|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
8-366 |
1.41e-176 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 495.56 E-value: 1.41e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 8 PVGVLFSGSGSYAQPARQGFRGAMTAIAHINASR-RFPFNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSWSR 86
Cdd:cd06357 1 RVGLLFSQTGVTAIIEQSMLNGALLAIEEINAAGgVNGRPIEPVVYDPASDPDRYRELAERLLLEDGVRHIFGCYTSASR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 87 KEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDILHRSG 166
Cdd:cd06357 81 KAVLPVVERHNALLWYPTPYEGFEYSPNVIYTGAVPNQHLLPLARYLLAHFGKRVFLVGSNYVYPWESNRVARELIEASG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 167 GEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEAddrfrPEKCPIISCNLYEGEITGLG-H 245
Cdd:cd06357 161 GEVVGERYVPLGDTDFAEIIEEIKSLKPDVVFSTLVGDSIYAFYRAYAEAGLD-----PADMPIASLTTSEAEVAAIGaE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 246 AAAGHFTVSCYFRTLQSPENDSFLKTLAAL-DPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDTPLG 324
Cdd:cd06357 236 AAAGHYTSAPYFQSIDTPENRAFVEAYRARfGDDAVTSAVAEAAYFQVHLLARAIERAGSDDPEAIRAALYGQEFDAPQG 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 500690451 325 AISVDRWTNHVELPAHIGRARADGSFEIVKRSHEAIAPDPFL 366
Cdd:cd06357 316 PVRIDPDNNHTWLTPRIGRANADGQFDIVWESDEPVAPDPYL 357
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
7-366 |
6.04e-133 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 385.02 E-value: 6.04e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 7 FPVGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RRfpfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCT 81
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAggvlgRK----IEPVVVDPASDWPLFAEKARKLIDQDKVRVVFGCW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 82 TSWSRKEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDI 161
Cdd:pfam13433 77 TSASRKAVLPVFERHNGLLFYPVQYEGFESSRNIFYTGAAPNQQAIPAVDYLLSELGKRFFLVGSDYVYPRTTNRILRAY 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 162 LHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPEKCPIISCNLYEGEIT 241
Cdd:pfam13433 157 LKAKGGEVVGERYLPLGSSDWQSIVAKIKAAGPDVVFSTINGDSNVAFYRALRAAG-----ITAEDIPVMSFSVAEEELA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 242 GLG-HAAAGHFTVSCYFRTLQSPENDSFLKTLAALDP-GAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSV 319
Cdd:pfam13433 232 GMGpEPLVGHLAAWNYFQSLDTPENKAFVAAFKARYGdDRVTNDPMEAAYIGVHLWAQAVEKAGTDDPDAVRQAMLGQEF 311
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 500690451 320 DTPLGAISVDRWTNHVELPAHIGRARADGSFEIVKRSHEAIAPDPFL 366
Cdd:pfam13433 312 DAPQGPVKIDPENHHTWKPVRIGRIRADGQFDIVWETDGPVRPDPWS 358
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
9-356 |
2.67e-97 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 293.71 E-value: 2.67e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RRfpfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTS 83
Cdd:cd06355 2 VGILHSLSGTMAISERPLVDATLLAIDEINAAggllgRK----IEPVIEDGASDWPTFAEKAEKLITQDKVAVIFGCWTS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 84 WSRKEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDILH 163
Cdd:cd06355 78 ASRKAVLPVIEKYNGLLFYPVQYEGLEQSPNIVYTGATPNQQILPAIDWLLENLGKRFFLVGSDYVFPRTANKIIRDQLK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 164 RSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPEKCPIISCNLYEGEITGL 243
Cdd:cd06355 158 ALGGEVVGEEYVPLGGTDFDAIVAKIKAFKPDVIVNTLNGDSNIAFFKQLAAAG-----ITASDLPVLSFSVSEAELRAI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 244 GH-AAAGHFTVSCYFRTLQSPENDSFLKTL-AALDPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDT 321
Cdd:cd06355 233 GPeELAGHYAAWNYFQSLDTPENQAFVEAFkAKYGADRVTSDPMEAAYLGVYLWAQAVEKAGSFDPDAVRAALKGQSFEA 312
|
330 340 350
....*....|....*....|....*....|....*
gi 500690451 322 PLGAISVDRWTNHVELPAHIGRARADGSFEIVKRS 356
Cdd:cd06355 313 PGGTVTVDPENHHLWKPVRIGKVQADGQFDIVWSS 347
|
|
| urea_ABC_UrtA |
TIGR03407 |
urea ABC transporter, urea binding protein; Members of this protein family are ABC transporter ... |
9-366 |
1.99e-78 |
|
urea ABC transporter, urea binding protein; Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 132448 [Multi-domain] Cd Length: 359 Bit Score: 245.72 E-value: 1.99e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RRfpfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTS 83
Cdd:TIGR03407 3 VGILHSLSGTMAISETTLKDAELMAIEEINASggvlgKK----IEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 84 WSRKEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFG-SRAMLVGANYIWGWENNRIARDIL 162
Cdd:TIGR03407 79 ASRKAVLPVFEENNGLLFYPVQYEGEECSPNIFYTGAAPNQQIIPAVDYLLSKKGaKRFFLLGSDYVFPRTANKIIKAYL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 163 HRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPEKCPIISCNLYEGEITG 242
Cdd:TIGR03407 159 KSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQLKNAG-----ITAKDVPVVSFSVAEEEIRG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 243 LG-HAAAGHFTVSCYFRTLQSPENDSFLKTLAAL-DPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVD 320
Cdd:TIGR03407 234 IGpENLVGHLAAWNYFQSVDTPANKKFVKAFKAKyGDDRVTNDPMEAAYLGVYLWKAAVEKAGSFDVDAVRDAAIGIEFD 313
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 500690451 321 TPLGAISVDRWTNHVELPAHIGRARADGSFEIVKRSHEAIAPDPFL 366
Cdd:TIGR03407 314 APEGKVKVDGKNHHLTKTVRIGEIRADGQFDVVWESDGPVEPDPWS 359
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
9-342 |
1.46e-68 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 219.40 E-value: 1.46e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RRFPFNLQahhfDPAGEADRYASLCRQLIRERDVRHVVGCTTS 83
Cdd:cd06331 2 IGLLTPLSGPASVYGRAIANGAELAVEEINAAggvlgRPVELVVE----DDASDPATAVAAARRLIQQDKVDAIVGPITS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 84 WSRKEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDILH 163
Cdd:cd06331 78 ATRNAVAPVAERAKVPLLYPTFYEGGECSPYLFCFGEVPNQQLDPLIPWLMEEYGKKFYLIGSDYVWPRTMNDAARRVIE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 164 RSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRpEKCPIISCNLYEGEITGL 243
Cdd:cd06331 158 AHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVLSTLVGADAVTFLKQFAAAG-----LR-RKVRIAALLFDENTLAGL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 244 GH-AAAGHFTVSCYFRTLQSPENDSFLKTLAAL--DPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVD 320
Cdd:cd06331 232 GAeAAEGIYSVLSYFQSLDTPENKAFVAAYRKKfgEDAPPITSLSEAAYEAVHLYAAAVEKAGSTDPEAVIAALPGVSFD 311
|
330 340
....*....|....*....|..
