY M R A TS I KDWNELKS FPS L LL LMGI FR VSIN IS 79
Cdd:COG4789 2 L N A ASGRSDLVL A A - LLV A iifm M I L PLP TYLV D ILIALNITI SVL LL M V A MY I PSPLAFST FPS V LL ITTL FR LALS IS 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 80 TTR A IL TTG D P G QV I KQ FGNFV I G S N F VVG I VIF I I LI V F QFIV - AN GS S R T AEVAARF T LDA L PGKQM A IDADL NQRL I 158
Cdd:COG4789 81 TTR L IL LQA D A G HI I ET FGNFV V G G N L VVG L VIF L I IT V V QFIV i TK GS E R V AEVAARF S LDA M PGKQM S IDADL RAGV I 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 159 TEP EA KEK RA Y L NM E TEF YGAMDGA G KFVKGD VLFTVLLAV VNI VF G LIV G MV Q G G L S FG EA AVK Y TE LTIGDG I V S QI G 238
Cdd:COG4789 161 DAD EA RRR RA L L EK E SQL YGAMDGA M KFVKGD AIAGIIIIL VNI IG G IAI G VL Q H G M S AS EA LHT Y SI LTIGDG L V A QI P 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 239 S LL MAMS AG V IVTRV FDGS D D N VAVG I FKE L MQNSIVVYTLSAMFI L MGVFSPL P AIP F VGIGVV LG II G YR tqfn L KKK 318
Cdd:COG4789 241 A LL ISIT AG I IVTRV SGDE D S N LGRE I VSQ L LAQPKALLIAAVLLL L FALIPGF P TLV F LLLAAL LG GL G FK ---- L LRR 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 319 EQLELEKEMELIQSETNS A E A EHNQ A FGAAREK FP VV V E L G L NIAALVKQKMNG E TAKDKVVLM R KSILQ DLG IGV PGI N 398
Cdd:COG4789 317 KRRAAAAAESEPLPALQA A G A KGSE A GLIDGDD FP PT V P L I L RLSPSLAPALEA E ALNQEIRRL R NRLFE DLG VPL PGI H 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 399 FKD N TSFQP r GK Y E I KVKG V A VA S G V L KA GHLL ALKTPG -- VMMDLD AE PTKD P IFGEDGY W ILPGEL E DAQMKNYQ V LE 476
Cdd:COG4789 397 IRF N PGLPD - DE Y S I LLNE V P VA R G T L PP GHLL VRDDVD el EALGIP AE EGEL P LGEGPSL W VPAEHA E LLEKAGIK V RD 475
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 477 PLSI L IT HL DV VLR KNLH E LLMR Q QIKD L I D GLADENQI L ID E I k KKEIDYSL I QG VL RQ L LK EGIS V R D L PT I V E GI I D 556
Cdd:COG4789 476 AEDV L AL HL SL VLR RHAA E FIGI Q ETRY L L D QMEKKYPE L VK E V - QRVLPLQR I AE VL QR L VE EGIS I R N L RL I L E AL I E 554
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 557 - G QTI yp N D LDGI T AF VR ERISKV IC EQAKNQD G KIY ALLL QDS IE mdt E IV ----- N T PYYGYA lnw ALD K E LP -- I IQ 628
Cdd:COG4789 555 w G PKE -- K D VVML T EY VR IALKRY IC HRYSGGQ G TLP ALLL DPE IE --- E MI rgair Q T SAGSFL --- ALD P E QS qa I LE 626
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500020773 629 KV R DTVNKAQLT G RE PV I LT ---- RR kdfrfg FVR V L - ER YQL D V PVLS IS EL S PE TE V EQIAL I E 689
Cdd:COG4789 627 QL R QALGPLPPG G QD PV L LT smdi RR ------ FVR K L i ER EFP D L PVLS YQ EL T PE IR V QPLGR I D 686
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
13-688
1.55e-123
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 382.85
E-value: 1.55e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 13 ILI A VSFVIA --- L I V PLP PFVL D LVLVTILAF SVL VY M R A TS I KDWNE L KS FPS L LL LMGI FR VSIN ISTTR A IL TTG D 89
Cdd:TIGR01399 5 LVL A LLLLAI ism M I L PLP TLLV D ILIAINITI SVL LL M I A IY I PRPLA L ST FPS V LL ITTL FR LALS ISTTR L IL LHA D 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 P G QV I KQ FG N FV I G S N FV VG I VIF I I LIVF QFIV - AN GS S R T AEV A ARF T LDA L PGKQM A IDADL NQRL I TEP EA KEK R A 168
