|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS5_3 |
NF033580 |
IS5 family transposase; |
3-248 |
8.04e-103 |
|
IS5 family transposase;
Pssm-ID: 468097 [Multi-domain] Cd Length: 257 Bit Score: 299.10 E-value: 8.04e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 3 RTMLTDEYWSKLIRLM----LKTGRVydKPEHRNTFEGILYRMRVGCPWRDVPEAFGDWSAIYRRFNLWSKKGILMQLFA 78
Cdd:NF033580 2 RSDLTDEQWERIEPLLpparRGGGRR--RVDDREVLNAILYVLRTGCPWRDLPERFGPWSTVYRRFRRWSEAGVWERLFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 79 ELRQLA--DLEWEFIDGSIVKAHQHATGARS---EDKEAIGKSRGGNTTKIHMAVDSCGLPIDFIVTGGEVHDSKAAIEL 153
Cdd:NF033580 80 ALLAELriDWERLAIDSTIVRAHQSAAGAKKtgpNGYQAIGRSKGGLKTKIHIAVDALGLPLAFVLTGANVHDSKGALPL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 154 LKQLP-----DAEHVIADRGYDSEKIREQIREKKGVPNIPRKRNSKigNGDIDWCLYKYRHLVENVFARLKHYRSVATRY 228
Cdd:NF033580 160 LDGLPvlrppRPKHLLADKGYDSDALRAALRERGAVPVIPRRRNRL--RPAYDFRLYKKRWVVERTFAWLKRFRRLATRY 237
|
250 260
....*....|....*....|
gi 500113337 229 DKLARNYASTLALACCLIWL 248
Cdd:NF033580 238 EKLARNFLAFVHLACIRIWL 257
|
|
| COG3293 |
COG3293 |
Transposase [Mobilome: prophages, transposons]; |
4-100 |
9.51e-24 |
|
Transposase [Mobilome: prophages, transposons];
Pssm-ID: 442522 [Multi-domain] Cd Length: 98 Bit Score: 91.57 E-value: 9.51e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 4 TMLTDEYWSK---LIRLMLKTGRVYdkPEHRNTFEGILYRMRVGCPWRDVPEAFGDWSAIYRRFNLWSKKGILMQLFAEL 80
Cdd:COG3293 7 VDLTDAQWARiepLLPGPDKGGRPR--HDDREVVNAILYVLRTGCPWRDLPRDFGPWRTVERRFRRWRRLGRWERLAEAL 84
|
90 100
....*....|....*....|
gi 500113337 81 RQLadleweFIDGSIVKAHQ 100
Cdd:COG3293 85 LAA------VIDASSVRAHQ 98
|
|
| DUF4096 |
pfam13340 |
Putative transposase of IS4/5 family (DUF4096); |
6-77 |
3.24e-22 |
|
Putative transposase of IS4/5 family (DUF4096);
Pssm-ID: 433130 Cd Length: 76 Bit Score: 86.78 E-value: 3.24e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500113337 6 LTDEYWSKLIRLMLKTGRVYD----KPEHRNTFEGILYRMRVGCPWRDVPEAFGDWSAIYRRFNLWSKKGILMQLF 77
Cdd:pfam13340 1 LTDEQWARIEPLLPPPKRRGDgrprKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAGVWERLH 76
|
|
| transpos_IS5_4 |
NF033581 |
IS5 family transposase; |
37-245 |
3.83e-18 |
|
IS5 family transposase;
Pssm-ID: 468098 [Multi-domain] Cd Length: 284 Bit Score: 81.21 E-value: 3.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 37 ILYRMRVGCPWRDVPeafgDWSAIYRRFNLWSKKGILMQLFAEL-RQLADLEWEF-----IDGSIVKA-HQHATGARSED 109
