|
Name |
Accession |
Description |
Interval |
E-value |
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
1-223 |
1.18e-96 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 280.78 E-value: 1.18e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 1 MSEGDLLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRD 80
Cdd:COG4149 1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 81 TFGAPLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLG 160
Cdd:COG4149 81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500024773 161 EFGVVLMIGGNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRR 223
Cdd:COG4149 161 EFGATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
10-219 |
1.67e-69 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 211.72 E-value: 1.67e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 10 WLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGaWWRDTFGAPLAFS 89
Cdd:TIGR02141 1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 90 FTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIG 169
Cdd:TIGR02141 80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 500024773 170 GNIPGETQVLSIALFDHVETmDYQNAHLLAGGLMGFSLVMLVLVYGVLQR 219
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVES-DYELAHQLSLVLLAISLIVLLLVELLNKR 208
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
1-224 |
2.51e-40 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 137.75 E-value: 2.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 1 MSEGDLLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRD 80
Cdd:PRK09421 3 LSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 81 TFGAPLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLG 160
Cdd:PRK09421 83 WFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500024773 161 EFGVVLMIGGNIPGETQVLSIALFDHVET--MDYQNAHLLAGGLMgFSLVMLVLVYGVLQRRQRRL 224
Cdd:PRK09421 163 EFGATITFVSNIPGETQTIPSAMYTLIQTpgGESAAARLCIISIA-IALASLLLSEWLARRSRKRL 227
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
10-207 |
5.21e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 75.78 E-value: 5.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 10 WLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWrdtfgaplaFS 89
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP---------GL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 90 FTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIG 169
Cdd:cd06261 73 GLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 500024773 170 GNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSL 207
Cdd:cd06261 153 GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
12-182 |
4.95e-09 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 54.09 E-value: 4.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 12 TLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWwrdtfgaPLAFSFT 91
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 92 GLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVmAAALGFAHTLGEFGVVLMIGGN 171
Cdd:NF038017 74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFALLA-AVLAGFGRAISEVGAVMMVGGN 152
|
170
....*....|.
gi 500024773 172 IPGETQVLSIA 182
Cdd:NF038017 153 IRGYTRVLTTA 163
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
40-223 |
2.57e-05 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 43.44 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 40 RLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYglgawwrdtfgapLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNK 119
Cdd:pfam00528 15 RLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-------------LGHGILPAIILALLGWAGYARLIRRAALRSLPSD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 120 ELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGnIPGETQVLSIALFDHVETMDYQNAHLLA 199
Cdd:pfam00528 82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGS-WPGLGLLLIEAILGYDYPEIQGPVLAAA 160
|
170 180
....*....|....*....|....
gi 500024773 200 GGLMGFSLVMLVLvYGVLQRRQRR 223
Cdd:pfam00528 161 LILLLLNLLVDIL-QRLLDPRVRK 183
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
1-223 |
1.18e-96 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 280.78 E-value: 1.18e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 1 MSEGDLLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRD 80
Cdd:COG4149 1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 81 TFGAPLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLG 160
Cdd:COG4149 81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500024773 161 EFGVVLMIGGNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRR 223
Cdd:COG4149 161 EFGATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
10-219 |
1.67e-69 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 211.72 E-value: 1.67e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 10 WLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGaWWRDTFGAPLAFS 89
Cdd:TIGR02141 1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 90 FTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIG 169
Cdd:TIGR02141 80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 500024773 170 GNIPGETQVLSIALFDHVETmDYQNAHLLAGGLMGFSLVMLVLVYGVLQR 219
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVES-DYELAHQLSLVLLAISLIVLLLVELLNKR 208
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
6-223 |
1.13e-49 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 163.00 E-value: 1.13e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 6 LLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWrDTFGAP 85
Cdd:COG0555 53 LAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLL-APLGIK 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 86 LAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVV 165
Cdd:COG0555 132 VAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAV 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 500024773 166 LMIGGNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYgVLQRRQRR 223
Cdd:COG0555 212 IFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLLIN-LLQRRSRR 268
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
1-224 |
2.51e-40 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 137.75 E-value: 2.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 1 MSEGDLLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRD 80
Cdd:PRK09421 3 LSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 81 TFGAPLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLG 160
Cdd:PRK09421 83 WFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500024773 161 EFGVVLMIGGNIPGETQVLSIALFDHVET--MDYQNAHLLAGGLMgFSLVMLVLVYGVLQRRQRRL 224
Cdd:PRK09421 163 EFGATITFVSNIPGETQTIPSAMYTLIQTpgGESAAARLCIISIA-IALASLLLSEWLARRSRKRL 227
|
|
| 3a0106s02 |
TIGR00969 |
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ... |
8-220 |
3.56e-34 |
|
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]
Pssm-ID: 273370 Cd Length: 271 Bit Score: 122.85 E-value: 3.56e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWrDTFGAPLA 87
Cdd:TIGR00969 61 AYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWL-ASFGIQII 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 88 FSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLM 167
Cdd:TIGR00969 140 FTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVV 219
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 500024773 168 IGGNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVyGVLQRR 220
Cdd:TIGR00969 220 VSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVTLFLI-NALQAR 271
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
8-212 |
3.58e-33 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 119.04 E-value: 3.58e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWrDTFGAPLA 87
Cdd:TIGR01581 22 ALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYL-EAAGIQVI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 88 FSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLM 167
