|
Name |
Accession |
Description |
Interval |
E-value |
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
15-177 |
2.17e-25 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 96.60 E-value: 2.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVTNADAYILGMANNVAIDQHRRERRHLHDDDvET 93
Cdd:COG1595 19 FEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLwRKLDSFRGRGSFRAWLYRIARNLAIDHLRKRRRRRELLD-EL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 94 LLETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQE 173
Cdd:COG1595 98 AEELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVKSRLSRARKKLREALEE 177
|
....
gi 500212335 174 DGDS 177
Cdd:COG1595 178 EGAL 181
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
15-171 |
5.51e-18 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 76.62 E-value: 5.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVTNADAYILGMANNVAIDQHRRERRHlhDDDVET 93
Cdd:TIGR02937 3 FEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLlEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRL--RRELDL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500212335 94 LLETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRM 171
Cdd:TIGR02937 81 LEELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLRELL 158
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
23-173 |
1.92e-16 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 72.50 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 23 YAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRRER----RHLHDDDVETLLETP 98
Cdd:PRK12527 5 YRELVRFLSARLGNRQAAEDVAHDAYLRVLERSSSAQIEHPRAFLYRTALNLVVDRHRRHRvrqaEPLEVLDEEERLHSP 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 99 DeladPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQE 173
Cdd:PRK12527 85 S----PQTRLDLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRVRMRQ 155
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
117-167 |
4.46e-08 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 47.45 E-value: 4.46e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 500212335 117 LKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYC 167
Cdd:pfam08281 4 LLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| HTH_LUXR |
smart00421 |
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon |
121-165 |
8.74e-04 |
|
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
Pssm-ID: 197715 [Multi-domain] Cd Length: 58 Bit Score: 35.97 E-value: 8.74e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 500212335 121 LLGLPPRRRAIL-LAARvdGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:smart00421 1 LASLTPREREVLrLLAE--GLTNKEIAERLGISEKTVKTHLSNIMR 44
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
117-165 |
2.89e-03 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 34.77 E-value: 2.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 500212335 117 LKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:cd06171 4 LEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALK 52
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
15-177 |
2.17e-25 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 96.60 E-value: 2.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVTNADAYILGMANNVAIDQHRRERRHLHDDDvET 93
Cdd:COG1595 19 FEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLwRKLDSFRGRGSFRAWLYRIARNLAIDHLRKRRRRRELLD-EL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 94 LLETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQE 173
Cdd:COG1595 98 AEELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVKSRLSRARKKLREALEE 177
|
....
gi 500212335 174 DGDS 177
Cdd:COG1595 178 EGAL 181
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
15-171 |
5.51e-18 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 76.62 E-value: 5.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVTNADAYILGMANNVAIDQHRRERRHlhDDDVET 93
Cdd:TIGR02937 3 FEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLlEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRL--RRELDL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500212335 94 LLETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRM 171
Cdd:TIGR02937 81 LEELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLRELL 158
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
23-173 |
1.92e-16 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 72.50 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 23 YAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRRER----RHLHDDDVETLLETP 98
Cdd:PRK12527 5 YRELVRFLSARLGNRQAAEDVAHDAYLRVLERSSSAQIEHPRAFLYRTALNLVVDRHRRHRvrqaEPLEVLDEEERLHSP 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 99 DeladPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQE 173
Cdd:PRK12527 85 S----PQTRLDLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRVRMRQ 155
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
23-165 |
3.59e-14 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 66.43 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 23 YAYLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVTNADAYILGMANNVAIDQ-HRRERRHLHDDDVETLLETPDE 100
Cdd:TIGR02985 11 YPKLCAFARRYVKDEEDAEDIVQDVFLKLwENRETLEISESIKAYLFTIVKNRCLNYlRHKQVEEKYQEELAEIEERELS 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 101 LADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:TIGR02985 91 EADPEEELEAKELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITKALK 155
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
19-167 |
1.09e-12 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 62.78 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 19 LAARYAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRRERRHL-HDDDVETLLET 97
Cdd:PRK07037 4 FVDNRSMLVKIAARIVGCRSRAEDVVQDAFVKLVEAPNQDAVKQPVAYLFRIVRNLAIDHYRRQALENkYHGDEEDGLDV 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 98 PDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYC 167
Cdd:PRK07037 84 PSPEASPEAALINRDTLRHVADALSELPARTRYAFEMYRLHGETQKDIARELGVSPTLVNFMIRDALVHC 153
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
15-176 |
1.99e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 62.30 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLR-LENANVSTQVTNADAYILGMANNVAIDQHRRERRHLHDDDVET 93
Cdd:PRK11924 15 FSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRaWRKADLFNGKGSARTWLLTIARNVCYDLLRRRRREKAVLSDDA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 94 LL-ETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQ 172
Cdd:PRK11924 95 LEpEFAETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRRARQLLRECLE 174
|
....
