|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
27-372 |
1.04e-124 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 363.02 E-value: 1.04e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKT------IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06333 1 KIGAILSLTGPAASLGIPERNAVELLVEQinaaggINGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTGES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVEPQegaRTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF 180
Cdd:cd06333 81 LAVAPIAEEAKVPLISLAGAAAIVEPV---RKWVFKTPQSDSLVAEAILDYMKKKGIKKVALLGDSDAYGQSGRAALKKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 181 AEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKDV 260
Cdd:cd06333 158 APEYGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKGPIYQSHGAANQDFIKLAGKAA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 261 EGTLFPTQPVVVARTLPADDPARKAALAFVDAYEARYGAGtVTQFAGDAagvyprlADAVGRALKAAQPGTPAFRTALRR 340
Cdd:cd06333 238 EGVILPAGKLLVADQLPDSDPQKKVLLEFVKAYEAKYGEG-PSTFAGHA-------YDALLLLVEAIEPAGGTDRAALRD 309
|
330 340 350
....*....|....*....|....*....|..
gi 500215596 341 ELERAHELVVPNGVVNTSDKDHVGLDQRASVM 372
Cdd:cd06333 310 ALENTKGLVGVTGVYNFSPTDHNGLDPDSLVM 341
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
25-384 |
2.81e-43 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 152.78 E-value: 2.81e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 25 DLKVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITP 98
Cdd:COG0683 3 PIKIGVLLPLTGPYAALGQPIKNGAELAVEEInaaggvLGRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLSSG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 99 AALAALDAVAASQTPMITLVGSGAIVEPQEGARtWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEF 177
Cdd:COG0683 83 VALAVAPVAEEAGVPLISPSATAPALTGPECSP-YVFRTAPSDAQQAEALADYLAKKlGAKKVALLYDDYAYGQGLAAAF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 178 TRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQthgiatpefirlgg 257
Cdd:COG0683 162 KAALKAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGPLNK-------------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 258 kdvegtlfptqpvvvartlpaddparkaalAFVDAYEARYGAGTVTQFAGDAAGVYprladAVGRALKAAQPGTPAfrtA 337
Cdd:COG0683 228 ------------------------------AFVKAYKAKYGREPSSYAAAGYDAAL-----LLAEAIEKAGSTDRE---A 269
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 500215596 338 LRRELErAHELVVPNGVVNTsDKDHVGLdQRASVMGIVKQGRFVYLS 384
Cdd:COG0683 270 VRDALE-GLKFDGVTGPITF-DPDGQGV-QPVYIVQVKADGKFVVVE 313
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-378 |
7.54e-37 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 136.58 E-value: 7.54e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILM----WPKT--IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELaveeINAAggILGRKIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTNSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSG-AIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIgfADS--YGDSWLNEF 177
Cdd:cd06335 81 LATIPILQEAKIPLIIPVATGtAITKPPAKPRNYIFRVAASDTLQADFLVDYAVKKGFKKIAIL--HDTtgYGQGGLKDV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 178 TRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGG 257
Cdd:cd06335 159 EAALKKRGITPVATESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLGWKVPLVGSWGLSMPNFIELAG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 258 KDVEGTLFPtQPVVVARTLPaddparkAALAFVDAYEARYGAGTVTQFAGDAAGvYprlaDAVGRALKAAQPGTPAFRTA 337
Cdd:cd06335 239 PLAEGTIMT-QTFIEDYLTP-------RAKKFIDAYKKKYGTDRIPSPVSAAQG-Y----DAVYLLAAAIKQAGSTDGKK 305
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 500215596 338 LRRELErahELVVPNGVVNTSDK-----DHVGLDQRASVMGIVKQG 378
Cdd:cd06335 306 IRAALE---NLKGYVGGVKTYNKpfsktDHEALDVSMVVLGYWKDG 348
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
27-309 |
3.26e-34 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 128.21 E-value: 3.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEInaaggiNGRKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVEPQEGArtWAFKMAQSDSAMADVMTRYMANHG-VKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTAPELTEGGGP--YVFRTVPSDAMQAAALADYLAKKLkGKKVAILYDDYDYGKSLADAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKD 259
Cdd:cd06268 159 ALKALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPELLKLGGEA 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 500215596 260 VEGTLFPTQpvvvartlPADDPARKAALAFVDAYEARYGaGTVTQFAGDA 309
Cdd:cd06268 239 AEGVVVAVP--------WHPDSPDPPKQAFVKAYKKKYG-GPPSWRAATA 279
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-362 |
9.15e-33 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 125.41 E-value: 9.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19980 1 KIGVIAPLSGPVAALGQQVLNGAKLAVEEInakggvLGRKLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWCSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVepQEGARTWAFKMAQSDSAMADVMTRYMANHG-VKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd19980 81 LAVMPVAERAKVPLVVEISSAPKI--TEGGNPYVFRLNPTNSMLAKAFAKYLADKGkPKKVAFLAENDDYGRGAAEAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKD 259
Cdd:cd19980 159 ALKAKGVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTGGTTSPDLIKLAGDA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 260 VEG--TLFPTQPVvvartlpADDPARKaalAFVDAYEARYGAGTVTQFAGDAAGVYpRLADAVGRAlkaaqpGTPAfRTA 337
Cdd:cd19980 239 AEGvyGASIYAPT-------ADNPANK---AFVAAYKKKYGEPPDKFAALGYDAVM-VIAEAIKKA------GSTD-PEK 300
|
330 340
....*....|....*....|....*
gi 500215596 338 LRRELERAHELVVPNGVVnTSDKDH 362
Cdd:cd19980 301 IRAAALKKVDYKGPGGTI-KFDEKG 324
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
26-379 |
8.97e-32 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 122.77 E-value: 8.97e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 26 LKVGVDLSSTGPAAAIGITSKNAILMWPK------TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPA 99
