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Conserved domains on  [gi|500187316|ref|WP_011860673|]
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CTP--phosphocholine cytidylyltransferase [Clostridioides difficile]

Protein Classification

LicC family protein( domain architecture ID 10790888)

LicC family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LicC COG4750
CTP:phosphocholine cytidylyltransferase LicC [Cell wall/membrane/envelope biogenesis, Lipid ...
1-228 3.86e-105

CTP:phosphocholine cytidylyltransferase LicC [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


:

Pssm-ID: 443784 [Multi-domain]  Cd Length: 228  Bit Score: 303.29  E-value: 3.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIYNNKYDIY 80
Cdd:COG4750    1 MNAIILAAGLGSRFAPITYETPKGLLKVNGEPLIERQIRQLHEAGITDITVVVGYLKEQFEYLEDKYGVKLIYNPDYAEY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316  81 NNIYTMYLLREHLPDSYVIEGDVYICNNFIDPDIKESTYFTLYKENFNNEFIFKFDENNKVYDMYVGDNKGYILCGVSYW 160
Cdd:COG4750   81 NNISSLYLVRDKLGNTYICSSDNYLTENPFEKYEYKSYYSAVYKEGETDEWCVKTNRDGRITKIEIGGKDGWIMLGHSYW 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500187316 161 SLTDGNIIAKKLEETIENGDFESLFWDDVVMKNKDALNMYIQKIDFKDCFEIDNEKDLRFSEKCIVQN 228
Cdd:COG4750  161 DKEDSKKFKEILEEEYEDPETRDLYWEDIYMDHIDELDMYARKYPAGDIYEFDSLDELREFDPSYLEN 228
 
Name Accession Description Interval E-value
LicC COG4750
CTP:phosphocholine cytidylyltransferase LicC [Cell wall/membrane/envelope biogenesis, Lipid ...
1-228 3.86e-105

CTP:phosphocholine cytidylyltransferase LicC [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 443784 [Multi-domain]  Cd Length: 228  Bit Score: 303.29  E-value: 3.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIYNNKYDIY 80
Cdd:COG4750    1 MNAIILAAGLGSRFAPITYETPKGLLKVNGEPLIERQIRQLHEAGITDITVVVGYLKEQFEYLEDKYGVKLIYNPDYAEY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316  81 NNIYTMYLLREHLPDSYVIEGDVYICNNFIDPDIKESTYFTLYKENFNNEFIFKFDENNKVYDMYVGDNKGYILCGVSYW 160
Cdd:COG4750   81 NNISSLYLVRDKLGNTYICSSDNYLTENPFEKYEYKSYYSAVYKEGETDEWCVKTNRDGRITKIEIGGKDGWIMLGHSYW 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500187316 161 SLTDGNIIAKKLEETIENGDFESLFWDDVVMKNKDALNMYIQKIDFKDCFEIDNEKDLRFSEKCIVQN 228
Cdd:COG4750  161 DKEDSKKFKEILEEEYEDPETRDLYWEDIYMDHIDELDMYARKYPAGDIYEFDSLDELREFDPSYLEN 228
PC_cytidylyltransferase cd02523
Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; This family ...
3-219 1.15e-57

Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.


Pssm-ID: 133014 [Multi-domain]  Cd Length: 229  Bit Score: 182.82  E-value: 1.15e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKY-NVELIYNNKYDIYN 81
Cdd:cd02523    1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYpNIKFVYNPDYAETN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316  82 NIYTMYLLREHL-PDSYVIEGDVYICNNFIDPDIKESTYFTLYKENFNNEFIFKFDE--NNKVYDMY------VGDNKGY 152
Cdd:cd02523   81 NIYSLYLARDFLdEDFLLLEGDVVFDPSILERLLSSPADNAILVDKKTKEWEDEYVKdlDDAGVLLGiiskakNLEEIQG 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316 153 ILCGVSYWSLTDGNIIAKKLEETIENGdFESLFWDDVVMKNKDALNMYIQKIDFKDCFEIDNEKDLR 219
Cdd:cd02523  161 EYVGISKFSPEDADRLAEALEELIEAG-RVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDLE 226
Arch_glmU TIGR03992
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; The ...
1-59 2.47e-19

UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them.