Cdd:TIGR01399 85 A G NI I EA FG Q FV V G G N LA VG L VIF L I ITIV QFIV i TK GS E R V AEV S ARF S LDA M PGKQM S IDADL RAGV I DAD EA RRR R S 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 169 Y L NM E TEF YGAMDGA G KFVKGD VLFTVLLAVV NI VF G LIV G MV Q G G L S FG EA AVK YT E LTIGDG I VSQI GS LL MAMS AG V 248
Cdd:TIGR01399 165 T L EK E SQL YGAMDGA M KFVKGD AIAGIIIVLI NI IG G ISI G VT Q H G M S AS EA LHL YT V LTIGDG L VSQI PA LL ISVT AG I 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 249 IVTRV FDGSDD N VAVG I FKE L MQNSIVVYTLSAMFILMGVFSPL P AIP F VGIG V V L GII GY RTQ fn LK K KEQLELE K EME 328
Cdd:TIGR01399 245 IVTRV PGEAER N LGRE I GHQ L TSQPRALLLAAVLLLGFALIPGF P LLV F ALLA V L L AAA GY LLS -- RR K RSRAKAN K AQA 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 329 LIQSETNSAE A ehnq A FGAAREK F PVVVE L G L NIAALVKQKMNGE T AKDKVVL MR KSILQ DLGI GV PGI NFKDNT S FQP r 408
Cdd:TIGR01399 323 SGAVASAPGA A ---- A PIKNLDP F AEACP L I L RLSPDLQSSADKD T LDQEIER MR WALFE DLGI PL PGI IIRVGD S LPD - 397
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 409 GKYE I KVKG V A V ASGVLKA GH LLALKTPGVMMDLDAE - PTKDPIF GE DG - Y W ILPGEL E DA Q MKNYQVLEPLSILITH L D 486
Cdd:TIGR01399 398 NEFR I LLYE V P V LRDTIPP GH VALNDGVDNIEVAGIP a ISGKRWP GE SQ r V W VTEEGA E KL Q GAGLGYFSDSQVITHR L K 477
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 487 VV L RK N LH E LLMR Q QIKD L I D GLAD E NQI L ID E I k KKEIDYSL I QG VL RQ L LK E GI S V R D L PT I V E GI I D - G Q T iy PN D L 565
Cdd:TIGR01399 478 AT L LR N AQ E FIGI Q ETRY L L D QMER E YPE L VK E V - QRVLPLQR I AE VL QR L VS E QV S I R N L RL I L E TL I E w A Q R -- EK D V 554
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 566 DGI T AF VR ERISKV IC EQAK N QDGKIY A L L LQDS IE -- MDTE I VN T PYYG Y aln W ALD KELP -- IIQKV R DT V NKAQLTG 641
Cdd:TIGR01399 555 VML T EY VR IALKRY IC HRYA N GGRQLS A V L IDPE IE el IRGA I RQ T STGT Y --- L ALD PDDS eq LLDQI R QA V GDLPRAP 631
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 500020773 642 RE PV I LT ---- RR kdfrfg F VR - VL E RYQL D V PVLS IS EL SP E T EV EQIAL I 688
Cdd:TIGR01399 632 SQ PV L LT smdi RR ------ Y VR k MI E SEFP D L PVLS YQ EL GE E I EV QVLGR I 677
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
11-581
2.80e-102
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 327.84
E-value: 2.80e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 11 FA IL I a V SFVIA L IV P L P PFVL D LV L VTIL A F SVL VY M R A TS I KDWN E LKS FP SL LL LMGIF R VSI NI S TTR A IL TT G D - 89
Cdd:PRK12792 20 FA VG I - V AILAV L FL P V P AVLI D IG L AFSI A L SVL IL M V A LW I QRPL E FSA FP TV LL IATLL R LAL NI A TTR L IL SN G Q e 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 ---- P G Q VI KQ F GN FV IGSN FV V G I V I F I ILI VFQ F I V - AN G SS R T AEV A ARFTLDA L PGKQMAIDADL NQR LI TEP EA K 164
Cdd:PRK12792 99 gvda A G H VI AG F SQ FV MSGD FV I G L V V F A ILI TVN F L V i TK G AT R I AEV G ARFTLDA I PGKQMAIDADL SAG LI DDK EA Q 178
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 165 EK R AY L NM E TE F Y G A MDGA G KFV K GD VLFTVLLAV VNI VF G L I V G MVQG G LSF G E AA VKY T E L TI GDG I VSQI GS L LMAM 244