Cdd:pfam13458 2 IKIGVLTPLSGPYASSGKSSRAGARAAIEeinaagGVNGRKIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGVSSAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 100 ALAALDAVAASQTPMITLVGSgaivePQEGARTWAFKMAQSDSAMADVMTRYMA-NHGVKTVGFIGFADSYGDSWLNEFT 178
Cdd:pfam13458 82 ALAVAEVLAKKGVPVIGPAAL-----TGEKCSPYVFSLGPTYSAQATALGRYLAkELGGKKVALIGADYAFGRALAAAAK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQ--THGIATPEFIRLG 256
Cdd:pfam13458 157 AAAKAAGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDAKGIKlvGLGGDEPDLKALG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 257 GKDVEGTLFPTQPVvvartlpaDDPARKAALAFVDAYEARYGAGTVTQFagdAAGVYpRLADAVGRALKAAQPGTPAfrt 336
Cdd:pfam13458 237 GDAAEGVYATVPFF--------PDLDNPATRAFVAAFAAKYGEAPPTQF---AAGGY-IAADLLLAALEAAGSPTRE--- 301
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 500215596 337 ALRRELERAHeLVVPNGVVNTSDKDHVgLDQRASVMGIVKQGR 379
Cdd:pfam13458 302 AVIAALRALP-YDGPFGPVGFRAEDHQ-AVHCMYLVQVKADGK 342
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-343 |
5.58e-30 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 117.64 E-value: 5.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQPALNGAELAVDEInaaggiLGKKIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTSSIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVepqEGARTWAFKMAQSDSAMADVMTRYMANH-GVKTVG-FIGFADSYGDSWLNEFT 178
Cdd:cd06347 81 LAAAPIAQKAKIPMITPSATNPLV---TKGGDYIFRACFTDPFQGAALAKFAYEElGAKKAAvLYDVSSDYSKGLAKAFK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGK 258
Cdd:cd06347 158 EAFEKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPELLELGGD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 259 DVEGTLFPTQpvvvartlPADDPARKAALAFVDAYEARYGAgTVTQFAG---DAAGVyprLADAVGRALKaaqpgtpAFR 335
Cdd:cd06347 238 AVEGVYFTTH--------FSPDDPSPEVQEFVKAYKAKYGE-PPNAFAAlgyDAVML---LADAIKRAGS-------TDP 298
|
....*...
gi 500215596 336 TALRRELE 343
Cdd:cd06347 299 EAIRDALA 306
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-298 |
1.70e-29 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 115.84 E-value: 1.70e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLQGAELAVEEInaaggiLGIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSINSSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVepQEGARTWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd19988 81 LAAIRVALKAGVPQINPGSSAPTI--TESGNPWVFRCTPDDRQQAYALVDYAFEKlKVTKIAVLYVNDDYGRGGIDAFKD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKD 259
Cdd:cd19988 159 AAKKYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLKQPLFGSDGLVTPKFIELAGDA 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 500215596 260 VEGTLFPTQpvvvarTLPADDPARKaaLAFVDAYEARYG 298
Cdd:cd19988 239 AEGAIATTP------FLPDSDDPKV--SAFVEKYKKRYG 269
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-380 |
3.09e-29 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 116.13 E-value: 3.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKT------IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06343 8 KIGTSLPLSGPAAAYGKPVRAGAAAYFDEvnaaggINGRKIELIVEDDGYDPARAVAAVRKLVEQDKVFAIVGGLGTPTN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLV-GSGAIVEPqegARTWAFKMAQSDSAMADVMTRYMA-NHGVKTVGFIGFADSYGDSWLNEFT 178
Cdd:cd06343 88 LAVRPYLNEAGVPQLFPAtGASALSPP---PKPYTFGVQPSYEDEGRILADYIVeTLPAAKVAVLYQNDDFGKDGLEGLK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGK 258
Cdd:cd06343 165 EALKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGSSVSADPTTLAKAGG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 259 DVEGTLFPTQPVVVArtLPADDParkAALAFVDAYEARYGAGTVTQFAGDAAGVyprlADAVGRALKAAQPGtpafrtaL 338
Cdd:cd06343 245 DAAEGVYSASYLKDP--TDADDP---AVKEFREAYKKYFPDDPPNAYALYGYAA----AQVFVEALKRAGKD-------L 308
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 500215596 339 RRE-LERAHE------LVVPNGVVNTSDKDHVGLDQraSVMGIVKQGRF 380
Cdd:cd06343 309 TREgLIKALEslkdfdDGGPGPPVTFSPDDHRGIES--MYLVQVDGGKW 355
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-299 |
3.64e-28 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 113.10 E-value: 3.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK--------TIAGQP--VQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNI 96
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLELAADeinaaggiKVGGKKykVEVVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 97 TPAALAALDAVAASQTPMITLVGSGAIVEPqegARTWAFKMAQSDSAMADVMTRY-MANHGVKTVGFIGFADSYGDSWLN 175
Cdd:cd06336 81 SAIAAAVQPVTERNKVLLLTAAFSDPILGP---DNPLLFRIPPTPYEYAPPFIKWlKKNGPIKTVALIAPNDATGKDWAA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 176 EFTRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSgTPAVLPQ--RTLIERGYKGAIYQTHGIATPEFI 253
Cdd:cd06336 158 AFVAAWKAAGGEVVAEEFYDRGTTDFYPVLTKILALKPDALDLGGS-SPGPAGLiiKQARELGFKGPFVSEGGAKADEIL 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 500215596 254 RLGGKD-VEGTLFptqpVVVARTLPADDPARKaalAFVDAYEARYGA 299
Cdd:cd06336 237 KEVGGEaAEGFIG----VLPADDDPIASPGAK---AFVERYKKKYGE 276
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-298 |
1.17e-27 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 110.41 E-value: 1.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19986 1 KIGVVAPLTGPAALNGEYQKNGAQLALEEInaaggvLGRPLELVVEDDQGTNTGAVNAVNKLISDDKVVAVIGPHYSTQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVEPQEgarTWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd19986 81 LAVSPLVKEAKIPVITGGTSPKLTEQGN---PYMFRIRPSDSVSAKALAKYAVEElGAKKIAILYDNDDFGTGGADVVTA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKD 259
Cdd:cd19986 158 ALKALGLEPVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFATPTVLLLAGEA 237
|
250 260 270
....*....|....*....|....*....|....*....