Pssm-ID: 274908 [Multi-domain]  Cd Length: 393  Bit Score: 85.72  E-value: 2.47e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 500187316    1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:TIGR03992   1 MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEK 59
NTP_transferase pfam00483
Nucleotidyl transferase; This family includes a wide range of enzymes which transfer ...
2-55 1.50e-10

Nucleotidyl transferase; This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars.


Pssm-ID: 425709 [Multi-domain]  Cd Length: 243  Bit Score: 59.19  E-value: 1.50e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 500187316    2 KAIILAAGLGTRLKPLTSECPKPLV-KVNGKPMIETQIECLLEKGIKDIKVAVGY 55
Cdd:pfam00483   1 KAIILAGGSGTRLWPLTRTLAKPLVpVGGKYPLIDYPLSRLANAGIREIIVILTQ 55
glmU PRK14354
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
3-59 8.36e-10

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 184643 [Multi-domain]  Cd Length: 458  Bit Score: 58.30  E-value: 8.36e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:PRK14354   5 AIILAAGKGTRMK---SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEE 58
 
Name Accession Description Interval E-value
LicC COG4750
CTP:phosphocholine cytidylyltransferase LicC [Cell wall/membrane/envelope biogenesis, Lipid ...
1-228 3.86e-105

CTP:phosphocholine cytidylyltransferase LicC [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 443784 [Multi-domain]  Cd Length: 228  Bit Score: 303.29  E-value: 3.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIYNNKYDIY 80
Cdd:COG4750    1 MNAIILAAGLGSRFAPITYETPKGLLKVNGEPLIERQIRQLHEAGITDITVVVGYLKEQFEYLEDKYGVKLIYNPDYAEY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316  81 NNIYTMYLLREHLPDSYVIEGDVYICNNFIDPDIKESTYFTLYKENFNNEFIFKFDENNKVYDMYVGDNKGYILCGVSYW 160
Cdd:COG4750   81 NNISSLYLVRDKLGNTYICSSDNYLTENPFEKYEYKSYYSAVYKEGETDEWCVKTNRDGRITKIEIGGKDGWIMLGHSYW 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500187316 161 SLTDGNIIAKKLEETIENGDFESLFWDDVVMKNKDALNMYIQKIDFKDCFEIDNEKDLRFSEKCIVQN 228
Cdd:COG4750  161 DKEDSKKFKEILEEEYEDPETRDLYWEDIYMDHIDELDMYARKYPAGDIYEFDSLDELREFDPSYLEN 228
PC_cytidylyltransferase cd02523
Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; This family ...
3-219 1.15e-57

Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.


Pssm-ID: 133014 [Multi-domain]  Cd Length: 229  Bit Score: 182.82  E-value: 1.15e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKY-NVELIYNNKYDIYN 81
Cdd:cd02523    1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYpNIKFVYNPDYAETN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316  82 NIYTMYLLREHL-PDSYVIEGDVYICNNFIDPDIKESTYFTLYKENFNNEFIFKFDE--NNKVYDMY------VGDNKGY 152
Cdd:cd02523   81 NIYSLYLARDFLdEDFLLLEGDVVFDPSILERLLSSPADNAILVDKKTKEWEDEYVKdlDDAGVLLGiiskakNLEEIQG 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316 153 ILCGVSYWSLTDGNIIAKKLEETIENGdFESLFWDDVVMKNKDALNMYIQKIDFKDCFEIDNEKDLR 219
Cdd:cd02523  161 EYVGISKFSPEDADRLAEALEELIEAG-RVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDLE 226
COG1213 COG1213
Choline kinase [Lipid transport and metabolism];
2-219 2.10e-39

Choline kinase [Lipid transport and metabolism];