Cdd:TIGR01581 101 FSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLM 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 500024773 168 IGGNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVL 212
Cdd:TIGR01581 181 FAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
6-223 |
2.33e-32 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 117.91 E-value: 2.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 6 LLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSpsyglgawwrdtfGAP 85
Cdd:COG1177 60 LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFS-------------ALG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 86 LAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVV 165
Cdd:COG1177 127 LSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVIT 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 500024773 166 LMIGGnipGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRR 223
Cdd:COG1177 207 LFLAG---PGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
11-189 |
8.38e-30 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 110.87 E-value: 8.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 11 LTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWrDTFGAPLAFSF 90
Cdd:CHL00187 59 LTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLL-SHLGIQIVFTK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 91 TGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGG 170
Cdd:CHL00187 138 LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISS 217
|
170
....*....|....*....
gi 500024773 171 NIPGETQVLSIALFDHVET 189
Cdd:CHL00187 218 NIPFKDLVASVLIFQSLEQ 236
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
8-221 |
6.36e-29 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 113.33 E-value: 6.36e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRDTFGAPLA 87
Cdd:COG1178 55 ALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPP 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 88 --FSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVV 165
Cdd:COG1178 135 diYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTP 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 500024773 166 LMIGGNIpgetQVLSIALFDHVETM-DYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQ 221
Cdd:COG1178 215 LVLGGGY----TTLTTAIYQAWLGDfDLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
6-220 |
2.97e-27 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 108.32 E-value: 2.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 6 LLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLgawwrdtfgaP 85
Cdd:COG1178 337 LRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPL----------L 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 86 LAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVV 165
Cdd:COG1178 407 LYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSAT 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 500024773 166 LMIGgniPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRR 220
Cdd:COG1178 487 LLLR---PPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
30-226 |
5.62e-26 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 101.75 E-value: 5.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 30 LAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRDtFGAPLAFSFTGLLLASILYSLPFVVQPL 109
Cdd:PRK10971 81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAK-FDIKVTYTWLGIAVAMAFTSIPFVVRTV 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 110 TSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGNIPGETQVLSIALFDHVET 189
Cdd:PRK10971 160 QPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQE 239
|
170 180 190
....*....|....*....|....*....|....*..
gi 500024773 190 MDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRRLFG 226
Cdd:PRK10971 240 FDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG 276
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
8-223 |
3.34e-23 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 94.44 E-value: 3.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSyGLGAWWRDTFGA--- 84
Cdd:COG1176 68 VLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGLide 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 85 --PLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEF 162
Cdd:COG1176 147 plRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500024773 163 GVVLMIGGnipGETQVLSIALFDHV-ETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRR 223
Cdd:COG1176 227 VTPALLGG---GKVLMIGNLIYQQFlSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
1-179 |
4.85e-18 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 80.57 E-value: 4.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 1 MSEGDLL-AVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWr 79
Cdd:PRK11602 57 LADPDMLhAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL- 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 80 DTFGAPLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTL 159
Cdd:PRK11602 136 DEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAI 215
|
170 180
....*....|....*....|
gi 500024773 160 GEFGVVLMIGGNIPGETQVL 179
Cdd:PRK11602 216 GEFGAVSVVSGSIRGETLSL 235
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
10-207 |
5.21e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 75.78 E-value: 5.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 10 WLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWrdtfgaplaFS 89
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP---------GL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 90 FTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIG 169
Cdd:cd06261 73 GLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 500024773 170 GNIPGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSL 207
Cdd:cd06261 153 GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
8-223 |
1.03e-12 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 65.54 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSRsQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRDTFG-APL 86
Cdd:COG1175 77 ALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGlEPI 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 87 AF------SFTGLLLASILYSLPFVVQPLTSAFVNMgNKEL-EAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTL 159
Cdd:COG1175 156 NWlgdpslALPAVIIVTVWKGTGFNMLIFLAGLQSI-PRELyEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGAL 234
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500024773 160 GEFGVV-LMIGGNIPGETQVLSIALFDhvetMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRR 223
Cdd:COG1175 235 QVFDLVyVLTGGGPGNSTTTLVLYIYQ----TAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
6-226 |
3.38e-12 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 65.09 E-value: 3.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 6 LLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWwrdtFGAP 85
Cdd:TIGR03262 53 LQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGL----LGGF 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 86 LAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVV 165
Cdd:TIGR03262 129 SIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVP 208
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500024773 166 LMIGGNIPgetqVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQRRLFG 226
Cdd:TIGR03262 209 KVIGGDYN----VLATDIYKQVIGQQNFPMGAVVGVLLLLPALLAFGIDRAIQRRQRAQLS 265
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
9-170 |
1.35e-11 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 62.40 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 9 VWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLvLPPTVLGFYLLLAFSPSYGLGAW---WRDTFGAP 85
Cdd:PRK09497 65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPF-WTNSLIRIYGLKIFLSTKGYLNEfllWLGVIDTP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 86 LAFSFT--GLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFG 163
Cdd:PRK09497 144 IRIMFTesAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFY 223
|
....*..