Cdd:PRK12792 179 RR R RE L EE E SA F F G S MDGA S KFV R GD AIASLIIIA VNI FG G I I I G VTRH G MPL G Q AA DVF T K L SV GDG L VSQI PA L IVSL 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 245 S AG VI V TR vf D G SDDNVAVGIFKE L MQNSIVVYTLSAMFILMGVFSP LP AI PF VGI G V V LGIIG Y --- R TQFNLKKK E QL 321
Cdd:PRK12792 259 A AG LL V SK -- G G TRGSAEQAVLGQ L GAYPRALSVAALLMFVLAIVPG LP FL PF ALL G G V MAFVA Y tip R RRAARAAA E AA 336
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 322 ELEK E M E liqsetn SA E AE HNQAFGAAREKFPVVVE LG LNI AA l VK Q KMNG E T A K d K V VL MR KSILQDL G IG VP G I NFK D 401
Cdd:PRK12792 337 KVKR E E E ------- SA Q AE AKDSVKEQLRTAEIELC LG KQL AA - QL Q GAHA E L A H - R V AK MR RKFAKQY G FV VP E I KLT D 407
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 402 NT S FQ P RG k Y E IK VK G VA VA SGV L KA G H LL ALKTP G VMM D LDA E PTKD P I FG EDGY W ILPGELEDAQMKNYQVLEPL S I L 481
Cdd:PRK12792 408 SL S LP P KT - Y Q IK IH G TV VA TQE L RP G E LL VVVGD G PRP D VPG E EVRE P A FG MKAL W VPDAFANEVRRDGFEPVDNA S V L 486
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 482 I THL DV V L R K NL HE LL MRQQIKD L I D G L AD E NQI LID E I KKKE I D YS LI Q G VL RQ LL K E GI S V R D L PT I V E GIID gqt I Y 561
Cdd:PRK12792 487 L THL SE V I R N NL PQ LL SYKDMRA L L D R L DP E YKR LID D I CPSQ I S YS GL Q A VL KL LL A E RV S I R N L HL I L E AVAE --- I A 563
570 580
....*....|....*....|..
gi 500020773 562 P N -- DLDG I TAF VR E RI SKV IC 581
Cdd:PRK12792 564 P H ar RAEQ I AEH VR M RI AQQ IC 585
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
13-689
1.26e-93
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 304.33
E-value: 1.26e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 13 I LI AV SFVI A --- L I V PLP PFVL D LVLVTI L A FSV LVY M R A TSIK D WN E LKS FPSLLL LMGIF R VSIN IST T R AI L TTG D 89
Cdd:PRK12720 17 I VL AV MLLV A vfm M I L PLP TWMV D ILIAIN L M FSV ILL M I A IYLR D PL E FSV FPSLLL ITTLY R LALT IST S R LV L LQH D 96
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 90 P G QVIKQ FG N FV I G S N FV VG IVI F I I LIVF QFIV - AN GS S R T AEV A ARF T LD AL PGKQM A ID A D LNQRL I TEP EA KEK R A 168
Cdd:PRK12720 97 A G EIVDA FG K FV V G G N LA VG LIV F T I ITIV QFIV i TK GS E R V AEV S ARF S LD GM PGKQM S ID G D MRAGV I DAD EA RRL R Q 176
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 169 YLNM E TEFY GAMDGA G KFVKGD VLFTVLLAV VNI VF G L I V G MV Q GGL S FG EA AVK Y TE L T IGDG IVS QI G SLL MAMS AG V 248
Cdd:PRK12720 177 HVQK E SRLL GAMDGA M KFVKGD AIAGIIVIL VNI IG G I I I G VM Q HDM S AS EA VNT Y AV L S IGDG LCG QI P SLL ISIT AG I 256
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 249 IVTRV FDGSDD N V A vgif K EL - M Q NSIVVYT L SAMFILMGV F SPL P AI PF V g IGVV L GIIGYRTQFN L KK K EQ lelekem 327
Cdd:PRK12720 257 IVTRV PGEKRQ N L A ---- N EL s S Q IGRQPQA L WLAAVVLML F ALI P GF PF I - TFAF L AALVAAPAIL L RR K KS ------- 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 328 eli QSET N SA EA EHNQAFGAAREKF P VVVE L G L NI A A lvkq KMNGETAKDKVVLM R KSILQ DLG IGV P GI N FKDNTSFQP 407