gi 500212335 173 EDGD 176
Cdd:PRK11924 175 AQWE 178
|
|
| PRK12528 |
PRK12528 |
RNA polymerase sigma factor; Provisional |
18-167 |
2.97e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171561 [Multi-domain] Cd Length: 161 Bit Score: 59.09 E-value: 2.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 18 LLAARYAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRR---ERRHLhdddvETL 94
Cdd:PRK12528 9 LYSAHHHWLTGWLRRRLGCPQSAADLAQDTFVKVLVARETAQIIEPRAFLTTIAKRVLCNHYRRqdlERAYL-----EAL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500212335 95 LETPDELADPER----IVAARRKVDTLKDvllGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYC 167
Cdd:PRK12528 84 AQLPERVAPSEEeraiILETLVELDQLLD---GLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMRC 157
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
26-173 |
3.89e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 59.32 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 26 LVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNA-DAYILGMANNVAIDQHRRE--RRHLHDDDVETLLETPDELA 102
Cdd:PRK12513 39 LYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARfRTWLYQIARNLLIDHWRRHgaRQAPSLDADEQLHALADDGA 118
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500212335 103 DPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESElsaaMKYCLQRMQE 173
Cdd:PRK12513 119 APEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSR----LRYALQKLRE 185
|
|
| PRK12525 |
PRK12525 |
RNA polymerase sigma factor; Provisional |
23-173 |
2.24e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139037 [Multi-domain] Cd Length: 168 Bit Score: 56.88 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 23 YAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRR---ERRHLhdddvETLLETPD 99
Cdd:PRK12525 19 YDWLCKKLSRQLGCPHSAEDIASETFLQVLALPDPASIREPRALLTTIARRLMYEGWRRqdlERAYL-----QSLAEAPE 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500212335 100 ELA----DPERIVAARRKVDTLkdvLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQE 173
Cdd:PRK12525 94 AVQpspeEQWMVIETLLAIDRL---LDGLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRIHQYMVEAFKCCYQGFQE 168
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
23-152 |
1.56e-09 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 54.18 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 23 YAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQvTNADAYILGMANNVAIDQHRRERRHLHDDDVETLLETPDELA 102
Cdd:PRK09639 13 YPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRSDFKGI-ENEKGWLIKSARNVAYNYLRSEKRRRARILGEFQWQEVDNEP 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 500212335 103 DPERIVAARRKVDTLKDVLLGLPPRRRAILLaARVDGLLNREIAEQFGIS 152
Cdd:PRK09639 92 SPEEIWIRKEEITKVQEVLAKMTERDRTVLL-LRFSGYSYKEIAEALGIK 140
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
117-167 |
4.46e-08 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 47.45 E-value: 4.46e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 500212335 117 LKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYC 167
Cdd:pfam08281 4 LLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
26-160 |
1.35e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 48.78 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 26 LVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRRERRHlHDDDVETLLETPDELADPE 105
Cdd:PRK12541 18 LFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKY-KTTTIEEFHLPNVPSTEHE 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 106 RIVaaRRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESEL 160
Cdd:PRK12541 97 YFI--KHEIASWLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIEL 149
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
17-158 |
2.29e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 48.73 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 17 KLLAARYAYLVRRLE-RVTGSKDGATDALHETWLRLENANVSTQVTNA--DAYILGMANNVAIDQHRRERRHLHDDDVET 93
Cdd:PRK12524 29 RALTLRLAPRALAVAtRVLGDRAEAEDVTQEAMLRLWRIAPDWRQGEArvSTWLYRVVCNLCTDRLRRRRRASVDLDDAP 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 94 llETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVES 158
Cdd:PRK12524 109 --EPADAAPGAEEALIEGDRMRALDAALAALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVES 171
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
18-160 |
2.68e-07 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 48.26 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 18 LLAARYA-YLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVTNADAYILGMANNVAIDQHRRERRHLHDDDVET-- 93
Cdd:PRK09652 14 LLVRRYQpRVKRLLSRLTRDPADAEDLVQETFIKAyRALHSFRGGAAFYTWLYRIARNTAINYLRKQGRRPPASDVDAee 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500212335 94 -----LLETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESEL 160
Cdd:PRK09652 94 aedfdLADALRDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRI 165
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
40-174 |
4.33e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 47.62 E-value: 4.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 40 ATDALHETWLRLENANVSTQ---VTNADAYILGMANNVAIDQHRRERrhLHDDDVETLLETPDEL-ADPER---IVAARR 112