gi 500690451 321 TPLGAISVDRWTNHVELPAHIG 342
Cdd:cd06331 312 GPQGPVTMDPDNHHVRLNLYIA 333
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
9-348 |
1.33e-50 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 172.84 E-value: 1.33e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINASRRF---PFNLQAHhfDPAGEADRYASLCRQLIRERDVRHVVGCTTSWS 85
Cdd:pfam13458 4 IGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGVngrKIELVVA--DDQGDPDVAAAAARRLVDQDGVDAIVGGVSSAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 86 RKEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFG-SRAMLVGANYIWGWENNRIARDILHR 164
Cdd:pfam13458 82 ALAVAEVLAKKGVPVIGPAALTGEKCSPYVFSLGPTYSAQATALGRYLAKELGgKKVALIGADYAFGRALAAAAKAAAKA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 165 SGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPEKCPIISCNLYEGEITGLG 244
Cdd:pfam13458 162 AGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAG-----LDAKGIKLVGLGGDEPDLKALG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 245 -HAAAGHFTVSCYFRTLQSPENDSFLKTLAALDPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDTPL 323
Cdd:pfam13458 237 gDAAEGVYATVPFFPDLDNPATRAFVAAFAAKYGEAPPTQFAAGGYIAADLLLAALEAAGSPTREAVIAALRALPYDGPF 316
|
330 340
....*....|....*....|....*
gi 500690451 324 GAISVDRWTNHVELPAHIGRARADG 348
Cdd:pfam13458 317 GPVGFRAEDHQAVHCMYLVQVKADG 341
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
9-354 |
1.58e-49 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 169.34 E-value: 1.58e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINASRRFP-FNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSWSRK 87
Cdd:COG0683 6 IGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGVLgRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLSSGVAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 88 EAIPVVEKLD----ALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFG-SRAMLVGANYIWGWENNRIARDIL 162
Cdd:COG0683 86 AVAPVAEEAGvpliSPSATAPALTGPECSPYVFRTAPSDAQQAEALADYLAKKLGaKKVALLYDDYAYGQGLAAAFKAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 163 HRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrfrpekcpiiscnlyegeitg 242
Cdd:COG0683 166 KAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAG------------------------- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 243 lghaaaghftvscyfrtLQSPENDSFLKTLAALdPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDTP 322
Cdd:COG0683 221 -----------------LKGPLNKAFVKAYKAK-YGREPSSYAAAGYDAALLLAEAIEKAGSTDREAVRDALEGLKFDGV 282
|
330 340 350
....*....|....*....|....*....|..
gi 500690451 323 LGAISVDRwTNHVELPAHIGRARADGSFEIVK 354
Cdd:COG0683 283 TGPITFDP-DGQGVQPVYIVQVKADGKFVVVE 313
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
8-342 |
1.83e-43 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 154.00 E-value: 1.83e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 8 PVGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RRfpfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTT 82
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKPMVHAMKLAVEEINAAggllgRQ----IELVAYDTQSDMQKYTQYAQQLILRDKVDVVFGGIT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 83 SWSRkEAI-PVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDI 161
Cdd:cd06356 77 SASR-EAIrPILRRNKILYFYNTQYEGGVCDKNTFCTGSTPEQQVSPLIEWAIKKYGKKVYIIAADYNFGQISADWVKKY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 162 LHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEADdrfrpeKCPIISCNLYEG--- 238
Cdd:cd06356 156 AKKNGGEVVGEEFFPLDVTDFGPTIQKIQAAKPDFVVSLLVGGNHISFYRQWAAAGLKK------KIPIVSTVFGAGneh 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 239 ------EITGLgHAAAGhftvscYFRTLQSPENDSFLKTLAALDPGAI-VDAFYAQAFSAVVMIAEAIMRCGSDDADLVR 311
Cdd:cd06356 230 kvlsppELEGM-YVSYS------YFEELDTPANKAFVAKWRAKYGDEPyINQEAVGVYNAVYLWAEAVEKAGSTEREAVI 302
|
330 340 350
....*....|....*....|....*....|..