Pssm-ID: 440826 [Multi-domain]  Cd Length: 236  Bit Score: 136.14  E-value: 2.10e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   2 KAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKF--YYLAEKYNVELIYNNKYDI 79
Cdd:COG1213    1 KAVILAAGRGSRLGPLTDDIPKCLVEIGGKTLLERQLEALAAAGIKDIVVVTGYKAELIeeALARPGPDVTFVYNPDYDE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316  80 YNNIYTMYLLREHLPDSYVI-EGDVY------------------ICNNFIDPDIKESTYFTLykenfnnefifkfDENNK 140
Cdd:COG1213   81 TNNIYSLWLAREALDEDFLLlNGDVVfdpailkrllasdgdivlLVDRKWEKPLDEEVKVRV-------------DEDGR 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316 141 VYDMY--VGDNKG-YILCGVSYWSLTDGNIIAKKLEETIENGD----FESLFwDDVVmknKDALNMYIQKIDFKDCFEID 213
Cdd:COG1213  148 IVEIGkkLPPEEAdGEYIGIFKFSAEGAAALREALEALIDEGGpnlyYEDAL-QELI---DEGGPVKAVDIGGLPWVEID 223

                 ....*.
gi 500187316 214 NEKDLR 219
Cdd:COG1213  224 TPEDLE 229
GCD1 COG1208
NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis protein ...
2-116 6.18e-26

NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis protein s [Translation, ribosomal structure and biogenesis, Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440821 [Multi-domain]  Cd Length: 238  Bit Score: 101.00  E-value: 6.18e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   2 KAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFY-YLAE--KYNVELIYNNKYD 78
Cdd:COG1208    1 KAVILAGGLGTRLRPLTDTRPKPLLPVGGKPLLEHILERLAAAGITEIVINVGYLAEQIEeYFGDgsRFGVRITYVDEGE 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 500187316  79 IYNNIYTMYLLREHLPDS--YVIEGDVyicnnFIDPDIKE 116
Cdd:COG1208   81 PLGTGGALKRALPLLGDEpfLVLNGDI-----LTDLDLAA 115
NTP_transferase cd04181
NTP_transferases catalyze the transfer of nucleotides onto phosphosugars; ...
3-120 8.31e-24

NTP_transferases catalyze the transfer of nucleotides onto phosphosugars; Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.


Pssm-ID: 133024 [Multi-domain]  Cd Length: 217  Bit Score: 94.95  E-value: 8.31e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKF--YYLA-EKYNVELIYNNKYDI 79
Cdd:cd04181    1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIeeYFGDgSKFGVNIEYVVQEEP 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 500187316  80 YNNIYTMYLLREHLPDSY--VIEGDvyicnNFIDPDIKESTYF 120
Cdd:cd04181   81 LGTAGAVRNAEDFLGDDDflVVNGD-----VLTDLDLSELLRF 118
NTP_transferase_like_1 cd06422
NTP_transferase_like_1 is a member of the nucleotidyl transferase family; This is a subfamily ...
2-73 1.54e-19

NTP_transferase_like_1 is a member of the nucleotidyl transferase family; This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.


Pssm-ID: 133044 [Multi-domain]  Cd Length: 221  Bit Score: 83.77  E-value: 1.54e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500187316   2 KAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFY-YLAEK-YNVELIY 73
Cdd:cd06422    1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEaHLGDSrFGLRITI 74
Arch_glmU TIGR03992
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; The ...
1-59 2.47e-19

UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them.


Pssm-ID: 274908 [Multi-domain]  Cd Length: 393  Bit Score: 85.72  E-value: 2.47e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 500187316    1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:TIGR03992   1 MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEK 59
G1P_TT_long cd04189
G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase; This family ...
1-60 8.98e-19

G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase; This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose.


Pssm-ID: 133032 [Multi-domain]  Cd Length: 236  Bit Score: 81.85  E-value: 8.98e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKF 60
Cdd:cd04189    1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
NTP_transferase_WcbM_like cd06915
WcbM_like is a subfamily of nucleotidyl transferases; WcbM protein of Burkholderia mallei is ...
3-59 1.20e-18

WcbM_like is a subfamily of nucleotidyl transferases; WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.


Pssm-ID: 133065 [Multi-domain]  Cd Length: 223  Bit Score: 81.45  E-value: 1.20e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:cd06915    1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQ 57
M1P_guanylylT_B_like_N cd06425
N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins; GDP-mannose ...
1-73 4.79e-18

N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins; GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.