gi 500215596 260 VEGTlfptqpVVVARTLPADDPARKAalAFVDAYEARYG 298
Cdd:cd19986 238 LEGI------YSVTDFVPSDPDPKVQ--AFVKKYKAKYG 268
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-355 |
1.21e-27 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 111.56 E-value: 1.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEInaaggvGGVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLSSEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGA-IVEpqegARTWAFKMA-QSDSAMADVMTRYMANHGVKTVG-FIGFADSYGDSWLNEF 177
Cdd:cd06348 81 FAADPIAQQAKVPVVGISNTAPgITD----IGPYIFRNSlPEDKVIPPTVKAAKKKYGIKKVAvLYDQDDAFTVSGTKVF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 178 TRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGG 257
Cdd:cd06348 157 PAALKKNGVEVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLKGPIVGGNGFNSPDLIKLAG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 258 KDVEGTLfptqpVVVARTLPADDPARKaalAFVDAYEARYGAgTVTQFAGDA-AGVYpRLADAVGRAlkaaqpGTPAFRT 336
Cdd:cd06348 237 KAAEGVI-----VGSAWSPDNPDPKNQ---AFVAAYKEKYGK-EPDQFAAQAyDAAY-ILAEAIKKA------GSTTDRA 300
|
330
....*....|....*....
gi 500215596 337 ALRRELERAHELVVPNGVV 355
Cdd:cd06348 301 DLRDALARILIAKDFEGPL 319
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-323 |
5.33e-26 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 106.90 E-value: 5.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI----------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNI 96
Cdd:cd06338 1 KIGASLSLTGPFAGEGKAQKRGYELWVEDVnaaggvkgggKKRPVELVYYDDQSDPATAVRLYEKLITEDKVDLLLGPYS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 97 TPAALAALDAVAASQTPMITlvGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHG--VKTVGFIGFADSYGDSWL 174
Cdd:cd06338 81 SGLTLAAAPVAEKYGIPMIA--GGAASDSIFERGYKYVFGVLPPASDYAKGLLDLLAELGpkPKTVAIVYEDDPFGKEVA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 175 NEFTRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYK-GAIYQTHGIATPEFI 253
Cdd:cd06338 159 EGAREAAKKAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNpKAFFLTVGPAFPAFR 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 254 RLGGKDVEGTLFPTQpvvVARTLPADDParKAALAFVDAYEARYGAGTVTQFAGDAAGVYpRLADAVGRA 323
Cdd:cd06338 239 EALGKDAEGVLGPSQ---WEPSLPYKVF--PGAKEFVKAYKEKFGEEPSYHAAAAYAAGQ-VLQQAIEKA 302
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
27-340 |
1.79e-25 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 105.30 E-value: 1.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILM----WPK--TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVvGPNITPAA 100
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELavdeINAkgGGLGFKIELVAQDDACDPAQAVAAAQKLVADGVVAVI-GHYNSGAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITlVGSGAIVEPQEGARTWaFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd06342 80 IAAAPIYAEAGIPMIS-PSATNPKLTEQGYKNF-FRVVGTDDQQGPAAADYAAKTlKAKRVAVIHDGTAYGKGLADAFKK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKD 259
Cdd:cd06342 158 ALKALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDFIKAAGDA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 260 VEGTLFpTQPVVVARTLPADDparkaalAFVDAYEARYGA--GTVTQFAGDAAGVyprLADAVGRALKaaqPGTPAFRTA 337
Cdd:cd06342 238 AEGVYA-TTPGAPPEKLPAAK-------AFLKAYKAKFGEppGAYAAYAYDAAQV---LLAAIEKAGS---TDRAAVAAA 303
|
...
gi 500215596 338 LRR 340
Cdd:cd06342 304 LRA 306
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-298 |
8.19e-25 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 102.68 E-value: 8.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILM----WPKT--IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELaveeINAAggINGKKIELIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVEpqeGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF 180
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPEIT---KAGDYIFRNYPSDAYQGKVLAEFAYNKLYKKVAILYENNDYGVGLKDVFKKE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 181 AEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKDV 260
Cdd:cd19984 158 FEELGGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFEDPELLEIAGEAA 237
|
250 260 270
....*....|....*....|....*....|....*...
gi 500215596 261 EGTLFPtqpvvvarTLPADDPARKAALAFVDAYEARYG 298
Cdd:cd19984 238 EGVIFT--------YPAFDDSSEKKQKFFFYRYKEKYG 267
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-380 |
2.94e-24 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 101.88 E-value: 2.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEInaaggvNGRKLELVVYDDQGDPKEAVNIAQKFVSDDKVVAVIGDFSSSCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVePQEGarTWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd06349 81 MAAAPIYEEAGLVQISPTASHPDF-TKGG--DYVFRNSPTQAVEAPFLADYAVKKlGAKKIAIIYLNTDWGVSAADAFKK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKD 259
Cdd:cd06349 158 AAKALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFGSSSLYSPEFIELAGDA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 260 VEGTLFPTQPVvvartLPADDPARKaalAFVDAYEARYGAgTVTQFagdAAGVYprlaDAVGRALKAAQPGTPAfRTALR 339
Cdd:cd06349 238 AEGVYLSSPFF-----PESPDPEVK---EFVKAYKAKYGE-DPDDF---AARAY----DAVNILAEAIEKAGTD-REAIR 300
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 500215596 340 RELErahELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRF 380
Cdd:cd06349 301 DALA---NIKDFSGLTGTITFDENGDVLKSLTILVVKDGKF 338
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-345 |
8.74e-22 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 95.32 E-value: 8.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILM---------WPKTIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNIT 97
Cdd:cd06340 1 KIGVLYPLSGPLALIGQEAKRGAELavdeinaagGIKSLGGAKIELVVADTQSDPEVAASEAERLITQEGVVAIIGAYSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 98 PAALAALDAVAASQTPMITLVGSGAIVEpqEGARTWAFKMAQSDSAMADVMTRYM------ANHGVKTVGFIGFADSYGD 171
Cdd:cd06340 81 SVTLAASQVAERYGVPFVTASAVADEIT--ERGFKYVFRTAPTASQFAEDAVDFLkelakkKGKKIKKVAIIYEDSAFGT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 172 SWLNEFTRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGY--KGAIYQTHGIAT 249
Cdd:cd06340 159 SVAKGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFkpKAIIGVGGGYSD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 250 PEFIRLGGKDVEGtlfptqpvVVARTLPADDPARKAALA--FVDAYEARYGAGTVTQFAGDAAGVYPrLADAVGRALKaa 327
Cdd:cd06340 239 PEFLKALGKDAEG--------VFSVVPWSPDLAKKKPGAkeVNERYKKKYGEDMTGHAARAYTAAWV-LADALERAGS-- 307
|
330
....*....|....*...