Cdd:PRK12720 325 --- VVSA N GV EA GGSEEGPEGDSMV P GACP L M L RL A P ---- TLHSADLIRDIDAL R WFLFE DLG VPL P EV N IEVDPELTE 397
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 408 r GKYEIKVKGVA V A S GV L KAGH LL A L KT P GV mm D L DAEPTKD P IFGEDGY W ILPGEL E D AQ MKNYQ V LEPLSILITH L DV 487
Cdd:PRK12720 398 - KTLTVLLYQEP V L S LS L PPQA LL L L IG P DA -- S L VGDSQTL P NGMGQIC W LTKDQA E Q AQ GFGLD V FAGSQRISAL L KC 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 488 VL RKNLH E LLMR Q QIKD L I D GLADENQI L ID E I k KKEIDYSL I QGV L RQ L LK E GI S V RDL P TI VEGIIDGQ tiy P NDL D G 567
Cdd:PRK12720 475 VL LRYMG E FIGV Q ETRY L M D AMEKRYGE L VK E L - QRQLPVGK I AEI L QR L VS E RV S I RDL R TI FGTLVEWA --- P REK D V 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 568 I -- T AF VR ERISKV I CEQAKNQDGKIYA L LLQDS IE -- MDTE I VN T PYYG Y A lnw AL DKE -- LP I I Q KVRDTVNKA Q ltg 641
Cdd:PRK12720 551 V ml T EY VR IALRRH I LRRFNHEGKWLPV L RIGEG IE nl IRES I RQ T SAGT Y S --- AL SSR hs TQ I L Q LIEQALKQS Q --- 624
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 500020773 642 r EP V IL T ---- RR kdfrfg F V R - VL ER YQL D V PVLS IS EL SP E T E VEQIAL I E 689
Cdd:PRK12720 625 - KL V LV T svdv RR ------ F L R k II ER TLF D L PVLS WQ EL GD E A E IKVVGS I D 670
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
13-688
4.01e-92
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 300.75
E-value: 4.01e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 13 IL IAVSFV IA - LI V PLP PFVL D LVLVTILAFSV LV Y M RATS I KDWNELKS FPS L LL LMGI FR VSIN IST T R A IL TTG D P G 91
Cdd:PRK15337 17 IL VLMVMI IA m LI I PLP TYLV D FLIGLNIVLAI LV F M GSFY I DRILSFST FPS I LL ITTL FR LALS IST S R L IL LDA D A G 96
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 92 QV I KQ FG N FVIG SNF VVG I VIF I I LI V F QFIV - AN GS S R T AEVAARF T LD AL PGKQM A IDADL NQRL I TEPEA KE K R AY L 170
Cdd:PRK15337 97 EI I TT FG Q FVIG DSL VVG F VIF S I VT V V QFIV i TK GS E R V AEVAARF S LD GM PGKQM S IDADL KAGI I DADGV KE R R SV L 176
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 171 NM E TEF YG AM DGA G KF V KGD VLFTVLLAV VN IVF G LI VGM V Q G G LSFGE A AVK YT E LTIGDG I V S QI GS LL MAM SAG V IV 250
Cdd:PRK15337 177 ER E SQL YG SF DGA M KF I KGD AIAGIIIIF VN LIG G IS VGM T Q H G MDLSS A LST YT I LTIGDG L V A QI PA LL ISI SAG F IV 256
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 251 TRV f D G SD DN VAVG I FKE L MQ N SI V VYTLSAMFILM G VFSPL P AIP F VGIG VVLG IIG Y RTQ F NL KKK EQ lele K E MELI 330
Cdd:PRK15337 257 TRV - N G DS DN LGRN I MSQ L LS N PF V LVVTAILALSI G LLPGF P LPV F LLLA VVLG VLF Y FKK F RK KKK SA ---- A E PDTS 331
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 331 QS E TNSAEA E HNQAFGAAREKFPV V VELGLNIAA LV KQKMNGETA K DKVV - LM R KSILQ D L G IGV P G I NFKDNTSF q PRG 409
Cdd:PRK15337 332 GG E APLDID E KAGSSLGLIGDLDK V IPETVPLIL LV PEARRPDLE K ENLA e RL R SQFFI D Y G VRL P D I LLRYSEGL - DDN 410
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 410 KYEIKVKGVAV A SGVLKAGHLLALKTPGVMMD L DAE PT KDPIF GE DG YW ILPGEL E DAQMKN Y QVLEPLSI L ITH L D V V L 489