gi 500024773 164 VVLMIGG 170
Cdd:PRK09497 224 VSDLLGG 230
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
2-169 |
1.72e-11 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 62.33 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 2 SEGDLLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRDT 81
Cdd:PRK15050 68 SPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRL 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 82 FGA---PLAFSFT--GLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFA 156
Cdd:PRK15050 148 FGLeapPLDFLYSpgGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
|
170
....*....|...
gi 500024773 157 HTLGEFGVVLMIG 169
Cdd:PRK15050 228 LTLNEFGIVLFTG 240
|
|
| YnjC |
COG4135 |
ABC-type uncharacterized transport system YnjBCD, permease component [General function ... |
1-170 |
2.74e-09 |
|
ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];
Pssm-ID: 443310 [Multi-domain] Cd Length: 564 Bit Score: 56.42 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 1 MSEGDLLA--VWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWW 78
Cdd:COG4135 348 QRAAPGLLepLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWL 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 79 rdtfgaplafsftGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHT 158
Cdd:COG4135 428 -------------AVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVS 494
|
170
....*....|..
gi 500024773 159 LGEFGVVLMIGG 170
Cdd:COG4135 495 VAQYLPTLLIGA 506
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
12-182 |
4.95e-09 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 54.09 E-value: 4.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 12 TLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWwrdtfgaPLAFSFT 91
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 92 GLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVmAAALGFAHTLGEFGVVLMIGGN 171
Cdd:NF038017 74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFALLA-AVLAGFGRAISEVGAVMMVGGN 152
|
170
....*....|.
gi 500024773 172 IPGETQVLSIA 182
Cdd:NF038017 153 IRGYTRVLTTA 163
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
8-222 |
2.93e-08 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 52.68 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSpsyglgawwrdTFGAPLA 87
Cdd:PRK09500 58 AAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFM-----------LLGIQLG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 88 FsFTgLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLM 167
Cdd:PRK09500 127 F-WS-LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSF 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 500024773 168 IGGnipGETQVLSIALFDHVETMDYQNAHLLAGGLMGFSLVMLVLVYGVLQRRQR 222
Cdd:PRK09500 205 VTG---PSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLARDKTK 256
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
41-221 |
3.17e-08 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 52.65 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 41 LRPVVEALVALPLVlpptVLGFYLLLAFSPsyglgaWWRDTFGAPLA-------FSFTGLLLASILYS---LPFVVQPLT 110
Cdd:TIGR02138 102 LKPVVELLAGIPSV----VYGFWGLFVLVP------FLKPHFQPFLGsnlglipLFGGPILTAGIVLAimiLPTIASISR 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 111 SAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGNI----------PGETQVLS 180
Cdd:TIGR02138 172 DALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVfpisplslfdPGTTITSL 251
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 500024773 181 IAL-FDHVETMDYQNAHLLAGG--LMGFSLVMLVLVYGVLQRRQ 221
Cdd:TIGR02138 252 IANqFGEASGGSVHTSALFALGlvLFVITLLVNILARYIVRRRR 295
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
6-220 |
3.67e-08 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 52.41 E-value: 3.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 6 LLAVWLTLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPLVLPPTVL--GFYLLLAfspsyGLGawWRDTFg 83
Cdd:COG0395 73 GRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLliPLYLLFR-----QLG--LLNTY- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 84 aplafsfTGLLLASILYSLPFVVQPLTSAFVNMgNKELEAAATL-GLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEF 162
Cdd:COG0395 145 -------WGLILPYLAFGLPFGIFLLRQFFRSI-PRELEEAARIdGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDF 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 500024773 163 GVVLMIGGNipGETQVLSIALFDHVETMDYQNAHLLAGGLMgfSLVMLVLVYGVLQRR 220
Cdd:COG0395 217 LWPLILLTS--PDLRTLPVGLASFQGQYGTDWGLLMAAAVI--ATLPVLILFLFLQRY 270
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
8-165 |
4.27e-08 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 52.91 E-value: 4.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAW----WLSRSQHRLRPVVEALVALPLVLPPTVL--GFYLLLafspsyglgawwRDT 81
Cdd:PRK09433 320 ALWTSLRIALAAALLAVVLTMMLLWssreLRLRQRKLAAQALELSGMLILAMPGIVLatGLFLLL------------RNT 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 82 FGAP-LAFSFTGLLLAsiLYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLG 160
Cdd:PRK09433 388 TDLPaSALGIVILTNA--LMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLG 465
|
....*
gi 500024773 161 EFGVV 165
Cdd:PRK09433 466 DFGVI 470
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
12-170 |
1.07e-07 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 51.25 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 12 TLRLAASTTAILLLLSPPLAWWLSRSQHRLRPVVEALVALPlVLPPTVLGFYLLLAFSPSYGL---GAWWRDTFGAPLAF 88
Cdd:PRK10683 102 SLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILP-SWTSFLIRVYAWMGILKNNGVlnnFLLWLGVIDQPLTI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 89 SFTGL-LLASILYS-LPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVL 166
Cdd:PRK10683 181 LHTNLaVYIGIVYAyLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPE 260
|
....