Pssm-ID: 133047 [Multi-domain]  Cd Length: 233  Bit Score: 79.95  E-value: 4.79e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKE------KFYylAEKYNVELIY 73
Cdd:cd06425    1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEdmvpflKEY--EKKLGIKITF 77
NTP_transferase_like_2 cd06426
NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family; This is a subfamily ...
3-77 5.49e-18

NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family; This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.


Pssm-ID: 133048 [Multi-domain]  Cd Length: 220  Bit Score: 79.48  E-value: 5.49e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKF-YYLAE----KYNVELIYNNKY 77
Cdd:cd06426    1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIeDYFGDgskfGVNISYVREDKP 80
rmlA_long TIGR01208
glucose-1-phosphate thymidylylransferase, long form; The family of known and putative ...
2-130 1.58e-16

glucose-1-phosphate thymidylylransferase, long form; The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase


Pssm-ID: 273500 [Multi-domain]  Cd Length: 353  Bit Score: 77.44  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316    2 KAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLK----EKFYYLAEKYNVELIYNNKY 77
Cdd:TIGR01208   1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTgeeiKEIVGEGERFGAKITYIVQG 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 500187316   78 DIYNNIYTMYLLREHLPDSYVIegdVYICNNFIDPDIKEstyftlYKENFNNE 130
Cdd:TIGR01208  81 EPLGLAHAVYTARDFLGDDDFV---VYLGDNLIQDGISR------FVKSFEEK 124
RmlA1 COG1209
dTDP-glucose pyrophosphorylase [Cell wall/membrane/envelope biogenesis];
1-60 3.66e-15

dTDP-glucose pyrophosphorylase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440822 [Multi-domain]  Cd Length: 294  Bit Score: 72.82  E-value: 3.66e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVG-YLKEKF 60
Cdd:COG1209    1 MKGIILAGGSGTRLRPLTLTVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTpEDGPQF 61
MocA COG2068
CTP:molybdopterin cytidylyltransferase MocA [Coenzyme transport and metabolism];
3-78 1.41e-11

CTP:molybdopterin cytidylyltransferase MocA [Coenzyme transport and metabolism];


Pssm-ID: 441671 [Multi-domain]  Cd Length: 195  Bit Score: 61.33  E-value: 1.41e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500187316   3 AIILAAGLGTRLKPltsecPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIYNNKYD 78
Cdd:COG2068    6 AIILAAGASSRMGR-----PKLLLPLGGKPLLERAVEAALAAGLDPVVVVLGADAEEVAAALAGLGVRVVVNPDWE 76
GT2_GlmU_N_bac cd02540
N-terminal domain of bacterial GlmU; The N-terminal domain of N-Acetylglucosamine-1-phosphate ...
3-73 2.72e-11

N-terminal domain of bacterial GlmU; The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.


Pssm-ID: 133020 [Multi-domain]  Cd Length: 229  Bit Score: 61.38  E-value: 2.72e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIY 73
Cdd:cd02540    1 AVILAAGKGTRMK---SDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVL 68
NTP_transferase pfam00483
Nucleotidyl transferase; This family includes a wide range of enzymes which transfer ...
2-55 1.50e-10

Nucleotidyl transferase; This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars.


Pssm-ID: 425709 [Multi-domain]  Cd Length: 243  Bit Score: 59.19  E-value: 1.50e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 500187316    2 KAIILAAGLGTRLKPLTSECPKPLV-KVNGKPMIETQIECLLEKGIKDIKVAVGY 55
Cdd:pfam00483   1 KAIILAGGSGTRLWPLTRTLAKPLVpVGGKYPLIDYPLSRLANAGIREIIVILTQ 55
eIF-2B_gamma_N_like cd02507
The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity; ...
1-68 1.72e-10

The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity; N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.


Pssm-ID: 133001 [Multi-domain]  Cd Length: 216  Bit Score: 58.80  E-value: 1.72e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVG--YLKEKFYYLAEKYN 68
Cdd:cd02507    1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCehSQAIIEHLLKSKWS 70
eIF-2B_gamma_N cd04198
The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2; ...
1-53 7.13e-10

The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2; N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.