gi 500690451 312 GALR-GQSVDTPLGAISVDRWTNHVELPAHIG 342
Cdd:cd06356 303 AALEsGISFDGPSGTVTVDPKSHHAIQNVYLA 334
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
9-344 |
6.19e-39 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 141.96 E-value: 6.19e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVL--FSGSGSYAQPARQGfrGAMTAIAHINAS-----RRfpfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCT 81
Cdd:cd06358 2 IGLLipLSGPAGLWGPSCEA--CAELAAAEINAAggilgRE----VELVLIDAGGPPAEVAAAARRLVDDGAVDAIVGMH 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 82 TSWSRKEA-------IPVVekldallwYPCVYEGFEVSENLIYVAACANQHLVPLLDYIAPRFG-SRAMLVGANYIWGWE 153
Cdd:cd06358 76 TSAVRQALanavggrVPYV--------YTPLYEGGERTPGVYAIGETPEEQLRPALRWLADERRvRRWFLVGNDYVWPRA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 154 NNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEADDRFRpekcpiISC 233
Cdd:cd06358 148 SHAAARRYIARLGGEVVGERFVPLGEDDFERVLARIRASRPDAVLISLVGQDAVDFNRAFAAAGLAGRILR------LSP 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 234 NLYEGEITGLGHAAAGH-FTVSCYFRTLQSPENDSFLKT-LAALDPGA-IVDAFYAQAFSAVVMIAEAIMRCGSDDADLV 310
Cdd:cd06358 222 AIDENVLLAIGADATENlYSASGYFASLRTAANLAFLERyHAAFGDRApPLNALGESCYEGVHFLAALARRAGSLDVRAL 301
|
330 340 350
....*....|....*....|....*....|....
gi 500690451 311 RGALRGQSVDTPLGAISVdrWTNHVELPAHIGRA 344
Cdd:cd06358 302 AAAAEGLTYESPRGAVTL--RGRHARQPVYLARA 333
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
9-296 |
6.93e-25 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 103.18 E-value: 6.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINASRRFPF-NLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSWSRK 87
Cdd:cd06268 2 IGVVVPLTGPYADYGEEILRGVALAVEEINAAGGINGrKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSSVTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 88 EAIPVVEKLDALLWYPCVY---EGFEVSENLIYVAACANQHLVPLLDYIAPRF-GSRAMLVGANYIWGWENNRIARDILH 163
Cdd:cd06268 82 AAAPIYQEAGIPLISPGSTapeLTEGGGPYVFRTVPSDAMQAAALADYLAKKLkGKKVAILYDDYDYGKSLADAFKKALK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 164 RSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrfrpEKCPIISCN-LYEGEITG 242
Cdd:cd06268 162 ALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELG--------LKLPILGGDgLYSPELLK 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 500690451 243 LGHAAA-GHFTVSCYFRTLQSPENDSFLKTLAALdPGAIVDAFYAQAFSAVVMIA 296
Cdd:cd06268 234 LGGEAAeGVVVAVPWHPDSPDPPKQAFVKAYKKK-YGGPPSWRAATAYDATQALA 287
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
9-301 |
3.31e-21 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 92.72 E-value: 3.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINASRR---FPFNLQahHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSWS 85
Cdd:cd19989 2 IGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGilgRPVELV--VEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 86 RKEAIPVVEKLDALLWyPCVYE-----GFEVSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARD 160
Cdd:cd19989 80 ALAVAPKAAELKVPYL-VTVAAddeltGENCNRYTFRVNTSDRMIARALAPWLAENGGKKWYIVYADYAWGQSSAEAFKE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 161 ILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEADDrfrpEKCPIISCNLYEGEI 240
Cdd:cd19989 159 AIEELGGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGLGKK----YKIVGGILSIEPLAL 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500690451 241 TGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAAlDPGAIVDAFYAQAFSAVVMIAEAIMR 301
Cdd:cd19989 235 PALGDAAEGVYGGVRYPPTLDTPANRAFVEAYEK-EYGEAPDNFAGEAYEAMQALAHQAVQ 294
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
122-348 |
2.01e-20 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 91.14 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 122 ANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDILHRSGGEVLGERFVSIGDT-DIDHLIDEVREKRPDFILNN 200
Cdd:cd20014 118 NWQLGYALGKYAAENVGKTVVTIASDYAAGREVVAGFKEGFEAAGGKVVGEIWTPLGTTtDFSPYLTQIAASGPDAVYAF 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 201 LIGPSSYAFLRAYQALGeaddrfRPEKCPIISC-NLYEGE-ITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAALDpG 278
Cdd:cd20014 198 FAGADAVRFVKQYAEFG------LKGKIPLYGPgFLTDEDvLPALGEAAEGIITVLHYAPTLDNPANRAFVAAYQAKY-G 270
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500690451 279 AIVDAFYAQAFSAVVMIAEAIMRCGSD--DADLVRGALRGQSVDTPLGAISVDRWTNHVELPAHIGRARADG 348
Cdd:cd20014 271 RLPDVYAVQGYDAAQVIDAALEAVGGDtsDKDILAAALELGSIDSPRGPFRFDPTTHNPIQNIYLREVVKGG 342
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
9-343 |