gi 500215596 328 qpgtpAFRTALRRELERA 345
Cdd:cd06340 308 -----TDPEAIRAAAALT 320
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
26-366 |
2.47e-20 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 90.68 E-value: 2.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 26 LKVGVDLSSTGPAAAIGITSKNAILMWPKT------IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPA 99
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQvnaaggINGRKIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYVGTAN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 100 ALAALDAVAASQTPMI-TLVGSGAIVEPqegARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFT 178
Cdd:cd06326 81 VEAVLPLLEEAGVPLVgPLTGADSLREP---GNPYVFHVRASYADEVEKIVRHLATLGLKRIAVVYQDDPFGKEGLAAAE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGK 258
Cdd:cd06326 158 AALAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGGAAQFYGLSVVGAAALAKALGD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 259 DVEGtlfptqpVVVARTLPadDPaRKAALAFVDAYEA---RYGAGTVTQFAGD---AAGVyprLADAVGRAlkaaqpGTP 332
Cdd:cd06326 238 AARG-------VVVSQVVP--NP-WSTTLPLVREYQAamkAAGPKEPSYASLEgyiAARV---LVEALRRA------GRN 298
|
330 340 350
....*....|....*....|....*....|....
gi 500215596 333 AFRTALRRELERAHELVVPNGVVNTSDKDHVGLD 366
Cdd:cd06326 299 PTRESLVAALESLGRLDLGGFTVDFSPGNHTGSR 332
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-309 |
1.70e-17 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 82.23 E-value: 1.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEInaaggvLGKKVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAASSGVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITlVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF 180
Cdd:cd06346 81 LAVASVAVPNGVVQIS-PSSTSPALTTLEDKGYVFRTAPSDALQGVVLAQLAAERGFKKVAVIYVNNDYGQGLADAFKKA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 181 AEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGY-KGAIYQTHGIATPEFIR-LGGK 258
Cdd:cd06346 160 FEALGGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLdFTPWIGTDGLKSDDLVEaAGAE 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 500215596 259 DVEGTLFpTQPVvvartlPADDPARKaalAFVDAYEARYGAGTvTQFAGDA 309
Cdd:cd06346 240 ALEGMLG-TAPG------SPGSPAYE---AFAAAYKAEYGDDP-GPFAANA 279
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
27-298 |
6.46e-16 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 77.33 E-value: 6.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK------TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEqinaagGINGKKVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSYSGPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMItlvgSGAIVEPQ-EGARTWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEFT 178
Cdd:cd19981 81 RAAAPIFQEAKVPMV----SAYAVHPDiTKAGDYVFRVAFLGPVQGRAGAEYAVKDlGAKKVAILTIDNDFGKSLAAGFK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGK 258
Cdd:cd19981 157 EEAKKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGYDSPKFIEIAGS 236
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 500215596 259 DVEGTLFPTqpvvvarTLPADDPaRKAALAFVDAYEARYG 298
Cdd:cd19981 237 AAEGVIITT-------SLNRDSD-RPITQKFIKEYRKRYG 268
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
35-298 |
4.67e-14 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 72.23 E-value: 4.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 35 TGPAAAIGITSKNAILMWPKT------IAGQPVQLTVLDDASDPGAAVRNIRKLvDEDHVDVVVGPNITPAALAALDAVA 108
Cdd:cd19983 9 TGRYSDLGVQGRNGAQLAVEEinaaggINGRPVELIIRDDQQDPEAAKAADREL-IAGGVVAIIGHMTSAMTVAVLPVIN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 109 ASQTPMITLVGSGAIVepqEGARTWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIG--FADSYGDSWLNEFTRFAEIRK 185
Cdd:cd19983 88 EAKVLMISPTVSTPEL---SGKDDYFFRVTPTTRESAQALARYAYNRgGLRRVAVIYdlSNRAYSESWLDNFRSEFEALG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 186 IRVIATERFN-RTDASVTGQALKLIAAKPDAVL-IAGSGTPAVLPQRtLIERGYKGAIYQTHGIATPEFIRLGGKDVEGT 263
Cdd:cd19983 165 GRIVAEIPFSsGADVDFSDLARRLLASKPDGLLlVASAVDTAMLAQQ-IRKLGSKIPLFSSAWAATEELLELGGKAVEGM 243
|
250 260 270
....*....|....*....|....*....|....*
gi 500215596 264 LFPTqpvvvarTLPADDPaRKAALAFVDAYEARYG 298
Cdd:cd19983 244 LFSQ-------AYDRNSS-NPRYLAFKEAYEERFG 270
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-298 |
7.66e-14 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 71.54 E-value: 7.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMW------PKTIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMAleeinaAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYSSGIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLVGSGAIVEpQEGARtWAFKMAQSDSAMADVMTRY-MANHGVKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd19982 81 LPVAAVAERQKIPLLVPTAADDDIT-KPGYK-YVFRLNPPASIYAKALFDFfKELVKPKTIAILYENTAFGTSVAKAARR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIY--QTHGIATPEFIRLGG 257
Cdd:cd19982 159 FAKKRGIEVVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPKLFagGGAGFTIPEFLKQAG 238
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 500215596 258 KDVEgtlfptqpVVVARTLPADDPARKAALAFVDAYEARYG 298
Cdd:cd19982 239 PLAE--------YVVTATLWSPDVKYPGAKEFYEKYKAKYG 271
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
27-309 |