Cdd:NF033581 63 LSFRAFVGLSEDDVP----DASTIWRFRELLEEHLLAEALFAEVnRQLLAKGLLSkegviVDATLIPApRSPKKRDKKRD 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 110 KEAIGKSRGGN---TTKIHMAVDS-CGLPIDFIVTGGEVHDSKAAIELLKqlPDAEHVIADRGYDSEKIREQIREKKGVP 185
Cdd:NF033581 139 PDMRQTKKGKKsrhGYKAHIGVDPkSGLVHSLVTTPANVHDSRAAKELLH--GDEKTVYADKGYDGDEGYQGLREAGVKP 216
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500113337 186 NIPRK--RNSKIGNGDIdwCLYKY----RHLVENVFARLK-HYRSVATRYDKLARNYASTLALACCL 245
Cdd:NF033581 217 HIPRKksRNRPLTEAQK--RRNRLkskiRARVEHVFGVLKrFFGLSKVRYRGLKRVGARFNLIAALY 281
|
|
| transpos_IS5_2 |
NF033579 |
IS5 family transposase; |
17-220 |
1.53e-17 |
|
IS5 family transposase;
Pssm-ID: 468096 [Multi-domain] Cd Length: 287 Bit Score: 79.64 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 17 LMLKtgrVYDKPEHRNTfEGILYRM--RVGCPWRdVPeafgDWSAIYRRFnlwskKGILMQLFAELRQLADLEWEFIDGS 94
Cdd:NF033579 51 LLLK---VLFGLPLRQT-QGLLNSLfkLIGLDLA-VP----DYSTLCRRF-----KRLKVAIPLSAKLLGGPLHLAIDST 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 95 IVKAHQhatgaRSEDK-EAIGKSRGGNTTKIHMAVDSCGLPI-DFIVTGGEVHDSKAAIELLKQLP-DAEHVIADRGYDS 171
Cdd:NF033579 117 GFKVYG-----EGEWYrRKHGKEKRRQWRKVHLAVDVKTGEIlAVEVTTNKVHDAKVLPDLLRQIPeDIDSVLADGAYDT 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500113337 172 EKIREQIREKKGVPNIPRKRNSKIG------NGDID------------WCLYKYRHLVENVFARLKH 220
Cdd:NF033579 192 KKCHEAIRERGARPLIPPRKNARLWkegkarNAAIReirrlgrelwkkWSGYHRRSLVETAFSRLKR 258
|
|
| transpos_IS982 |
NF033520 |
IS982 family transposase; Currently, there are 46 seed sequences in this family. |
61-219 |
2.24e-12 |
|
IS982 family transposase; Currently, there are 46 seed sequences in this family.
Pssm-ID: 468056 [Multi-domain] Cd Length: 243 Bit Score: 64.56 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 61 YRRFN------LWSKKGILMQLFAELRQLADLeWEFIDGS------IVKAHQHATGArseDKEAIGKSRGGNTT----KI 124
Cdd:NF033520 41 YSRFNrrcrrlLPLIEAIRQELAKKTKSEETG-IAIIDSTpipvchNKRIKRHKVFK---GIADRGYCASKKGWfygfKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 125 HMAVDSCGLPIDFIVTGGEVHDSKAAIELLKQLPDAEHVIADRGYDSEKIREQIrEKKGVPNI-PRKRNSKIGN-GDIDW 202
Cdd:NF033520 117 HLLVNLSGEIVSYVITPANVHDRKVLEDLLLTKPLPGKLFGDKGYISKELQEKL-KEQGITLItPLRKNMKEKLeKPNDK 195
|
170
....*....|....*..
gi 500113337 203 CLYKYRHLVENVFARLK 219
Cdd:NF033520 196 LLLRKRKRIETVFSQLK 212
|
|
| transpos_IS1182 |
NF033551 |
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ... |
78-207 |
2.70e-10 |
|
IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.