2.13e-19 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 88.39 E-value: 2.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RRfpfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTS 83
Cdd:cd06330 2 IGVITPLSGAAAVYGEPARNGAELAVEEINAAggilgRK----IELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 84 WSRKEAIPVVEKLDALL--------------WYPCVyegFEVSEN-LIYVAACANqhlvplldYIAPRFGS--RAMLVGA 146
Cdd:cd06330 78 GVALAVAPVAEELKVLFiatdaatdrlteenFNPYV---FRTSPNtYMDAVAAAL--------YAAKKPPDvkRWAGIGP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 147 NYIWGWENNRIARDIL--HRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFr 224
Cdd:cd06330 147 DYEYGRDSWAAFKAALkkLKPDVEVVGELWPKLGATDYTAYITALLAAKPDGVFSSLWGGDLVTFVKQAKPYG-----L- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 225 PEKCPIISCNLYEGEI-TGLGHAA-AG-HFTVSCYFRTLQSPENDSFlktlaaldpgaiVDAFYA-----------QAFS 290
Cdd:cd06330 221 FDKTKVVSGLGGGSEVlQALGKEMpEGlIGGGRYPFGWPDTPLNKAF------------VEAYRAkygeyptywayEAYA 288
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 500690451 291 AVVMIAEAIMRCGSDDADLVRGALRGQSVDTPLGAISVDRWTNHVELPAHIGR 343
Cdd:cd06330 289 AVMALKAAIEKAGSTDTDKVIAALEGLTFDTPGGKITIRAEDHQAVQPVVVGT 341
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
9-329 |
1.76e-18 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 85.34 E-value: 1.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHIN---ASRRFPFNLQahhfDPAGEADRYASLCRQLIRERDVRHVVGCTTSws 85
Cdd:cd06332 2 IGLLAPLTGPFAALGEDMVRGFELALEEVGgevAGRKVELVVE----DDAGDPDTAVTKARKLVEQDKVDVLIGPLSG-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 86 rKEAIPVVEKLDA-----LLWYPCVYE--GFEVSENLIYVAACANQHLVPLLDYIAPRFGSR-AMLVGANYIWGWENNRI 157
Cdd:cd06332 76 -DEGLAVAPYAKEpgvpfINPVAGADDltQRAKAPNFFRTSFTGSQWSAPLGDYAYKELGYKkVATIGSDYAFGYEQAAG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 158 ARDILHRSGGEVLGERFVSIGDTDIDHLIDEVrEKRPDFILNNLIGPSSYAFLRAYQALGEADdrfrpeKCPII--SCNL 235
Cdd:cd06332 155 FKRGFEAAGGEVVQEIWVPLGTTDFSPYIAQI-PSADDAVFAFLGGADAVRFLKQYREFGLKD------KIPLIggGTTV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 236 YEGEITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAAlDPGAIVDAFYAQAFSAVVMIAEAIMRCGSD--DADLVRGA 313
Cdd:cd06332 228 DESVLPAMGDAALGIISASHYAEGLDNPENKKFVAAYKK-KFGKLPSLYAAGGYDGAQAILEALEAVGGDvsDKQALAAA 306
|
330
....*....|....*.
gi 500690451 314 LRGQSVDTPLGAISVD 329
Cdd:cd06332 307 LRKVKFDSPRGPFSFD 322
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
9-326 |
3.18e-17 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 81.96 E-value: 3.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAH------INASRrfPFNLQAHhfDPAGEADRYASLCRQLIRERDVRHVVGCTT 82
Cdd:cd06328 2 IGVITSLTGPLAAYGKQTERGFELGLEYatdgtmEVDGR--KIEVIVK--DDQGDPDTAKAAATELIGDDGVDILVGTVS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 83 SWSRKEAIPVVEKLDALL--------------WYPCVyegFEVSENliyvaacANQHLVPLLDYIAPRFGSRAMLVGANY 148
Cdd:cd06328 78 SAVALALAPVAEQNKKILivgpaaadsitgenWNKYT---FRTSRN-------SWQDAIAGAKALADPLGKSVAFLAQDY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 149 IWGWENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrfRPEKC 228
Cdd:cd06328 148 AFGQDGVAAFKKALEAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQG------VLDDI 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 229 PIISCNLYEGEITGLGHAAAGHFTVSCYFRTLQ-SPENDSFLKTLAALDpGAIVDAFYAQAFSAVVMIAEAIMRCGSD-D 306
Cdd:cd06328 222 KVVTGGPDIATLAALGDALPGIEGLTYYYYGLPkNPVNDWLVKAHKERY-NAPPDLFTAGGFAAAQAVVRALEKAGGDtD 300
|
330 340
....*....|....*....|
gi 500690451 307 ADLVRGALRGQSVDTPLGAI 326
Cdd:cd06328 301 VEKLIAALEGLTFETPKGKM 320
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
9-329 |
3.66e-16 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 78.78 E-value: 3.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-------RRFPFNLQAHhfDPAGEADRYASLCRQLIRERDVRHVVGCT 81
Cdd:cd06338 2 IGASLSLTGPFAGEGKAQKRGYELWVEDVNAAggvkgggKKRPVELVYY--DDQSDPATAVRLYEKLITEDKVDLLLGPY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 82 TSWSRKEAIPVVEKLDALLWYPC-----VYE-GFEvseNLIYVAACANQHLVPLLDYIApRFGSRAM---LVGANYIWGW 152
Cdd:cd06338 80 SSGLTLAAAPVAEKYGIPMIAGGaasdsIFErGYK---YVFGVLPPASDYAKGLLDLLA-ELGPKPKtvaIVYEDDPFGK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 153 ENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPekcPIIS 232
Cdd:cd06338 156 EVAEGAREAAKKAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELG-----YNP---KAFF 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 233 ---CNLYEGEITGLGHAAAGHFTVSCYFRTL---QSPENDSFLKTLAAlDPGAIVDAFYAQAFSAVVMIAEAIMRCGSDD 306
Cdd:cd06338 228 ltvGPAFPAFREALGKDAEGVLGPSQWEPSLpykVFPGAKEFVKAYKE-KFGEEPSYHAAAAYAAGQVLQQAIEKAGSLD 306
|
330 340
....*....|....*....|...