3.15e-13 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 69.61 E-value: 3.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK------TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEeinaagGILGRPVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITLV-GSGAIVEPQEGARTwaFKMAQSDSAMADVMTRYMANHGVKTVGFIGfAD-SYGDSWLNEFT 178
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVaADDELTGENCNRYT--FRVNTSDRMIARALAPWLAENGGKKWYIVY-ADyAWGQSSAEAFK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATER--FNRTD-ASVTGQalkLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAiYQTHGI---ATPEF 252
Cdd:cd19989 158 EAIEELGGEVVGTLFapLGTTDfSSYITQ---ISDSGADGLLLALAGSDAVNFLKQAGQFGLGKK-YKIVGGilsIEPLA 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 500215596 253 IRLGGKDVEGTLFPTQPVVVartlpADDPARKaalAFVDAYEARYGAgTVTQFAGDA 309
Cdd:cd19989 234 LPALGDAAEGVYGGVRYPPT-----LDTPANR---AFVEAYEKEYGE-APDNFAGEA 281
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
27-357 |
5.32e-13 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 69.51 E-value: 5.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEInaaggiLGRKIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMI-TLVGSGAIVEpqEGARTWAFKMAQSDSAMADVMTRYMA--NHGVKTVGFIGFADSYG-DSWlNE 176
Cdd:cd06330 81 LAVAPVAEELKVLFIaTDAATDRLTE--ENFNPYVFRTSPNTYMDAVAAALYAAkkPPDVKRWAGIGPDYEYGrDSW-AA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 177 FTrfAEIRKIRV---IATE---RFNRTDASVTGQALKliAAKPDAVLIAGSGTPAVlpqrTLIE----RGY--KGAIYQT 244
Cdd:cd06330 158 FK--AALKKLKPdveVVGElwpKLGATDYTAYITALL--AAKPDGVFSSLWGGDLV----TFVKqakpYGLfdKTKVVSG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 245 HGIATPEFIRLGGKDVEGTlfptqpVVVARTlPADDPARKAALAFVDAYEARYGAGTVTQFAGDAAGVYPRLA------- 317
Cdd:cd06330 230 LGGGSEVLQALGKEMPEGL------IGGGRY-PFGWPDTPLNKAFVEAYRAKYGEYPTYWAYEAYAAVMALKAaiekags 302
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 500215596 318 ---DAVGRALKAAQPGTPAFRTALRRElerAHELVVPNGVVNT 357
Cdd:cd06330 303 tdtDKVIAALEGLTFDTPGGKITIRAE---DHQAVQPVVVGTT 342
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
135-339 |
1.24e-12 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 68.02 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 135 FKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRFAEIRKIRVIATERFNRTDASVTGQALKL-IAAKP 213
Cdd:cd06344 111 FRNIPSDEDIARQLARYAARQGYKRIVIYYDDDSYGKGLANAFEEEARELGITIVDRRSYSSDEEDFRRLLSKWkALDFF 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 214 DAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKDVEGtlfptqpVVVARTLPADDPaRKAALAFVDAY 293
Cdd:cd06344 191 DAIFLAGSMPEGAEFIKQARELGIKVPIIGGDGLDSPELIEIAGKAAEG-------VVVATVFDPDDP-RPEVRAFVEAF 262
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 500215596 294 EARYGAgTVTQFAG---DAAGVyprLADAVGRAlKAAQPGTPAfrTALR 339
Cdd:cd06344 263 RKKYGR-EPDVWAAqgyDAVKL---LAEAIEKA-GSTVPAKIA--SALR 304
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-340 |
2.44e-11 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 64.25 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKT------IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNItpaa 100
Cdd:cd06341 1 KIGLIYPDTGPGAASFSAARAGAEARFGLanaaggINGRKVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGSSS---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 laaldAVAASQTPMIT----LVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYG-DSWLN 175
Cdd:cd06341 77 -----AASGSANDYLAqagiPVVGGAGVSVWCFRNMFSNFFSLGGGGSTTTYGQYAAALGGTKAAVVVTDIPAAsQQLAQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 176 EFTRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRL 255
Cdd:cd06341 152 QLAASLRAAGVEVVGTAPYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSGYDPSVLAA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 256 GGKDVEGTLFPTqpvvVARTLPADDPARKAALAFVdayeARYGAGTVTQFAGDAAGVYpRLADAVGRALKAAQPG--TPA 333
Cdd:cd06341 232 YGAALAGVSVAS----TFLPFEADTPAVKAYRAAM----AKYAPELQDPLQQFALSGY-IAADLFVRGLEAAGGCptRAA 302
|
....*..
gi 500215596 334 FRTALRR 340
Cdd:cd06341 303 FIKALRD 309
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
27-362 |
4.52e-11 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 63.39 E-value: 4.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTI------AGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAA 100
Cdd:cd06331 1 KIGLLTPLSGPASVYGRAIANGAELAVEEInaaggvLGRPVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPITSATR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMI-TLVGSGAIVEPqegartWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGfADsYgdSW---LNE 176
Cdd:cd06331 81 NAVAPVAERAKVPLLyPTFYEGGECSP------YLFCFGEVPNQQLDPLIPWLMEEYGKKFYLIG-SD-Y--VWprtMND 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 177 FTRFAEIRKIRVIATERFNRTDASVTGQAL-KLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYqthgIATPEF--- 252
Cdd:cd06331 151 AARRVIEAHGGEVVGEEYLPLGTTDFSSVIeKIKASGADVVLSTLVGADAVTFLKQFAAAGLRRKVR----IAALLFden 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 253 --IRLGGKDVEGTLfptqpVVVARTLPADDPARKaalAFVDAYEARYG--AGTVTQFAGDAAGVYPRLADAVGRALKAAq 328
Cdd:cd06331 227 tlAGLGAEAAEGIY-----SVLSYFQSLDTPENK---AFVAAYRKKFGedAPPITSLSEAAYEAVHLYAAAVEKAGSTD- 297
|
330 340 350
....*....|....*....|....*....|....