Pssm-ID: 133041 [Multi-domain]  Cd Length: 214  Bit Score: 56.90  E-value: 7.13e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAV 53
Cdd:cd04198    1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVV 53
glmU PRK14354
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
3-59 8.36e-10

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 184643 [Multi-domain]  Cd Length: 458  Bit Score: 58.30  E-value: 8.36e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:PRK14354   5 AIILAAGKGTRMK---SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEE 58
GlmU COG1207
Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase ...
1-59 3.07e-09

Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440820 [Multi-domain]  Cd Length: 457  Bit Score: 56.57  E-value: 3.07e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:COG1207    3 LAVVILAAGKGTRMK---SKLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQ 58
UGPase_prokaryotic cd02541
Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Prokaryotic UDP-Glucose ...
1-79 3.74e-09

Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.


Pssm-ID: 133021 [Multi-domain]  Cd Length: 267  Bit Score: 55.62  E-value: 3.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLK---EKFYYLAEKYNVELIYNNKY 77
Cdd:cd02541    1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKraiEDHFDRSYELEETLEKKGKT 80

                 ..
gi 500187316  78 DI 79
Cdd:cd02541   81 DL 82
G1P_TT_short cd02538
G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; This family is ...
1-49 7.30e-09

G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.


Pssm-ID: 133019 [Multi-domain]  Cd Length: 240  Bit Score: 54.50  E-value: 7.30e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDI 49
Cdd:cd02538    1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREI 49
GT_2_like_f cd04182
GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function; ...
3-78 9.09e-09

GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133025 [Multi-domain]  Cd Length: 186  Bit Score: 53.33  E-value: 9.09e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500187316   3 AIILAAGLGTRLKPltsecPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIYNNKYD 78
Cdd:cd04182    3 AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPVVVVINPDWE 73
M1P_guanylylT_A_like_N cd06428
N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose ...
3-109 1.01e-07

N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase; N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation.


Pssm-ID: 133050 [Multi-domain]  Cd Length: 257  Bit Score: 51.10  E-value: 1.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500187316   3 AIILAAG--LGTRLKPLTSECPKPLVKVNGKPMIETQIECLLE-KGIKDIKVAVGYLKEKF--YYLAEK--YNVELIYNN 75
Cdd:cd06428    1 AVILVGGpqKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKvPDLKEVLLIGFYPESVFsdFISDAQqeFNVPIRYLQ 80
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 500187316  76 KYDIYNNIYTMYLLREHL----PDS-YVIEGDVyiCNNF 109
Cdd:cd06428   81 EYKPLGTAGGLYHFRDQIlagnPSAfFVLNADV--CCDF 117
NTP_transf_3 pfam12804
MobA-like NTP transferase domain; This family includes the MobA protein (Molybdopterin-guanine ...
3-74 1.12e-07

MobA-like NTP transferase domain; This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain.


Pssm-ID: 463715 [Multi-domain]  Cd Length: 159  Bit Score: 49.89  E-value: 1.12e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500187316    3 AIILAAGLGTRLKPltsecPKPLVKVNGKPMIETQIEcLLEKGIKDIKVAVGYlkEKFYYLAEKYNVELIYN 74
Cdd:pfam12804   1 AVILAGGRSSRMGG-----DKALLPLGGKPLLERVLE-RLRPAGDEVVVVAND--EEVLAALAGLGVPVVPD 64
COG2266 COG2266
GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme transport and metabolism]; GTP: ...
6-73 1.75e-07

GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme transport and metabolism]; GTP:adenosylcobinamide-phosphate guanylyltransferase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441867 [Multi-domain]  Cd Length: 185  Bit Score: 49.89  E-value: 1.75e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500187316   6 LAAGLGTRLKPltseCPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEKFYYLAEKYNVELIY 73
Cdd:COG2266    1 MAGGKGTRLGG----GEKPLLEICGKPMIDRVIDALEESCIDKIYVAVSPNTPKTREYLKERGVEVIE 64
CDP-ME_synthetase cd02516
CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; ...
3-53 4.83e-07

CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.