gi 500690451 307 ADLVRGALRGQSVDTPLGAISVD 329
Cdd:cd06338 307 PEKVRDALASLDFDTVYGPIKFD 329
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
9-329 |
8.27e-15 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 74.87 E-value: 8.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS---RRFPFNLQAhhFDPAGEADRYASLCRQLIRErDVRHVVGCTTSWS 85
Cdd:cd06342 2 IGVAGPLTGPNAALGQDIRNGAELAVDEINAKgggLGFKIELVA--QDDACDPAQAVAAAQKLVAD-GVVAVIGHYNSGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 86 RKEAIPVVEKLDALL-----WYPCV-YEGFEvseNLIYVAACANQHLVPLLDYIAPRFGS-RAMLVGANYIWGWENNRIA 158
Cdd:cd06342 79 AIAAAPIYAEAGIPMispsaTNPKLtEQGYK---NFFRVVGTDDQQGPAAADYAAKTLKAkRVAVIHDGTAYGKGLADAF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 159 RDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEaddrfrpeKCPIISCN-LYE 237
Cdd:cd06342 156 KKALKALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGL--------KAPFMGGDgIVS 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 238 GEITGL-GHAAAGHFTVSCYFRTLQSPENDSFLKTLAALDpGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRG 316
Cdd:cd06342 228 PDFIKAaGDAAEGVYATTPGAPPEKLPAAKAFLKAYKAKF-GEPPGAYAAYAYDAAQVLLAAIEKAGSTDRAAVAAALRA 306
|
330
....*....|...
gi 500690451 317 QSVDTPLGAISVD 329
Cdd:cd06342 307 TDFDGVTGTISFD 319
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
9-348 |
1.94e-12 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 67.71 E-value: 1.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPA---RQGFRGAMTAIAHINASRRfpfnLQAHHFDPAGEADRYASLCRQLIrERDVRHVVGCTTSWS 85
Cdd:cd06360 2 IGVLLPLTGPLAVNGedvRDGFELYFDEIGNQVAGRK----IELIVEDDEGKPDVGLTKARKLV-ERDKVHVLAGIVSSA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 86 RKEAIP--VVEKLdallwYPCVYEGFEVSENLIYVAA--------CANQHLVPLLDYIAPRFGSR-AMLVGANYIWGWEN 154
Cdd:cd06360 77 VAYAVRdyVVEQK-----IPLVISNAGAAPLTQELASpyifrtsfSNGQYDAPFGQYAYEKLGYRrIAVMASDYAAGHEQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 155 NRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEADdrfrpeKCPIISCN 234
Cdd:cd06360 152 AGAFARTFKQAGGKVVQEIYPPLGTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYGLKG------KLPLVGIG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 235 LY--EGEITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAA---LDPGaivdAFYAQAFSAVVMIAEAIMRCGSD--DA 307
Cdd:cd06360 226 GLvdDAILPEQGDAALGIVSYLHYSAALDTPENKAFVQAYRKkygRDPG----LYAEGGYVAARAIAEALEAVKGNveDK 301
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 500690451 308 DLVRGALRGQSVDTPLGAISVDRWTNHVELPAHIGRARADG 348
Cdd:cd06360 302 EAFLEALRKVRFEAPRGPFRFDPYQQAVVTTYIRRVEKVDG 342
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
139-315 |
3.46e-12 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 66.89 E-value: 3.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 139 SRAMLVGANYIWGWEnnriardilHRSG------GEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRA 212
Cdd:cd06359 135 KRVYLLAPNYQAGKD---------ALAGfkrtykGEVVGEIYTPLGQLDFSAELAQIRAAKPDAVFAFYPGGMGVNFVKQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 213 YQALGEADdrfrpeKCPIISCNLYEGE--ITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAAlDPGAIVDAFYAQAFS 290
Cdd:cd06359 206 YAQAGLKK------KIPLYTVGTLDDEdlLPAMGDAALGVLSVSQWSPDLDNPENKRFVAAFRK-KYGRPPSNYAAQGYD 278
|
170 180
....*....|....*....|....*..
gi 500690451 291 AVVMIAEAIMRCGSD--DADLVRGALR 315
Cdd:cd06359 279 AALLIDAAVKAVGGDlsDKDALRAALR 305
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
9-329 |
3.49e-12 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 66.86 E-value: 3.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RrfpfNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTS 83
Cdd:cd19980 2 IGVIAPLSGPVAALGQQVLNGAKLAVEEINAKggvlgR----KLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWCS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 84 WSRKEAIPVVEKLDALLW-----YPCVYEG-----FEVSENLIYVAACANQHLVPLLdyiAPRfgsRAMLVGANYIWGWE 153
Cdd:cd19980 78 SVTLAVMPVAERAKVPLVveissAPKITEGgnpyvFRLNPTNSMLAKAFAKYLADKG---KPK---KVAFLAENDDYGRG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 154 NNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEaddrfrpeKCPIISc 233
Cdd:cd19980 152 AAEAFKKALKAKGVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGL--------KQQLVG- 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 234 nlyEGEITGL------GHAAAGHFTVSCYFRTLQSPENDSFLKTLAALdPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDA 307
Cdd:cd19980 223 ---TGGTTSPdliklaGDAAEGVYGASIYAPTADNPANKAFVAAYKKK-YGEPPDKFAALGYDAVMVIAEAIKKAGSTDP 298
|
330 340
....*....|....*....|...
gi 500690451 308 DLVRGALRGQSV-DTPLGAISVD 329
Cdd:cd19980 299 EKIRAAALKKVDyKGPGGTIKFD 321
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
9-318 |
1.84e-11 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 64.51 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS---RRFPFNLQAhhFDPAGEADRYASLCRQLIRERDVRHVVGCTTSWS 85
Cdd:cd06349 2 IGVSGPLTGDNAEYGQQFKNGVELAVDEINAAggvNGRKLELVV--YDDQGDPKEAVNIAQKFVSDDKVVAVIGDFSSSC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 86 RKEAIPVVEKLDALL--------WYPcvyegfEVSENLIYVAACANQHLVPLLDYIAPRFG-SRAMLVGANYIWGWENNR 156
Cdd:cd06349 80 SMAAAPIYEEAGLVQisptashpDFT------KGGDYVFRNSPTQAVEAPFLADYAVKKLGaKKIAIIYLNTDWGVSAAD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 157 IARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrfrpEKCPIISC-NL 235
Cdd:cd06349 154 AFKKAAKALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLG--------WDVQIFGSsSL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 236 YEGEITGL-GHAAAGHFTVSCYFRTLQSPENDSFLKTLAALDpGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLvRGAL 314
Cdd:cd06349 226 YSPEFIELaGDAAEGVYLSSPFFPESPDPEVKEFVKAYKAKY-GEDPDDFAARAYDAVNILAEAIEKAGTDREAI-RDAL 303
|
....