gi 500215596 329 pgtpafRTALRRELERAhELVVPNGVVnTSDKDH 362
Cdd:cd06331 298 ------PEAVIAALPGV-SFDGPQGPV-TMDPDN 323
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
26-265 |
4.60e-11 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 63.36 E-value: 4.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 26 LKVGVDLSSTGPAAAIGITSKNAILmwpkT----------IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPN 95
Cdd:cd19978 1 IRLGMSAALSGPAAELGNEMKRGIE----AafnevnaqggVNGRKIKLIALDDGYEPDRTVKNTKKLIEEDKVFALIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 96 ITPAALAALDAVAASQTPMITLVgSGAivepqEGARTWAFK-----MAqSDSAMADVMTRYMANHG-VKTVGFIGFADSY 169
Cdd:cd19978 77 GTPTALAALPLANEKKIPLFGPF-TGA-----EFLRTPFLPyvfnlRA-SYADETEALVDYLVKTLgPKRIAIFYQNDAF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 170 GDSWLNEFTRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVlpqrtliergykgaiyqthgiat 249
Cdd:cd19978 150 GLAGLEGAKKALKKRGLTPVAEGSYTRNTLDVEEALAKILKAKPEAIILVGTYAPAA----------------------- 206
|
250
....*....|....*.
gi 500215596 250 pEFIRLGGKDVEGTLF 265
Cdd:cd19978 207 -EFIRLARAAGLNPLF 221
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
27-339 |
6.59e-10 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 59.94 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQ----PVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALA 102
Cdd:cd20014 1 KIGLLLPYSGVYAALGEDIRNGFQLYLDEHGGKlggrPIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVSSGVALA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 103 ALDAVAASQTPMITLVGSGAIVEPQEGA----RTwAFKMAQSDSAMADvmtrYMANHGVKTVGFIGFADSYGDSWLNEFT 178
Cdd:cd20014 81 IRDVVEQAKVPLIVANAGANALTRAACSpyifRT-SFSNWQLGYALGK----YAAENVGKTVVTIASDYAAGREVVAGFK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 R-FAEI--RKIRVIATERFNRTDASVTGQALKliAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAI--YQTHGIATPEFI 253
Cdd:cd20014 156 EgFEAAggKVVGEIWTPLGTTTDFSPYLTQIA--ASGPDAVYAFFAGADAVRFVKQYAEFGLKGKIplYGPGFLTDEDVL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 254 RLGGKDVEGTLFptqpvvvarTLP-ADDPARKAALAFVDAYEARYG--AGTVTQFAGDAAGVyprLADAVGRALKAAQPG 330
Cdd:cd20014 234 PALGEAAEGIIT---------VLHyAPTLDNPANRAFVAAYQAKYGrlPDVYAVQGYDAAQV---IDAALEAVGGDTSDK 301
|
....*....
gi 500215596 331 TpAFRTALR 339
Cdd:cd20014 302 D-ILAAALE 309
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
31-298 |
1.12e-08 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 56.08 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 31 DLSSTGPAAAIGItsKNAILMWPKTIA------GQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALAAL 104
Cdd:cd19979 7 DLSGGSAASGEAI--KRGIQLAIDEINaaggllGRKLELVAKDHRGNPARGVDNLREFAADPDVLAVFGGLHSPVLLAEL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 105 DAVAASQTPMITLVGSGA-IVEPqEGARTWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRFAEI 183
Cdd:cd19979 85 DFIHELKIPYLVPWAAATpITRN-GYSPNYIFRLSVDDSLAGPFLVEYALKKGCKRPALLLENTGWGRSNLKAMTKALAK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 184 RKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIA---TPEFIRLGGKDV 260
Cdd:cd19979 164 KGLQPVGVEWFNWGDTDAKPQLRALKAAGADAILLVANAPEGAAIVKALAALPERLPIISHWGITggdFPELPREALSKI 243
|
250 260 270
....*....|....*....|....*....|....*...
gi 500215596 261 EGTLFPTQpvvvartLPADDPARKAALAFVDAYEARYG 298
Cdd:cd19979 244 DLRFIQTF-------SFFDANQSPRGKQVLARYKRRYP 274
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
56-323 |
1.35e-08 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 56.12 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 56 IAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAASQTP-MITLVGSGAIVEPQ----EGA 130
Cdd:cd06345 33 ILGRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFRSEVVLAAMEVAAEYKVPfIVTGAASPAITKKVkkdyEKY 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 131 RTWaFKMAQSDSAMADVMTRYMAN-----HGVKTVGFIGFADSYGDSWLNEFTRFAEIRKIRVIATERFNRTDASVTGQA 205
Cdd:cd06345 113 KYV-FRVGPNNSYLGATVAEFLKDllvekLGFKKVAILAEDAAWGRGIAEALKKLLPEAGLEVVGVERFPTGTTDFTPIL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 206 LKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHG-IATPEFIRLGGKDVEGTLFptqpvvvartlpADDPARK 284
Cdd:cd06345 192 SKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVGINVpAQDPEFWENTGGAGEYEIT------------LAFAAPK 259
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 500215596 285 AAL-----AFVDAYEARYG--AGTVTQFAGDAAGVyprLADAVGRA 323
Cdd:cd06345 260 AKVtpktkPFVDAYKKKYGeaPNYTAYTAYDAIYI---LAEAIERA 302
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
27-310 |
2.23e-08 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 55.34 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK----TIAGQPVQLTVLDDA-SDPGAAVRNIRKLVDEDHVDVVVGPNITPAAL 101
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDRGIDLYLKlhgdKVGGRKVEVIYRDDGgPNPAVAKRLAQELIVRDKVQILIGFGFTPNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 102 AALDAVAASQTPMITL-VGSGAIVEPQE-GARTwAFKMAQSDSAMADvmtrYMANHGVKTVgFIGFAD-SYGDSWLNEFT 178
Cdd:cd20013 81 AVAPVATEAKTPTVIMnAATSSITRKSPyFVRT-SFTMWQVAYPMGK----WAAKNGIKKA-YTAVADyAPGHDAETAFK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATER--FNRTDASVTGQALKliAAKPDAVLI-AGSGTPAVLPQRTLIERGYKGA---IYQTHGIATPEF 252
Cdd:cd20013 155 KAFEAAGGKIVGSIRvpLATPDFAPFMQRIK--DAKPDAVFVfVPAGAPSIGFLKAYAERGLKEAgikLLGTGDATDDDD 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 500215596 253 IRLGGKDVEGTlfptqpvVVARTLPADDPaRKAALAFVDAYEARYGAGTVTQFAGDAA 310
Cdd:cd20013 233 LPAMGDAALGL-------ITAGHYSAALD-SPENKAFVAAYQKAYGPDARPDFMAVAA 282
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
27-345 |
1.68e-07 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 52.64 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK----TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALA 102
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDGFNLALEqlggKLGGLPVEVVVEDDQLKPDVAKQAAERLIERDKVDFVTGIIFSNVMLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 103 ALDAVAASQTPmitLVGSGAIVEPQEGAR--TWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRF 180