Pssm-ID: 468080 [Multi-domain] Cd Length: 437 Bit Score: 59.65 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 78 AELRQLADLEWEFIDGSIVKAHQHATGARSE------DKEA-IGKSRGGNTT---KIHMAVDS-CGLPIDFIVTGGEVHD 146
Cdd:NF033551 164 LDELELAKEELEASAEAAKQRAEKALLAGKDrrvsttDPDArFMKKSNGGFWfgyNVQIAVDTeSGLIVAVEVTPGNGHD 243
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500113337 147 SKAAIELLKQLPDA-----EHVIADRGYDSEKIREQIREKKGVPNIPRKRNSKIGNGDIDWCLYKY 207
Cdd:NF033551 244 GGQLIPLLEQVEERlgllpEEVLADAGYGSEENLEALEERGIEPVIPYRRKGAFKPGRFRKDDFRY 309
|
|
| transpos_IS4_1 |
NF033592 |
IS4 family transposase; |
58-169 |
3.81e-08 |
|
IS4 family transposase;
Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 53.04 E-value: 3.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 58 SAIYRRFNLwSKKGILMQLFAEL-------RQLADLEWEF-----IDGSIVKAHQHATGARsedkeaigKSRGGNTT--- 122
Cdd:NF033592 67 SALSKARKR-LPVEFLKELFERLlaqlqlgQLLPRKLWRGlrvlaVDGTTIRLPDSLENWA--------PGRGGKNSfpg 137
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 500113337 123 -KIHMAVD-SCGLPIDFIVTGGEVHDSKAAIELLKQLPDAEHVIADRGY 169
Cdd:NF033592 138 vKLHLLYDlLSGLPLDAAITPGKTHERTLLRQLLETLPPGDLLLFDRGY 186
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS5_3 |
NF033580 |
IS5 family transposase; |
3-248 |
8.04e-103 |
|
IS5 family transposase;
Pssm-ID: 468097 [Multi-domain] Cd Length: 257 Bit Score: 299.10 E-value: 8.04e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 3 RTMLTDEYWSKLIRLM----LKTGRVydKPEHRNTFEGILYRMRVGCPWRDVPEAFGDWSAIYRRFNLWSKKGILMQLFA 78
Cdd:NF033580 2 RSDLTDEQWERIEPLLpparRGGGRR--RVDDREVLNAILYVLRTGCPWRDLPERFGPWSTVYRRFRRWSEAGVWERLFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 79 ELRQLA--DLEWEFIDGSIVKAHQHATGARS---EDKEAIGKSRGGNTTKIHMAVDSCGLPIDFIVTGGEVHDSKAAIEL 153
Cdd:NF033580 80 ALLAELriDWERLAIDSTIVRAHQSAAGAKKtgpNGYQAIGRSKGGLKTKIHIAVDALGLPLAFVLTGANVHDSKGALPL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 154 LKQLP-----DAEHVIADRGYDSEKIREQIREKKGVPNIPRKRNSKigNGDIDWCLYKYRHLVENVFARLKHYRSVATRY 228
Cdd:NF033580 160 LDGLPvlrppRPKHLLADKGYDSDALRAALRERGAVPVIPRRRNRL--RPAYDFRLYKKRWVVERTFAWLKRFRRLATRY 237
|
250 260
....*....|....*....|
gi 500113337 229 DKLARNYASTLALACCLIWL 248
Cdd:NF033580 238 EKLARNFLAFVHLACIRIWL 257
|
|
| COG3293 |
COG3293 |
Transposase [Mobilome: prophages, transposons]; |
4-100 |
9.51e-24 |
|
Transposase [Mobilome: prophages, transposons];
Pssm-ID: 442522 [Multi-domain] Cd Length: 98 Bit Score: 91.57 E-value: 9.51e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 4 TMLTDEYWSK---LIRLMLKTGRVYdkPEHRNTFEGILYRMRVGCPWRDVPEAFGDWSAIYRRFNLWSKKGILMQLFAEL 80
Cdd:COG3293 7 VDLTDAQWARiepLLPGPDKGGRPR--HDDREVVNAILYVLRTGCPWRDLPRDFGPWRTVERRFRRWRRLGRWERLAEAL 84
|
90 100
....*....|....*....|
gi 500113337 81 RQLadleweFIDGSIVKAHQ 100
Cdd:COG3293 85 LAA------VIDASSVRAHQ 98
|
|
| DUF4096 |
pfam13340 |
Putative transposase of IS4/5 family (DUF4096); |
6-77 |
3.24e-22 |
|
Putative transposase of IS4/5 family (DUF4096);
Pssm-ID: 433130 Cd Length: 76 Bit Score: 86.78 E-value: 3.24e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500113337 6 LTDEYWSKLIRLMLKTGRVYD----KPEHRNTFEGILYRMRVGCPWRDVPEAFGDWSAIYRRFNLWSKKGILMQLF 77
Cdd:pfam13340 1 LTDEQWARIEPLLPPPKRRGDgrprKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAGVWERLH 76
|
|
| DDE_Tnp_1 |
pfam01609 |
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
91-245 |
5.28e-19 |
|
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.