gi 500024773 167 MIGG 170
Cdd:PRK10683 261 LLGG 264
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
25-170 |
1.86e-06 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 47.91 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 25 LLSPPLAWWLSRSQHRL----RPVVEALVALPLVLPPTVLGFYLLLAFSPSyGLGAWWRDTFGAPLAFSFTGL---LLAS 97
Cdd:PRK09433 58 LLSVLPAIPLARALYRRrfpgRGLLLRLCAMTLVLPVLVAVFGLLSVYGRS-GWLAQLLQALGLEWPFSIYGLqgiLLAH 136
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500024773 98 ILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGG 170
Cdd:PRK09433 137 VFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFTSFATVLTLGG 209
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
40-223 |
2.57e-05 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 43.44 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 40 RLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYglgawwrdtfgapLAFSFTGLLLASILYSLPFVVQPLTSAFVNMGNK 119
Cdd:pfam00528 15 RLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-------------LGHGILPAIILALLGWAGYARLIRRAALRSLPSD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 120 ELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGnIPGETQVLSIALFDHVETMDYQNAHLLA 199
Cdd:pfam00528 82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGS-WPGLGLLLIEAILGYDYPEIQGPVLAAA 160
|
170 180
....*....|....*....|....
gi 500024773 200 GGLMGFSLVMLVLvYGVLQRRQRR 223
Cdd:pfam00528 161 LILLLLNLLVDIL-QRLLDPRVRK 183
|
|
| PRK10592 |
PRK10592 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
8-176 |
6.62e-04 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182574 Cd Length: 281 Bit Score: 39.84 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 8 AVWLTLRLAASTTAILLLLSPPLAWWLSR-SQHRLRPVVEALVALPLVLPPTVLGFYLLLAFspsYGLGawwrDTFGAPL 86
Cdd:PRK10592 64 AVGLSLTIAACAATAAAILGTIAAVVMVRfGRFRGSNGFAFMITAPLVMPDVITGLSLLLLF---VALA----HAIGWPA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 87 AFSFTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVL 166
Cdd:PRK10592 137 DRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIAS 216
|
170
....*....|
gi 500024773 167 MIGGniPGET 176
Cdd:PRK10592 217 FVSG--PGAT 224
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
6-145 |
2.95e-03 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 37.88 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 6 LLAVWLTLRLAASTTAILLLLSPPLAWwLSRSQHRLRPVVEALVALPLVLPPTVLGFYLLLAFSPSYGLGAWWRDTFGAP 85
Cdd:PRK10561 54 LDSFWTTIKFSTLVTVSGLLVSLFFAA-LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYD 132
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500024773 86 LAFSFTG------LLLASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPLERFFHIILPMTLP 145
Cdd:PRK10561 133 WNHAQNSgqamflVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 198
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
48-181 |
3.94e-03 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 37.98 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500024773 48 LVALPLVLPPTVLGFYLLLAFSPSyGLGAWWRDTFGAPLAFS---FTGLLLASILYSLPFVVQPLTSAFVNMGNKELEAA 124
Cdd:TIGR01253 88 LCALTFILPALVAIFGIIGIYGRQ-GWLATLANLFGLEWQFHiygLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLA 166
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 500024773 125 ATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGNIPGETQVLSI 181
Cdd:TIGR01253 167 AQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQATTIELAI 223
|
|
| |