Cdd:cd06359 81 VVKPVVDSKVF---YISANAGPSDLAGKGcnPNFFVTSWQNDQLHEAAGKYANDKGYKRVYLLAPNYQAGKDALAGFKRT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 181 AEIRKIRVIATeRFNRTDASVtgQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAI--YQTHGIATPEFIRLGGK 258
Cdd:cd06359 158 YKGEVVGEIYT-PLGQLDFSA--ELAQIRAAKPDAVFAFYPGGMGVNFVKQYAQAGLKKKIplYTVGTLDDEDLLPAMGD 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 259 DVEGTLfptqpVVVARTLPADDPARKaalAFVDAYEARYGaGTVTQFAG---DAAgvypRLADAvgrALKAAQpGTPAFR 335
Cdd:cd06359 235 AALGVL-----SVSQWSPDLDNPENK---RFVAAFRKKYG-RPPSNYAAqgyDAA----LLIDA---AVKAVG-GDLSDK 297
|
330
....*....|
gi 500215596 336 TALRRELERA 345
Cdd:cd06359 298 DALRAALRKA 307
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
35-312 |
1.92e-07 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 52.28 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 35 TGPAAAIGITSKNAILMWPKT------IAGQPVQLTVLDDASDPGAAvRNIRKLVDEDHVDVVVGPNITPAALAALDAVA 108
Cdd:cd19985 9 SGKSASKGKSMLRGAELYIDQinaaggINGKKVKLDVFDDQNDPDAA-RKAAQIIVSDKALAVIGHYYSSASIAAGKIYK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 109 ASQTPMITlvGSGAIVEPQEGaRTWAFKMAQSDSAMAdvmtRYMANH-----GVKTVGFIGFADSYGDSWLNEFTRFAEI 183
Cdd:cd19985 88 KAGIPAIT--PSATADAVTRD-NPWYFRVIFNDSLQG----RFLANYakkvlKKDKVSIIYEEDSYGKSLASVFEATARA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 184 RKIRVIATERFNRTDASVTGQ------ALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGG 257
Cdd:cd19985 161 LGLKVLKKWSFDTDSSQLDQNldqivdELKKAPDEPGVIFLATHADEGAKLIKKLRDAGLKAPIIGPDSLASESFAQGFA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 258 KDVEGTLFP---TQPVVVARTLpADDPARKAALAFVDAYEARYGA--GTVTQFAGDAAGV 312
Cdd:cd19985 241 EYPEEKEEPgyyTDGIYATSPF-IFDIANEKAQKFRDTYQKRYGEepSWIAAFAYDAAML 299
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
27-318 |
6.50e-07 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 50.73 E-value: 6.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQLTVLDDAsDPGAAVRNIRKLVDEDHVDVVvGPNITPAALAALDA 106
Cdd:cd06339 1 RIALLLPLSGPYAAAGQAIRDGIELALFDAGGSRPELRVYDTG-GPEGAAAAYQQAVAEGADLII-GPLLKSSVAALAAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 107 VAASQTPMITLVGSGAIVEPQegartWAFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFTRFAEIRKI 186
Cdd:cd06339 79 AQALGVPVLALNNDESATAGP-----GLFQFGLSPEDEARQAARYAVQQGLRRFAVLAPDNAYGQRVANAFREAWQALGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 187 RVIATERFNRTDASVTGQALKLIAA----------------------KPDAVLIAGSGTPAVLPQRTLierGYKGA---- 240
Cdd:cd06339 154 TVVAVESYDPDETDFSAAIRRLLGVdqsearirqlgellefeprrrqDFDAIFLPAGPEQARLIAPQL---AFYGAgdvp 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 241 IYQTHGIATPEFIRLGGKDVEGTLFPTQPvvvartlPADDPArkaalAFVDAYEARYGAGTVTQFA-G-DAAGVYPRLAD 318
Cdd:cd06339 231 LLGTSLWYSGKLNLLRDPDLNGAWFADPP-------WLLSPR-----AFPLRYRLAYGWPPPRLAAlGyDAYRLAARLAR 298
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
27-298 |
3.29e-06 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 48.36 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK----TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALA 102
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELALEevggEVAGRKVELVVEDDAGDPDTAVTKARKLVEQDKVDVLIGPLSGDEGLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 103 ALDAVAASQTPMITLVgSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANH-GVKTVGFIGFADSYGDSWLNEFTRFA 181
Cdd:cd06332 81 VAPYAKEPGVPFINPV-AGADDLTQRAKAPNFFRTSFTGSQWSAPLGDYAYKElGYKKVATIGSDYAFGYEQAAGFKRGF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 182 E------IRKIRV-IATERFnrtdASVTGQalklIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIAT--PEF 252
Cdd:cd06332 160 EaaggevVQEIWVpLGTTDF----SPYIAQ----IPSADDAVFAFLGGADAVRFLKQYREFGLKDKIPLIGGGTTvdESV 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 500215596 253 IRLGGKDVEGTLFPTQpvvVARTLpaDDPARKaalAFVDAYEARYG 298
Cdd:cd06332 232 LPAMGDAALGIISASH---YAEGL--DNPENK---KFVAAYKKKFG 269
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
27-333 |
3.44e-05 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 45.37 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAILMWPK-------TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPA 99
Cdd:cd06328 1 KIGVITSLTGPLAAYGKQTERGFELGLEyatdgtmEVDGRKIEVIVKDDQGDPDTAKAAATELIGDDGVDILVGTVSSAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 100 ALAALDAVAASQTPMI-TLVGSGAIVEPQEGARTwaFKMAQSDSAMADVMTRYMANHGVKTVGFIGFADSYGDSWLNEFT 178
Cdd:cd06328 81 ALALAPVAEQNKKILIvGPAAADSITGENWNKYT--FRTSRNSWQDAIAGAKALADPLGKSVAFLAQDYAFGQDGVAAFK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 179 RFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGK 258
Cdd:cd06328 159 KALEAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVLDDIKVVTGGPDIATLAALGD 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500215596 259 DVEGTLFPTqpvVVARTLPaDDPARKaalAFVDAYEARYGAgTVTQFAGDAAGVyprlADAVGRALKAAQPGTPA 333
Cdd:cd06328 239 ALPGIEGLT---YYYYGLP-KNPVND---WLVKAHKERYNA-PPDLFTAGGFAA----AQAVVRALEKAGGDTDV 301
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-364 |
5.56e-04 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 41.46 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAI---LMW---PKTIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNiTPAA 100
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPYAQGVrdyLNYvneEGGINGVKIELEECDTGYKVPRAVACYKRLKAQDGVVAILGWG-TGDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 101 LAALDAVAASQTPMITlvGSGAIVEPQEGART-WAFKMAQSDSAMADVMTRYMANH-----GVKTVGFIGFADSYGDSWL 174
Cdd:cd06334 80 EALAPRVAKDKIPYIS--ASYGRSLADDGKVFpYNFFVGATYSSQARALLKYIAQEwggklKGPKVAFVYHDSPFGREPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 175 NEFTRFAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIYQTHGIATPEFIR 254
Cdd:cd06334 158 PALKAYAKELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLKTKFIGNIWGGDEDLIK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 255 LGGKDVEGTLFptqpvVVARTLPADDPARKAALAFVDAYEARYGA---GTVTQFAGDAAGVYprLADAVGRALKAAQPGT 331
Cdd:cd06334 238 LAGDAAEGYVG-----VSPFAFGTDDPPGKEIVEEVAKKGKGDGPeevGTVYYNRGWATAML--AVEAIRRADKAGGGTG 310
|
330 340 350
....*....|....*....|....*....|....*.