Pssm-ID: 376573 [Multi-domain] Cd Length: 196 Bit Score: 81.91 E-value: 5.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 91 IDGSIVKAHQHATGARSEDKEaiGKSRGGntTKIHMAVD-SCGLPIDFIVTGGEVHDSKAAIELLKQLPDAEH--VIADR 167
Cdd:pfam01609 9 IDSTTIRTPGTGEDARWGYDG--GKRRYG--YKLHIAVDtRTGLILAVVLTPGNVHDSKGLLQLLDELRRRKGrlVLADA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 168 GYDSEKIREQIREKKGVPNIPRKRNSKIGNGDID--------------------------------WCLYKYRHLVENVF 215
Cdd:pfam01609 85 GYGGKELLDKLEEKGVDYLIRLKKNAKLIDDKRRgrlrkhgklkiltkvdklkgrvnstllsaetlAELYRRRWQIERVF 164
|
170 180 190
....*....|....*....|....*....|.
gi 500113337 216 ARLK-HYRSVATRYDKLARNYASTLALACCL 245
Cdd:pfam01609 165 KWLKrVFGLDRLRYRGLNAVEAELLLLALAY 195
|
|
| transpos_IS5_4 |
NF033581 |
IS5 family transposase; |
37-245 |
3.83e-18 |
|
IS5 family transposase;
Pssm-ID: 468098 [Multi-domain] Cd Length: 284 Bit Score: 81.21 E-value: 3.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 37 ILYRMRVGCPWRDVPeafgDWSAIYRRFNLWSKKGILMQLFAEL-RQLADLEWEF-----IDGSIVKA-HQHATGARSED 109
Cdd:NF033581 63 LSFRAFVGLSEDDVP----DASTIWRFRELLEEHLLAEALFAEVnRQLLAKGLLSkegviVDATLIPApRSPKKRDKKRD 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 110 KEAIGKSRGGN---TTKIHMAVDS-CGLPIDFIVTGGEVHDSKAAIELLKqlPDAEHVIADRGYDSEKIREQIREKKGVP 185
Cdd:NF033581 139 PDMRQTKKGKKsrhGYKAHIGVDPkSGLVHSLVTTPANVHDSRAAKELLH--GDEKTVYADKGYDGDEGYQGLREAGVKP 216
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500113337 186 NIPRK--RNSKIGNGDIdwCLYKY----RHLVENVFARLK-HYRSVATRYDKLARNYASTLALACCL 245
Cdd:NF033581 217 HIPRKksRNRPLTEAQK--RRNRLkskiRARVEHVFGVLKrFFGLSKVRYRGLKRVGARFNLIAALY 281
|
|
| transpos_IS5_2 |
NF033579 |
IS5 family transposase; |
17-220 |
1.53e-17 |
|
IS5 family transposase;
Pssm-ID: 468096 [Multi-domain] Cd Length: 287 Bit Score: 79.64 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 17 LMLKtgrVYDKPEHRNTfEGILYRM--RVGCPWRdVPeafgDWSAIYRRFnlwskKGILMQLFAELRQLADLEWEFIDGS 94
Cdd:NF033579 51 LLLK---VLFGLPLRQT-QGLLNSLfkLIGLDLA-VP----DYSTLCRRF-----KRLKVAIPLSAKLLGGPLHLAIDST 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 95 IVKAHQhatgaRSEDK-EAIGKSRGGNTTKIHMAVDSCGLPI-DFIVTGGEVHDSKAAIELLKQLP-DAEHVIADRGYDS 171
Cdd:NF033579 117 GFKVYG-----EGEWYrRKHGKEKRRQWRKVHLAVDVKTGEIlAVEVTTNKVHDAKVLPDLLRQIPeDIDSVLADGAYDT 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500113337 172 EKIREQIREKKGVPNIPRKRNSKIG------NGDID------------WCLYKYRHLVENVFARLKH 220
Cdd:NF033579 192 KKCHEAIRERGARPLIPPRKNARLWkegkarNAAIReirrlgrelwkkWSGYHRRSLVETAFSRLKR 258
|
|
| transpos_IS982 |
NF033520 |
IS982 family transposase; Currently, there are 46 seed sequences in this family. |
61-219 |
2.24e-12 |
|
IS982 family transposase; Currently, there are 46 seed sequences in this family.