Pssm-ID: 133009 [Multi-domain]  Cd Length: 218  Bit Score: 49.06  E-value: 4.83e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLE-KGIKDIKVAV 53
Cdd:cd02516    3 AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAhPAIDEIVVVV 51
ispD PRK00155
D-ribitol-5-phosphate cytidylyltransferase;
3-53 1.32e-06

D-ribitol-5-phosphate cytidylyltransferase;


Pssm-ID: 234670  Cd Length: 227  Bit Score: 47.82  E-value: 1.32e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLE-KGIKDIKVAV 53
Cdd:PRK00155   6 AIIPAAGKGSRMG---ADRPKQYLPLGGKPILEHTLEAFLAhPRIDEIIVVV 54
glmU PRK14357
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
1-59 2.68e-06

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 237687 [Multi-domain]  Cd Length: 448  Bit Score: 47.45  E-value: 2.68e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKdIKVAVGYLKEK 59
Cdd:PRK14357   1 MRALVLAAGKGTRMK---SKIPKVLHKISGKPMINWVIDTAKKVAQK-VGVVLGHEAEL 55
IspD COG1211
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Lipid transport and metabolism]; ...
4-53 2.88e-06

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Lipid transport and metabolism]; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440824  Cd Length: 224  Bit Score: 46.66  E-value: 2.88e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 500187316   4 IILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLE-KGIKDIKVAV 53
Cdd:COG1211    1 IIPAAGSGSRMG---AGIPKQFLPLGGKPVLEHTLEAFLAhPRIDEIVVVV 48
glmU PRK14355
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
3-59 6.02e-06

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 237685 [Multi-domain]  Cd Length: 459  Bit Score: 46.66  E-value: 6.02e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:PRK14355   6 AIILAAGKGTRMK---SDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEK 59
glmU PRK14353
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
3-54 7.29e-06

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 184642 [Multi-domain]  Cd Length: 446  Bit Score: 46.39  E-value: 7.29e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 500187316   3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVG 54
Cdd:PRK14353   8 AIILAAGEGTRMK---SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVG 56
ispD TIGR00453
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Members of this protein family are ...
3-53 1.42e-05

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 213532  Cd Length: 217  Bit Score: 44.59  E-value: 1.42e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 500187316    3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLE-KGIKDIKVAV 53
Cdd:TIGR00453   2 AVIPAAGRGTRFG---SGVPKQYLELGGRPLLEHALDAFLAhPAIDEVVVVV 50
GalU COG1210
UTP-glucose-1-phosphate uridylyltransferase [Cell wall/membrane/envelope biogenesis];
2-49 1.70e-05

UTP-glucose-1-phosphate uridylyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440823 [Multi-domain]  Cd Length: 288  Bit Score: 44.64  E-value: 1.70e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 500187316   2 KAIILAAGLGTRLKPLTSECPK---PLVKvngKPMIETQIECLLEKGIKDI 49
Cdd:COG1210    5 KAVIPVAGLGTRFLPATKAIPKemlPIVD---KPLIQYVVEEAVAAGIEEI 52
PRK15480 PRK15480
glucose-1-phosphate thymidylyltransferase RfbA; Provisional
2-51 2.37e-05

glucose-1-phosphate thymidylyltransferase RfbA; Provisional


Pssm-ID: 185377 [Multi-domain]  Cd Length: 292  Bit Score: 44.28  E-value: 2.37e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 500187316   2 KAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKV 51
Cdd:PRK15480   5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILI 54
eIF-2B_epsilon_N cd04197
The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2; ...
3-49 2.49e-05

The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2; N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.


Pssm-ID: 133040 [Multi-domain]  Cd Length: 217  Bit Score: 43.75  E-value: 2.49e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDI 49
Cdd:cd04197    3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEV 49
PRK10122 PRK10122
UTP--glucose-1-phosphate uridylyltransferase GalF;
1-49 3.84e-05

UTP--glucose-1-phosphate uridylyltransferase GalF;


Pssm-ID: 182252 [Multi-domain]  Cd Length: 297  Bit Score: 43.72  E-value: 3.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDI 49
Cdd:PRK10122   4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEI 52
G1P_cytidylyltransferase cd02524
G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose; ...
3-63 4.04e-05

G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose; Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.