Cdd:PRK12529 42 ADDLAHDIFLRILASRDGGQreaIRQPRAYLARIANCVLVSWRRRQS--LELAWLEALATLPEPLhPSPEQqsvILETLH 119
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500212335 113 KVDTLKDVLlglPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCLQRMQED 174
Cdd:PRK12529 120 EIDALLDTL---RPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVTCLSLMPDD 178
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
15-168 |
1.00e-06 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 46.73 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRRERrhLHDDDVETL 94
Cdd:PRK09651 12 FESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNA--LEKAYLEML 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 95 LETPDELADPERIVAARRKVDTLKDVLL-GLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYCL 168
Cdd:PRK09651 90 ALMPEGGAPSPEERESQLETLQLLDSMLdGLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKATEHCL 164
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
32-170 |
7.11e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 44.43 E-value: 7.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 32 RVTGSKDGATDALHETWLRLENANVSTQVT--NADAYILGMANNVAIDQHRRERRHlhDDDVETLLETPDELADPERIVA 109
Cdd:PRK12514 38 RVLKDRSEAEEALQDVYVKIWTKADRFAVSglSPMTWLITIARNHAIDRLRARKAV--AVDIDEAHDLADPSPGPEAEVI 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500212335 110 ARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAA---MKYCLQR 170
Cdd:PRK12514 116 AGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSllkLRECLSR 179
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
15-165 |
1.33e-05 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 43.53 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHET-------WLRLENANvstqvtNADAYILGMANNVAIDQHRRERRHLH 87
Cdd:TIGR02983 8 FTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEAlvrtyvrWDRIRDPD------APDAYVRRVLVNLARSRWRRRRLLEL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500212335 88 DDDVETLLETPDELADPErivaarrKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:TIGR02983 82 PTRELPDAAAPDPAPDVA-------LRAALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALA 152
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
15-165 |
1.44e-05 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 43.53 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 15 LRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRL-ENANVSTQVT-NADAYILGMANNVAIDQHR--RERRHLHDDD 90
Cdd:PRK09645 11 MRALYDEHAAPLWRYALRLTGDRARAEDVVQETLLRAwQHPEVLADTGrSARAWLFTVARNLVIDERRsaRARPVEGGDD 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500212335 91 VETLLEtPDELADPERIVAARrkvdTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:PRK09645 91 VLGVPE-QSAPDEVDRALDRL----LVADALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYALR 160
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
16-163 |
1.52e-05 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 43.49 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 16 RKLLAARYAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNA--DAYILGMANNVAIDQHRRERRHlhddDVET 93
Cdd:PRK05602 23 RVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRPGEArfDTWLHRVVLNLCYDRLRRRREV----PVED 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 94 LLETPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAA 163
Cdd:PRK05602 99 APDVPDPAPGPDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDISVDALESLLARG 168
|
|
| PRK12523 |
PRK12523 |
RNA polymerase sigma factor; Reviewed |
25-167 |
1.50e-04 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 183572 [Multi-domain] Cd Length: 172 Bit Score: 40.60 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 25 YLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRR---ERRHLhdddVETLLETPDEL 101
Cdd:PRK12523 22 WLLAWLRRNVACRQRAEDLSQDTFVRLLGRPELPTPREPRAFLAAVAKGLMFDHFRRaalEQAYL----AELALVPEAEQ 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 500212335 102 ADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMKYC 167
Cdd:PRK12523 98 PSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYNRLDGMGHAEIAERLGVSVSRVRQYLAQGLRQC 163
|
|
| FixJ |
COG4566 |
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal ... |
90-157 |
2.02e-04 |
|
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal transduction mechanisms, Transcription];
Pssm-ID: 443623 [Multi-domain] Cd Length: 196 Bit Score: 40.47 E-value: 2.02e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 500212335 90 DVETLLETPDE-LADPERIVAARRKVDTLKDVLLGLPPRRRAILLAArVDGLLNREIAEQFGISLRLVE 157
Cdd:COG4566 103 DDQALLDAVRRaLARDRARRAERARRAELRARLASLTPREREVLDLV-VAGLSNKQIARELGISPRTVE 170
|
|
| Sigma70_ECF |
pfam07638 |
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the ... |
78-171 |
3.37e-04 |
|
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Pssm-ID: 254323 [Multi-domain] Cd Length: 185 Bit Score: 39.71 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 78 QHRRER-----RHLHDDDVETLLETPDELadperivaaRRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGIS 152
Cdd:pfam07638 94 RQRQKRggdvqRRELDEVVDNGDSPNPDL---------LLDLDEALEQLFSLSPRQARLVELRFFAGLSNDEIAERLGVS 164
|
90
....*....|....*....