gi 500215596 332 PafRTALRRELERAHELVVPnGV---VNTSDKDHVG 364
Cdd:cd06334 311 L--GNKLKAGLERLKDFDLG-GLappVTFTPTDHRG 343
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
27-299 |
3.17e-03 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 39.25 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIG----ITSKNAILMWPKTiAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALA 102
Cdd:cd20378 1 TLGGLVSMSGAFAAAGkladRGMRLAVEEYGGA-LGRPLKYITRDTEGKPGTGVRKVQEAIAQDGARFFIGGTLSSVALA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 103 ALDAVAASQTPMITLVGSGAIVEPQEGART--WAfkmAQSDSAMADVMTRYM-ANHGVKTVGFIGFADSYGDSWLNEFTR 179
Cdd:cd20378 80 VSEEAEKAGGVYITSGGADEITGSRCNRSTfrWS---VPTYGAIRQTVRPVIkAMPKAKRWYTITPQYVFGESLLKNAKE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 180 FAEIRKIRVIATERFNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKG--AIYQTHGIATPEFIRLGG 257
Cdd:cd20378 157 VLKEKGIEHVGNSYHSLGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAVSFGLKRkmKILVAWSSGLDQFQELGP 236
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 500215596 258 KDVEGTLFPTQpvvvaRTLPADDPARKaalAFVDAYEARYGA 299
Cdd:cd20378 237 DICEGVYFGAQ-----YWHDVDTPANK---ALVKVYQAKFKE 270
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
27-339 |
3.34e-03 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 39.20 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 27 KVGVDLSSTGPAAAIGITSKNAI-LMWPK---TIAGQPVQLTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALA 102
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFeLYFDEignQVAGRKIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGIVSSAVAYA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 103 ALDAVAASQTPMItLVGSGAIVEPQEGARTWAFKMAQSDSAMADVMTRYMANHGvktvgfigfadsygdswlneftrfaE 182
Cdd:cd06360 81 VRDYVVEQKIPLV-ISNAGAAPLTQELASPYIFRTSFSNGQYDAPFGQYAYEKL-------------------------G 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 183 IRKIRVIATER-FNRTDASVTGQALKLIAAKPDAVLIAGSGTPAVLPQRTLIERGYKGAIY-QTHGIATPEFIR----LG 256
Cdd:cd06360 135 YRRIAVMASDYaAGHEQAGAFARTFKQAGGKVVQEIYPPLGTADFAPYLARIQQDAADAVWaFFAGADAIRFVKqydeYG 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 257 GKDvEGTLFPTQPVVVARTLPAddpARKAAL------------------AFVDAYEARYGAG-TVTQFAGDAAGvypRLA 317
Cdd:cd06360 215 LKG-KLPLVGIGGLVDDAILPE---QGDAALgivsylhysaaldtpenkAFVQAYRKKYGRDpGLYAEGGYVAA---RAI 287
|
330 340
....*....|....*....|..
gi 500215596 318 DAVGRALKAAQPGTPAFRTALR 339
Cdd:cd06360 288 AEALEAVKGNVEDKEAFLEALR 309
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
133-362 |
9.98e-03 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 37.67 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 133 WAFKMAQSDSAMADVMTRYMANHGVKTVGFIGfAD-SYGD---SWLNEFtrfAEIRKIRVIATERF--NRTDASVTGQal 206
Cdd:cd06356 108 NTFCTGSTPEQQVSPLIEWAIKKYGKKVYIIA-ADyNFGQisaDWVKKY---AKKNGGEVVGEEFFplDVTDFGPTIQ-- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 207 KLIAAKPDAVLIAGSGTP--AVLPQRTLIERGYKGAIYQTHGIATPEFIRLGGKDVEGtlfptqpVVVARTLPA--DDPA 282
Cdd:cd06356 182 KIQAAKPDFVVSLLVGGNhiSFYRQWAAAGLKKKIPIVSTVFGAGNEHKVLSPPELEG-------MYVSYSYFEelDTPA 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500215596 283 RKAalaFVDAYEARYGA-GTVTQFAGDA-AGVYpRLADAVGRAlkaaqpGTpAFRTALRRELERAHELVVPNGVVNTSDK 360
Cdd:cd06356 255 NKA---FVAKWRAKYGDePYINQEAVGVyNAVY-LWAEAVEKA------GS-TEREAVIAALESGISFDGPSGTVTVDPK 323
|
..
gi 500215596 361 DH 362
Cdd:cd06356 324 SH 325
|
|
| |
