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Conserved domains on  [gi|500209677|ref|WP_011879870|]
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MULTISPECIES: PRC-barrel domain-containing protein [Burkholderia]

Protein Classification

PRC-barrel domain-containing protein( domain architecture ID 10004821)

PRC-barrel domain-containing protein similar to Methanocaldococcus jannaschii protein MJ1118 and protein MJ0916

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 29-85 5.38e-18

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


:

Pssm-ID: 441477  Cd Length: 70  Bit Score: 73.32  E-value: 5.38e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500209677  29 ADTLEGNKVYTTDGDDVGKIKDIMLDVRSGRVAYAVLSSG----GLLGIGDKLLAIPWSAL 85
Cdd:COG1873    1 ASELIGKEVITSDGERLGKVKDVEIDLETGKIEALVVPPGnkffGFLGDGEKEVVIPWEAV 61
 
Name Accession Description Interval E-value
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 29-85 5.38e-18

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 73.32  E-value: 5.38e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500209677  29 ADTLEGNKVYTTDGDDVGKIKDIMLDVRSGRVAYAVLSSG----GLLGIGDKLLAIPWSAL 85
Cdd:COG1873    1 ASELIGKEVITSDGERLGKVKDVEIDLETGKIEALVVPPGnkffGFLGDGEKEVVIPWEAV 61
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 24-103 5.33e-17

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 70.78  E-value: 5.33e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500209677   24 PDVMAADTLEGNKVYTTDGDDVGKIKDIMLDVRSGRVAYAVLSSGGLLgiGDKLLAIPWSALTLDTERKCFLLSVSSERI 103
Cdd:pfam05239   1 EDEFYASDLIGLEVYTEDGEKLGKVKDVVIDEGEGRVRYLVVSVGGFL--GGKEVLIPFDKLNVKLGKDRIIVDPPKELL 78
 
Name Accession Description Interval E-value
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 29-85 5.38e-18

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 73.32  E-value: 5.38e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500209677  29 ADTLEGNKVYTTDGDDVGKIKDIMLDVRSGRVAYAVLSSG----GLLGIGDKLLAIPWSAL 85
Cdd:COG1873    1 ASELIGKEVITSDGERLGKVKDVEIDLETGKIEALVVPPGnkffGFLGDGEKEVVIPWEAV 61
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 24-103 5.33e-17

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 70.78  E-value: 5.33e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500209677   24 PDVMAADTLEGNKVYTTDGDDVGKIKDIMLDVRSGRVAYAVLSSGGLLgiGDKLLAIPWSALTLDTERKCFLLSVSSERI 103
Cdd:pfam05239   1 EDEFYASDLIGLEVYTEDGEKLGKVKDVVIDEGEGRVRYLVVSVGGFL--GGKEVLIPFDKLNVKLGKDRIIVDPPKELL 78
YrrD COG3881
Uncharacterized conserved protein YrrD, contains PRC-barrel domain [Function unknown];
30-84 7.51e-07

Uncharacterized conserved protein YrrD, contains PRC-barrel domain [Function unknown];


Pssm-ID: 443089 [Multi-domain]  Cd Length: 161  Bit Score: 46.42  E-value: 7.51e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 500209677  30 DTLEGNKVYTTDGDDVGKIKDIMLDVRSGRVAYAVLSSGGLLGIGDKLLAIPWSA 84
Cdd:COG3881   91 IDLIGKKVITEKGELLGTVEDVYFDEETGKIVGYEISDGLLADLLKGRKILPAEQ 145
YrrD COG3881
Uncharacterized conserved protein YrrD, contains PRC-barrel domain [Function unknown];
32-85 2.27e-03

Uncharacterized conserved protein YrrD, contains PRC-barrel domain [Function unknown];


Pssm-ID: 443089 [Multi-domain]  Cd Length: 161  Bit Score: 36.40  E-value: 2.27e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 500209677  32 LEGNKVYTT-DGDDVGKIKDIMLDVRSGRVAYAVLSSGGLLGigdKLLAIPWSAL 85
Cdd:COG3881    7 LIGLPVISLeTGKQLGRVKDLVFDPEEGRVAGFLVESGGLFK---GAKVIPFEDV 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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