gi 500212335 153 LRLVESELSAAMKYCLQRM 171
Cdd:pfam07638 165 ERTVERNWALARAWLHREL 183
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
19-177 |
5.46e-04 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 39.00 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 19 LAARYAYLVRRLE-RVTGSKDGATDALHETWLRLENANVSTQVTNADAYILGMANNVAIDQHRRERRHLHD---DDVETL 94
Cdd:PRK09647 33 LVRQHADRVYRLAyRLSGNQHDAEDLTQETFIRVFRSLQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEalpEDYDRV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 95 letPDELADPERIVAARRKVDTLKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESEL----SAAMKYCLQR 170
Cdd:PRK09647 113 ---PGDEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIhrgrQQLRAALAAH 189
|
....*..
gi 500212335 171 MQEDGDS 177
Cdd:PRK09647 190 APHAECA 196
|
|
| HTH_LUXR |
smart00421 |
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon |
121-165 |
8.74e-04 |
|
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
Pssm-ID: 197715 [Multi-domain] Cd Length: 58 Bit Score: 35.97 E-value: 8.74e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 500212335 121 LLGLPPRRRAIL-LAARvdGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:smart00421 1 LASLTPREREVLrLLAE--GLTNKEIAERLGISEKTVKTHLSNIMR 44
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
32-82 |
8.93e-04 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 38.75 E-value: 8.93e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 500212335 32 RVTGSKDGATDALHETWLRLENANvSTQVTNADAYILGMANNVAIDQ-----HRRE 82
Cdd:PRK09636 23 RMLGSVADAEDIVQEAWLRWNNAD-RAQIRDPRAWLTRVVTRLCLDRlrsarHRRE 77
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
12-168 |
2.34e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 37.06 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 12 RGGLRKLLAARYAYLVRRLERVTGSKDGATDALHETWLRLENANVSTQVTNADA--YILGMANNVAIDQHRRERRHLH-D 88
Cdd:PRK12537 22 RRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFDPARGSArgWIYSVTRHLALNVLRDTRREVVlD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 89 DDVETLLETPDELADPERIVAARRKVDtlkDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELS---AAMK 165
Cdd:PRK12537 102 DDAEETAQTLHEIIDDFDLWANSGKIH---RCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKrslKALR 178
|
...
gi 500212335 166 YCL 168
Cdd:PRK12537 179 ECM 181
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
117-165 |
2.89e-03 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 34.77 E-value: 2.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 500212335 117 LKDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:cd06171 4 LEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALK 52
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
22-158 |
4.39e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 36.58 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 22 RYAYLVRRLE-RVTGSKDGATDALHETWLRLE-NANVSTQVTNADAYILGMANNVAIDQHRRERRHL-------HDDDVE 92
Cdd:PRK12519 37 RHAGLVYGLAlKILGNSQEAEDLTQEIFLSLWrKSSYDPKRGSLSSYLLTLTRSRAIDRLRSRRSRQrllerwqQELLGE 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500212335 93 TLLETPDE-LADPERIVAARrkvdtlkDVLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVES 158
Cdd:PRK12519 117 ASEDTPLEqASLAERSQRVQ-------TALAQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKA 176
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
40-165 |
7.18e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 35.80 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 40 ATDALHETWLRLENA-----NVSTQvtNADAYILGMANNVAIDQHRRERRH---LHDDDVETLLETPDELADPERIVAAR 111
Cdd:PRK12542 36 AEDAVQETFITLYKNleklhSLNTQ--ELKRYILRVAKNKAIDSYRKNKRHetfLEEYERESIEAVDENIEEWEKRKMSE 113
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 500212335 112 RKVDTLkdvLLGLPPRRRAILLAARVDGLLNREIAEQFGISLRLVESELSAAMK 165
Cdd:PRK12542 114 VQIDTL---LKELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARK 164
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
64-158 |
8.97e-03 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 35.35 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 64 DAYILGMANNVAIDQHRRERRhlhdddvETLLEtPDELA-DPERIVAARRKV-DTLKDVLLGLPPRRRAILLAARVDGLL 141
Cdd:PRK09637 53 KSWLYQIANNTIIDFYRKKNR-------SEELP-DDLLFeDEEREENAKKELaPCLRPFIDALPEKYAEALRLTELEGLS 124
|
90
....*....|....*..
gi 500212335 142 NREIAEQFGISLRLVES 158
Cdd:PRK09637 125 QKEIAEKLGLSLSGAKS 141
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
19-84 |
9.00e-03 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 33.72 E-value: 9.00e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500212335 19 LAARYAYLVRRL-ERVTGSKDGATDALHETWLRLENA---NVSTQVTNADAYILGMANNVAIDQHRRERR 84
Cdd:pfam04542 1 LVERYLPLVYSLaRRYLGDGADAEDLVQEGFLGLWRAierFDPERGVSFSTWLYTIIRNAIIDYLRKQRR 70
|
|
|