gi 500690451 315 RGQS 318
Cdd:cd06349 304 ANIK 307
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
164-329 |
8.79e-11 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 62.66 E-value: 8.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 164 RSGGEVLGERFVSIGDTDIDHLIDEVREKRPD--FILNNlIGPSSYAFLRAYQALG--EADDRFrpekcpiiscnLYEGE 239
Cdd:cd20013 159 AAGGKIVGSIRVPLATPDFAPFMQRIKDAKPDavFVFVP-AGAPSIGFLKAYAERGlkEAGIKL-----------LGTGD 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 240 IT------GLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAALD-PGAIVDAFYAQAFSAVVMIAEAIMRC-GSDDADLVR 311
Cdd:cd20013 227 ATddddlpAMGDAALGLITAGHYSAALDSPENKAFVAAYQKAYgPDARPDFMAVAAYDGMALIYKMIKATgGKFDGDKAM 306
|
170
....*....|....*...
gi 500690451 312 GALRGQSVDTPLGAISVD 329
Cdd:cd20013 307 AAVKGLKWESPRGPISID 324
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
9-314 |
2.66e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 61.04 E-value: 2.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINASRRFP----FNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSW 84
Cdd:cd06340 2 IGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGIKslggAKIELVVADTQSDPEVAASEAERLITQEGVVAIIGAYSSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 85 SRKEAIPVVEKLDALLWYPCVyegfeVSENLI-----YV---AACANQH---LVPLLDYIAPRFGS---RAMLVGANYIW 150
Cdd:cd06340 82 VTLAASQVAERYGVPFVTASA-----VADEITergfkYVfrtAPTASQFaedAVDFLKELAKKKGKkikKVAIIYEDSAF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 151 GWENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILnnligPSSYA-----FLRAYQALGeaddrFRP 225
Cdd:cd06340 157 GTSVAKGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPDVVF-----ATSYTndailLLRTMKELG-----FKP 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 226 EkcPIISCN---LYEGEITGLGHAAAGHFTVScYFrtlqSPENDSFLKTLAALD------PGAIVDAFYAQAFSAVVMIA 296
Cdd:cd06340 227 K--AIIGVGggySDPEFLKALGKDAEGVFSVV-PW----SPDLAKKKPGAKEVNerykkkYGEDMTGHAARAYTAAWVLA 299
|
330
....*....|....*...
gi 500690451 297 EAIMRCGSDDADLVRGAL 314
Cdd:cd06340 300 DALERAGSTDPEAIRAAA 317
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
9-329 |
1.07e-09 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 59.09 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAHINAS----RRfpfNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSw 84
Cdd:cd06347 2 IGVIGPLTGEAAAYGQPALNGAELAVDEINAAggilGK---KIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTS- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 85 srKEAIPVVEKLDALlwypcvyegfevseNLIYVAACANQHLVPLLD-------YIAPrFGSRAMlvgANYIW---GWen 154
Cdd:cd06347 78 --SIALAAAPIAQKA--------------KIPMITPSATNPLVTKGGdyifracFTDP-FQGAAL---AKFAYeelGA-- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 155 NRIA-----------------RDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNnligPSSYA----FLRAY 213
Cdd:cd06347 136 KKAAvlydvssdyskglakafKEAFEKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFL----PGYYEeaalIIKQA 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 214 QALGEaddrfrpeKCPIISCNLYEGE--ITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAAlDPGAIVDAFYAQAFSA 291
Cdd:cd06347 212 RELGI--------TAPILGGDGWDSPelLELGGDAVEGVYFTTHFSPDDPSPEVQEFVKAYKA-KYGEPPNAFAALGYDA 282
|
330 340 350
....*....|....*....|....*....|....*....