Pssm-ID: 133015 [Multi-domain]  Cd Length: 253  Bit Score: 43.71  E-value: 4.04e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGY----LKEKF--YYL 63
Cdd:cd02524    1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYkghvIKEYFlnYFL 67
glmU PRK14358
bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate ...
1-59 1.10e-04

bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional


Pssm-ID: 237688 [Multi-domain]  Cd Length: 481  Bit Score: 42.66  E-value: 1.10e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGYLKEK 59
Cdd:PRK14358   8 LDVVILAAGQGTRMK---SALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQ 63
glmU PRK14359
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
4-59 1.15e-04

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 237689 [Multi-domain]  Cd Length: 430  Bit Score: 42.67  E-value: 1.15e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 500187316   4 IILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKGiKDIKVAVGYLKEK 59
Cdd:PRK14359   6 IILAAGKGTRMK---SSLPKVLHTICGKPMLFYILKEAFAIS-DDVHVVLHHQKER 57
GDP-M1P_Guanylyltransferase cd02509
GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; GDP-mannose-1-phosphate ...
1-43 1.66e-04

GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.


Pssm-ID: 133003 [Multi-domain]  Cd Length: 274  Bit Score: 41.79  E-value: 1.66e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 500187316   1 MKAIILAAGLGTRLKPL-TSECPKPLVKVNG-KPMIETQIECLLE 43
Cdd:cd02509    1 IYPVILAGGSGTRLWPLsRESYPKQFLKLFGdKSLLQQTLDRLKG 45
MobA cd02503
MobA catalyzes the formation of molybdopterin guanine dinucleotide; The prokaryotic enzyme ...
1-41 1.98e-04

MobA catalyzes the formation of molybdopterin guanine dinucleotide; The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.


Pssm-ID: 133000 [Multi-domain]  Cd Length: 181  Bit Score: 41.02  E-value: 1.98e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 500187316   1 MKAIILAAGLGTRLKpltseCPKPLVKVNGKPMIETQIECL 41
Cdd:cd02503    1 ITGVILAGGKSRRMG-----GDKALLELGGKPLLEHVLERL 36
glmU PRK09451
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate ...
1-55 2.82e-04

bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;


Pssm-ID: 181867 [Multi-domain]  Cd Length: 456  Bit Score: 41.55  E-value: 2.82e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 500187316   1 MKAIILAAGLGTRlkpLTSECPKPLVKVNGKPMIETQIECLLEKGIKDIKVAVGY 55
Cdd:PRK09451   6 MSVVILAAGKGTR---MYSDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGH 57
PRK13389 PRK13389
UTP--glucose-1-phosphate uridylyltransferase GalU;
2-49 4.54e-04

UTP--glucose-1-phosphate uridylyltransferase GalU;


Pssm-ID: 184021 [Multi-domain]  Cd Length: 302  Bit Score: 40.66  E-value: 4.54e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 500187316   2 KAIILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIECLLEKGIKDI 49
Cdd:PRK13389  10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEI 57
GT2_BcE_like cd04183
GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule; ...
4-39 7.68e-04

GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule; GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.


Pssm-ID: 133026 [Multi-domain]  Cd Length: 231  Bit Score: 39.54  E-value: 7.68e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 500187316   4 IILAAGLGTRLKPLTSECPKPLVKVNGKPMIETQIE 39
Cdd:cd04183    2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIE 37
MobA COG0746
Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme transport and metabolism]; ...
1-41 1.22e-03

Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme transport and metabolism]; Molybdopterin-guanine dinucleotide biosynthesis protein A is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 440509 [Multi-domain]  Cd Length: 188  Bit Score: 38.63  E-value: 1.22e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 500187316   1 MKAIILAAGLGTRLKpltseCPKPLVKVNGKPMIETQIECL 41
Cdd:COG0746    5 ITGVILAGGRSRRMG-----QDKALLPLGGRPLLERVLERL 40
GlgC COG0448
Glucose-1-phosphate adenylyltransferase (ADP-glucose pyrophosphorylase) [Carbohydrate ...
3-31 3.00e-03