Pssm-ID: 468056 [Multi-domain] Cd Length: 243 Bit Score: 64.56 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 61 YRRFN------LWSKKGILMQLFAELRQLADLeWEFIDGS------IVKAHQHATGArseDKEAIGKSRGGNTT----KI 124
Cdd:NF033520 41 YSRFNrrcrrlLPLIEAIRQELAKKTKSEETG-IAIIDSTpipvchNKRIKRHKVFK---GIADRGYCASKKGWfygfKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 125 HMAVDSCGLPIDFIVTGGEVHDSKAAIELLKQLPDAEHVIADRGYDSEKIREQIrEKKGVPNI-PRKRNSKIGN-GDIDW 202
Cdd:NF033520 117 HLLVNLSGEIVSYVITPANVHDRKVLEDLLLTKPLPGKLFGDKGYISKELQEKL-KEQGITLItPLRKNMKEKLeKPNDK 195
|
170
....*....|....*..
gi 500113337 203 CLYKYRHLVENVFARLK 219
Cdd:NF033520 196 LLLRKRKRIETVFSQLK 212
|
|
| IS5 |
COG3039 |
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons]; |
63-248 |
2.29e-12 |
|
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
Pssm-ID: 442273 [Multi-domain] Cd Length: 316 Bit Score: 65.28 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 63 RF-NLWSKKGILMQLFAEL-RQLADLEWEF-----IDGSIVKAH-QHATGARSEDKEAIGKSRGGNTT---KIHMAVDS- 130
Cdd:COG3039 107 RFrHLLEEHGLGEALFEEVnAQLSEKGLILrkgtiVDATIIAAPsSTKNKDRQRDPDAHQTKKGNQWYfgyKAHIGVDAd 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 131 CGLPIDFIVTGGEVHDSKAAIELLKQlpDAEHVIADRGYDSEKIREQIREKKGVPNIPRK--RNSKIGNGD--IDWCLYK 206
Cdd:COG3039 187 SGLIHTVVTTAANVHDVTHLDELLHG--EETDVYADKGYQGAEKREELKARGIRWHIARKpgRNKPLSELQkrRNRRKAK 264
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 500113337 207 YRHLVENVFARLK-HYRSVATRYDKLARN-YASTLALACCLIWL 248
Cdd:COG3039 265 VRAKVEHPFGVIKrLFGYKKVRYRGLAKNtAQLFLLAALYNLKR 308
|
|
| transpos_IS1182 |
NF033551 |
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ... |
78-207 |
2.70e-10 |
|
IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.