gi 500690451 292 VVMIAEAIMRCGS-DDADLVRGALRGQSVDTPLGAISVD 329
Cdd:cd06347 283 VMLLADAIKRAGStDPEAIRDALAKTKDFEGVTGTITFD 321
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
9-346 |
3.18e-09 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 58.12 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYAQPARQGFRGAMTAIAhiNASRRFPFNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSwsrKE 88
Cdd:cd20378 2 LGGLVSMSGAFAAAGKLADRGMRLAVE--EYGGALGRPLKYITRDTEGKPGTGVRKVQEAIAQDGARFFIGGTLS---SV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 89 AIPVVEkldallwypcvyegfEVSEN-LIYVAA------------------------CANQHLVPLLDYIaPRfGSRAML 143
Cdd:cd20378 77 ALAVSE---------------EAEKAgGVYITSggadeitgsrcnrstfrwsvptygAIRQTVRPVIKAM-PK-AKRWYT 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 144 VGANYIWGWENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEAddrf 223
Cdd:cd20378 140 ITPQYVFGESLLKNAKEVLKEKGIEHVGNSYHSLGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAVSFGLK---- 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 224 rpEKCPII-------------SCNLYEGEITGLGhaaaghftvscYFRTLQSPENDSFLK-TLAALdpGAIVDAFYAQAF 289
Cdd:cd20378 216 --RKMKILvawssgldqfqelGPDICEGVYFGAQ-----------YWHDVDTPANKALVKvYQAKF--KETPSYALAAGY 280
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 500690451 290 SAVVMIAEAIMRCGSDDADLVRGALRGQSVDTPLGAISVDRWTNHVELPAHIGRARA 346
Cdd:cd20378 281 ACTRMLLDAIDKAGSTDPAAVIKALEGLKYDGITGDEEVRAADHQVLKPYYLLRGKA 337
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
8-329 |
9.12e-09 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 56.47 E-value: 9.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 8 PVGVLFSGSGSYAQPARQGFRGAMTAIAHINAS---RRFPfnLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSW 84
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAggvGGVK--IELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 85 SRKEAIPVVEKLDallwypcvyegfevsenlIYVAACANQ--HLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIAR--- 159
Cdd:cd06348 79 EAFAADPIAQQAK------------------VPVVGISNTapGITDIGPYIFRNSLPEDKVIPPTVKAAKKKYGIKKvav 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 160 -----DILHRSGG------------EVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGEaddr 222
Cdd:cd06348 141 lydqdDAFTVSGTkvfpaalkkngvEVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGL---- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 223 frpeKCPIISCN-LYEGE-ITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAALdPGAIVDAFYAQAFSAVVMIAEAIM 300
Cdd:cd06348 217 ----KGPIVGGNgFNSPDlIKLAGKAAEGVIVGSAWSPDNPDPKNQAFVAAYKEK-YGKEPDQFAAQAYDAAYILAEAIK 291
|
330 340 350
....*....|....*....|....*....|....*
gi 500690451 301 RCGS--DDADLvRGALRGQ----SVDTPLGAISVD 329
Cdd:cd06348 292 KAGSttDRADL-RDALARIliakDFEGPLGPFSFD 325
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
120-342 |
1.47e-08 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 55.74 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 120 ACANQHLVPLLDYIAPR-FGSRAMLVGANYIWGWENNRIARDIL--HRSGGEVLGERFVSIG-DTDIDHLIDEVREKRPD 195
Cdd:cd06329 124 ANADMKMAALADYMKKDgSIKKVYLINQDYSFGRDVAAAAKKNLkkKRPDIEIVGEDLHPLGkVKDFSPYIAKIKASGAD 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 196 FILNNLIGPSSYAFLRAYQALGEaddrfrpeKCPIISCNLYE-GEITGLGHAAAGHFTVSCYFR-TLQSPENDSFLKTLA 273
Cdd:cd06329 204 TVITGNWGNDLTLLMKAARDSGL--------KAPFYTYYADGpGAPAAIGEAGVGRLVAVAYWHpNPKTPELEKFAEAFR 275
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 274 AlDPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDTPLGAISVdRWTNH-VELPAHIG 342
Cdd:cd06329 276 A-KYGRYPDFNIGRTYMGVEMLAAAIKKAGSTDPEKVAKALEGLSFDTPGGPVTM-RADDHqAIQPLYIS 343
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
126-334 |
1.21e-06 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 49.96 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 126 LVPLLDYIAPRFG-SRAMLVGANYIWGWENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGP 204
Cdd:cd06345 130 AEFLKDLLVEKLGfKKVAILAEDAAWGRGIAEALKKLLPEAGLEVVGVERFPTGTTDFTPILSKIKASGADVIVTIFSGP 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 205 SSYAFLRayQAlgeADDRFRPEKCPIISCNLYEG--EITGlGhAAAGHFTVSCYFRTLQSPEndsflKTLaaldpgAIVD 282
Cdd:cd06345 210 GGILLVK--QW---AELGVPAPLVGINVPAQDPEfwENTG-G-AGEYEITLAFAAPKAKVTP-----KTK------PFVD 271
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500690451 283 AFYAQ-----------AFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDTPLGAISVDR--WTNH 334
Cdd:cd06345 272 AYKKKygeapnytaytAYDAIYILAEAIERAGSTDPDALVKALEKTDYEGVRGRIKFDKkdEYPH 336
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
16-217 |
4.87e-06 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 47.92 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 16 SGSYAQPARQGFRGAMTAIAHINAS---RRFPFNLQAHhfDPAGEADRYASLCRQLIRERDVRHVVGCTTSWSRKEAIPV 92
Cdd:cd06326 10 SGPLAELGREYLAGAKAYFDQVNAAggiNGRKIRLVTL--DDGYDPARTVENTRQLIEQDKVVALFGYVGTANVEAVLPL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 93 VEKLDALLWYPC-----VYEGFevSENLIYVAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGWENNRIARDILHRSGG 167
Cdd:cd06326 88 LEEAGVPLVGPLtgadsLREPG--NPYVFHVRASYADEVEKIVRHLATLGLKRIAVVYQDDPFGKEGLAAAEAALAARGL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 500690451 168 EVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALG 217
Cdd:cd06326 166 EPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAG 215
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
8-363 |
5.70e-06 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 47.99 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 8 PVGVLFSGSGSYAQPARQGFRGAMTAIAHINAS-----RrfpfNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTT 82
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAggilgR----KIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 83 SWSRKEAIPVVEKLDALLWYPC-----VYEGFEVSENLIY-VAACANQHLVPLLDYIAPRFGSRAMLVGANYIWGwenNR 156
Cdd:cd06335 77 SGVALATIPILQEAKIPLIIPVatgtaITKPPAKPRNYIFrVAASDTLQADFLVDYAVKKGFKKIAILHDTTGYG---QG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 157 IARDI---LHRSGGE-VLGERFvSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPekcPII- 231
Cdd:cd06335 154 GLKDVeaaLKKRGITpVATESF-KIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLG-----WKV---PLVg 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 232 -----SCNLYEGEitglGHAAAGHFTVSCYFRTLQSPENDSFLKTLAALDPGAIVDAFY--AQAFSAVVMIAEAIMRCGS 304
Cdd:cd06335 225 swglsMPNFIELA----GPLAEGTIMTQTFIEDYLTPRAKKFIDAYKKKYGTDRIPSPVsaAQGYDAVYLLAAAIKQAGS 300
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 500690451 305 DDADLVRGALrgQSVDTPLGAIsvdrwtnhvelpahigrARADGSFEivKRSHEAIAPD 363
Cdd:cd06335 301 TDGKKIRAAL--ENLKGYVGGV-----------------KTYNKPFS--KTDHEALDVS 338
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
146-317 |
7.95e-06 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 47.32 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 146 ANYIWGWENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGpssyafLRAYQALGEADDRFRP 225
Cdd:cd19987 158 ADYTWGHSTEQSMREYTEAHGWKTVGNPATPLGETDFSAALLNAADSGADVLVLVLFG------RDMVNALKQAKQFGLL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 226 EKCPIISCNLYEGEI-TGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLA-----ALDPGAIVDAFYAQAFsavvMIAEAI 299
Cdd:cd19987 232 KKMDIVVPLLTAFMAeSVGPEIMEGVLGTVNWHWSLPDDYSYAFGKAEAfekeyGAYPSQAAASAYVQVL----QYAAAV 307
|
170
....*....|....*...