Glucose-1-phosphate adenylyltransferase (ADP-glucose pyrophosphorylase) [Carbohydrate transport and metabolism];


Pssm-ID: 440217 [Multi-domain]  Cd Length: 377  Bit Score: 38.13  E-value: 3.00e-03
                         10        20
                 ....*....|....*....|....*....
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGK 31
Cdd:COG0448    4 AIILAGGRGSRLGPLTKDRAKPAVPFGGK 32
CpsB COG0836
Mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis];
1-35 3.65e-03

Mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440598 [Multi-domain]  Cd Length: 347  Bit Score: 37.74  E-value: 3.65e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 500187316   1 MKAIILAAGLGTRLKPL-TSECPKPLVKVNG-KPMIE 35
Cdd:COG0836    3 IYPVILAGGSGTRLWPLsRESYPKQFLPLLGeKSLLQ 39
glgC PRK00725
glucose-1-phosphate adenylyltransferase; Provisional
3-31 4.04e-03

glucose-1-phosphate adenylyltransferase; Provisional


Pssm-ID: 234824 [Multi-domain]  Cd Length: 425  Bit Score: 37.90  E-value: 4.04e-03
                         10        20
                 ....*....|....*....|....*....
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGK 31
Cdd:PRK00725  18 ALILAGGRGSRLKELTDKRAKPAVYFGGK 46
ADP_Glucose_PP cd02508
ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; ...
3-55 4.12e-03

ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.


Pssm-ID: 133002 [Multi-domain]  Cd Length: 200  Bit Score: 37.14  E-value: 4.12e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGK-PMIETQIECLLEKGIKDIKVAVGY 55
Cdd:cd02508    1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRyRLIDFPLSNMVNSGIRNVGVLTQY 54
glgC PRK00844
glucose-1-phosphate adenylyltransferase; Provisional
3-31 4.55e-03

glucose-1-phosphate adenylyltransferase; Provisional


Pssm-ID: 234846 [Multi-domain]  Cd Length: 407  Bit Score: 37.88  E-value: 4.55e-03
                         10        20
                 ....*....|....*....|....*....
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGK 31
Cdd:PRK00844   8 AIVLAGGEGKRLMPLTADRAKPAVPFGGS 36
IspD pfam01128
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Members of this family are enzymes ...
3-53 5.25e-03

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Members of this family are enzymes which catalyze the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from cytidine triphosphate and 2-C-methyl-D-erythritol 4-phosphate (MEP).


Pssm-ID: 460075  Cd Length: 219  Bit Score: 37.04  E-value: 5.25e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 500187316    3 AIILAAGLGTRLKpltSECPKPLVKVNGKPMIETQIECLLEKG-IKDIKVAV 53
Cdd:pfam01128   1 AVIPAAGSGKRMG---AGVPKQFLQLLGQPLLEHTVDAFLASPvVDRIVVAV 49
mobA PRK00317
molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
1-49 8.92e-03

molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed


Pssm-ID: 234725 [Multi-domain]  Cd Length: 193  Bit Score: 35.93  E-value: 8.92e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 500187316   1 MKAIILAAGLGTRLKPLtsecPKPLVKVNGKPMIETQIEcLLEKGIKDI 49
Cdd:PRK00317   4 ITGVILAGGRSRRMGGV----DKGLQELNGKPLIQHVIE-RLAPQVDEI 47
glgC PRK02862
glucose-1-phosphate adenylyltransferase; Provisional
3-31 9.41e-03

glucose-1-phosphate adenylyltransferase; Provisional


Pssm-ID: 179486 [Multi-domain]  Cd Length: 429  Bit Score: 36.79  E-value: 9.41e-03
                         10        20
                 ....*....|....*....|....*....
gi 500187316   3 AIILAAGLGTRLKPLTSECPKPLVKVNGK 31
Cdd:PRK02862   6 AIILGGGAGTRLYPLTKLRAKPAVPLAGK 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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