Pssm-ID: 468080 [Multi-domain] Cd Length: 437 Bit Score: 59.65 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 78 AELRQLADLEWEFIDGSIVKAHQHATGARSE------DKEA-IGKSRGGNTT---KIHMAVDS-CGLPIDFIVTGGEVHD 146
Cdd:NF033551 164 LDELELAKEELEASAEAAKQRAEKALLAGKDrrvsttDPDArFMKKSNGGFWfgyNVQIAVDTeSGLIVAVEVTPGNGHD 243
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500113337 147 SKAAIELLKQLPDA-----EHVIADRGYDSEKIREQIREKKGVPNIPRKRNSKIGNGDIDWCLYKY 207
Cdd:NF033551 244 GGQLIPLLEQVEERlgllpEEVLADAGYGSEENLEALEERGIEPVIPYRRKGAFKPGRFRKDDFRY 309
|
|
| transpos_IS4_1 |
NF033592 |
IS4 family transposase; |
58-169 |
3.81e-08 |
|
IS4 family transposase;
Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 53.04 E-value: 3.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 58 SAIYRRFNLwSKKGILMQLFAEL-------RQLADLEWEF-----IDGSIVKAHQHATGARsedkeaigKSRGGNTT--- 122
Cdd:NF033592 67 SALSKARKR-LPVEFLKELFERLlaqlqlgQLLPRKLWRGlrvlaVDGTTIRLPDSLENWA--------PGRGGKNSfpg 137
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 500113337 123 -KIHMAVD-SCGLPIDFIVTGGEVHDSKAAIELLKQLPDAEHVIADRGY 169
Cdd:NF033592 138 vKLHLLYDlLSGLPLDAAITPGKTHERTLLRQLLETLPPGDLLLFDRGY 186
|
|
| DDE_Tnp_1_2 |
pfam13586 |
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
163-248 |
7.26e-08 |
|
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.
Pssm-ID: 463928 [Multi-domain] Cd Length: 90 Bit Score: 48.95 E-value: 7.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 163 VIADRGYDSEKIREQIRE---KKGVPNIPRKRNSKIGNGDIDWCLYKYRHLVENVFARLKHYRSVATRYDKLARNYASTL 239
Cdd:pfam13586 1 VHVDRGYRTRHNREWLKErgiRASGPPLGRPAKNKAQEKKQAREDEIARNVIEGKFGWFKRRRSLAKRYEKLASTFEGAI 80
|
....*....
gi 500113337 240 ALACCLIWL 248
Cdd:pfam13586 81 ALTFLVINL 89
|
|
| DDE_Tnp_4 |
pfam13359 |
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ... |
117-245 |
1.97e-06 |
|
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.
Pssm-ID: 463855 [Multi-domain] Cd Length: 158 Bit Score: 46.50 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 117 RGGNTTKIHMAVDSCGLPIDFIVT-GGEVHDSKAAIE--LLKQL----PDAEHVIADRGYD-SEKIR--EQIREKKGVPN 186
Cdd:pfam13359 25 KHHNTLKVLIVVTPNGKIIFVSKGyPGSVSDKSILENsgLLKALnlafGPGDYILADKGFPiSDWLLvpYKKPGGAQLSP 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500113337 187 IPRKRNSKIGngdidwclyKYRHLVENVFARLKH-YRSVATRYD-KLARNYASTLALACCL 245
Cdd:pfam13359 105 EEVEFNRRIA---------SARIHVERVIGRLKGrFRILRGRLPiSLPERLDKIVTVCCVL 156
|
|
| DDE_Tnp_1_3 |
pfam13612 |
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
117-219 |
7.13e-06 |
|
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.
Pssm-ID: 433348 Cd Length: 154 Bit Score: 44.62 E-value: 7.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500113337 117 RGGNTT------KIHMAVDSCGLPIDFIVTGGEVHDSKAAIELLKQLPDaeHVIADRGYDSEKIREQIREkKGVPNIPRK 190
Cdd:pfam13612 34 RGKSSMgwfygfKLHLIINDRGEILAFKLTPGNVDDRKPVETLSKGLFG--KLFGDKGYISQKLFDQLLE-DGIELITNL 110
|
90 100 110
....*....|....*....|....*....|..
gi 500113337 191 RNsKIGNGDI---DWCLYKYRHLVENVFARLK 219
Cdd:pfam13612 111 RK-NMKNKLMslwDKALLRKRSLIETVNDQLK 141
|
|
| |