Cdd:PRK15337 411 SIVVLINEIRA A QFTIYFDLHRVVNYSDELVS L GIN PT IIDSG GE QY YW VPHEDT E KLAKLG Y VLRSAIDE L YHC L S V L L 490
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 490 RK N LH E LLMR Q QI K D L I D G L ADENQI L ID E I k KKEIDYSL I QG VL RQ LL K E G IS V R DLPT I V E GIIDGQ tiy P NDL D G I - 568
Cdd:PRK15337 491 LH N IN E FFGI Q ET K H L L D Q L EKKYPD L LK E V - YRHATVQR I SE VL QR LL S E R IS I R NMKL I M E ALALWA --- P REK D V I m 566
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 569 - TAF VR ERISKV IC EQAKN q D G KIY A LL L QDSI E - MDTEIVNTPYY G YA LN WALDKELPIIQKVRDTVNKAQLTG R EP V I 646
Cdd:PRK15337 567 l VEH VR GALARY IC HKFAA - G G ELR A VV L SAEV E d AIRKGIRQTSG G TF LN LDPAESENLMDLLTLALDDLGIAH R DI V L 645
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 500020773 647 L T ---- RR kdfrfg FV RV L -- E R YQ l DVP VLS IS E LSPET EV EQ I AL I 688
Cdd:PRK15337 646 L V svdi RR ------ FV KK L ie G R FP - ELE VLS FG E IADSV EV NV I KT I 686
PRK05910
PRK05910 type III secretion system protein; Validated
13-554
7.11e-38
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 149.17
E-value: 7.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 13 IL I AVSFVIA LI V PLP PFV LD LV L VTIL A F S VLVYMRAT S IKDWNELKS FPSL L L LMGIF R VSI N IST TR A IL TT G DPGQ 92
Cdd:PRK05910 13 VA I PLCILFT LI F PLP QWL LD FG L CINF A L S LSIVFWVF S LRSSASARL FPSL F L YLCLL R LGL N LAS TR W IL SS G WASP 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 93 V I KQF GNF VIGSNFVVGIVIFII L IVFQ F I V - AN GS S R T AEV A ARF T L D ALPGKQM AI DADL NQRLITEPEAKEKRAY L N 171
Cdd:PRK05910 93 L I FSL GNF FSLGSLPAALTACLL L FLVN F L V i TK GS E R I AEV R ARF S L E ALPGKQM SL DADL VSGRASYSRVSKQKNS L L 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 172 M E TE F YG AM D G AGK FVKGD VLFTVL L AV VNI VFGLIV G MVQ G G lsfgea AV KYTE LT I - GD GI VSQ IGS LL MAMS A GVIV 250
Cdd:PRK05910 173 E E SD F FS AM E G VFR FVKGD AIMSCI L LG VNI LAATFL G RAT G Y ------ AV GDLW LT V l GD AL VSQ VPA LL TSCA A ATLI 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 251 TR V fd G SDDNVAVGIFKELM Q NSIVVYTLSAMFILMGVFSPL P AI P FV G IG V V L g IIG Y R tqf N LKKK E Q L ELE KE - M E L 329
Cdd:PRK05910 247 SK V -- G EKESLLQHLLDYYE Q SRQHFRFIALLLCSLACIPGA P KA P IL G FS V L L - FLA Y K --- N PSSG E T L LFQ KE r F E F 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 330 IQ - SETNSAEAEHNQAFG AARE K fpvvvelglniaalvkqkmngetakdkvvlmrks I L Q D LG IGV P ginfkdntsfqpr 408
Cdd:PRK05910 321 VE l ALPDEGVGNPANLYR AARE E ---------------------------------- I F Q E LG VVF P ------------- 353
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500020773 409 gk Y EI K V KG V AVASGVLKA G HLLA L K tpgvmmdldaeptkdpifgedgywilpgeledaqmknyqvlepl SILITHLDVV 488
Cdd:PRK05910 354 -- E EI V V RH V ESSPRLIFS G QEVY L R -------------------------------------------- ELSCPAILPS 387
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500020773 489 LR KNLH E LLMRQQI K D L IDGLADENQ I L I D EI KK K E I DYSLIQGV LR Q L LK E GI S VRDL P T I V E G I 554
Cdd:PRK05910 388 LR NLAP E AISERFV K R L VEEFQEVAG I S I E EI IP K K I SENSLVFL LR A L VR E RV S LHLF P K I L E A I 453
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