gi 500690451 300 MRCGSDDADLVRGALRGQ 317
Cdd:cd19987 308 ERAGSFDPPAVIRALEGH 325
|
|
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
263-329 |
8.26e-06 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 47.32 E-value: 8.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 263 PENDSFLKTLAA---LDPG--AIVDAFYAQ-----------AFSAVVMIAEAIMRCGSDDADLVRGALRGQSVDTPLGAI 326
Cdd:PRK15404 262 PASEGMLVTLPKrydQDPAnkAIVDAFKAKkqdpsgpfvwtTYAAVQSLAAGINRAGSDDPAKVAKYLKANTFDTVIGPL 341
|
...
gi 500690451 327 SVD 329
Cdd:PRK15404 342 SWD 344
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
4-324 |
9.58e-06 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 47.23 E-value: 9.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 4 KISFpVGVLfSGSG-SYAQPARQGFRgamTAIAHINAS-------RRFPFNLQAhhFDPAGEADRYASLCRQLIRERDVR 75
Cdd:cd06336 1 KIGF-LGPL-SGPAaAWGLPMLRGLE---LAADEINAAggikvggKKYKVEVVS--YDDKYTPAEAVAAARRLVSQDGVK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 76 HVVGCTTSWSRKEAIPVVEKLDALLWYPCVYEGFEVSENLIYVAACANQHLV--PLLDYIAPRFGS-RAMLVGANYIWGW 152
Cdd:cd06336 74 FIFGPGGSAIAAAVQPVTERNKVLLLTAAFSDPILGPDNPLLFRIPPTPYEYapPFIKWLKKNGPIkTVALIAPNDATGK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 153 ENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILnnLIGPS---SYAFLRAYQALGeaddrFrpeKCP 229
Cdd:cd06336 154 DWAAAFVAAWKAAGGEVVAEEFYDRGTTDFYPVLTKILALKPDALD--LGGSSpgpAGLIIKQARELG-----F---KGP 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 230 IISC---NLYEGEITGLGHAAAGhFTVSCYFRTLQSPENDsfLKTLAAL---DPGAIVDAFYAQAFSAVVMIAEAIMRCG 303
Cdd:cd06336 224 FVSEggaKADEILKEVGGEAAEG-FIGVLPADDDPIASPG--AKAFVERykkKYGEPPNSESALFYDAAYILVKAMEKAG 300
|
330 340
....*....|....*....|..
gi 500690451 304 S-DDADLVRGALRGQSVDTPLG 324
Cdd:cd06336 301 TvDDTKKIRAALAMLSPDETLF 322
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
9-316 |
1.20e-05 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 46.77 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 9 VGVLFSGSGSYA---QPARqgfRGAMTAIAHINASRRF-PFNLQAHHFDPAGEADRYASLCRQLIRERDVRHVVGCTTSW 84
Cdd:cd06333 2 IGAILSLTGPAAslgIPER---NAVELLVEQINAAGGInGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 85 SRKEAIPVVEKL--------------DALlwYPCVyegFEVSENLIYVAAcanqhlvPLLDYIAPRFGSRAMLVGANYIW 150
Cdd:cd06333 79 ESLAVAPIAEEAkvplislagaaaivEPV--RKWV---FKTPQSDSLVAE-------AILDYMKKKGIKKVALLGDSDAY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 151 GwennRIARDILHRS----GGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrfrpE 226
Cdd:cd06333 147 G----QSGRAALKKLapeyGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLG--------Y 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 227 KCPIISC-----NLYegeITGLGHAAAGHFTVScyFRTL---QSPENDSFLKTLAALDP------GAIVDAFYAQAFSAV 292
Cdd:cd06333 215 KGPIYQShgaanQDF---IKLAGKAAEGVILPA--GKLLvadQLPDSDPQKKVLLEFVKayeakyGEGPSTFAGHAYDAL 289
|
330 340
....*....|....*....|....
gi 500690451 293 VMIAEAIMRCGSDDADLVRGALRG 316
Cdd:cd06333 290 LLLVEAIEPAGGTDRAALRDALEN 313
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
162-315 |
8.76e-05 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 44.14 E-value: 8.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 162 LHRSGGEVLGERFVSIGDTDIDHLIDEVREKRP-DFILnnLIG--PSSYAFLRAYQALGEaddrfrpeKCPIISCN-LYE 237
Cdd:cd06344 157 ARELGITIVDRRSYSSDEEDFRRLLSKWKALDFfDAIF--LAGsmPEGAEFIKQARELGI--------KVPIIGGDgLDS 226
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 500690451 238 GE-ITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAAlDPGAIVDAFYAQAFSAVVMIAEAIMRCGSDDADLVRGALR 315
Cdd:cd06344 227 PElIEIAGKAAEGVVVATVFDPDDPRPEVRAFVEAFRK-KYGREPDVWAAQGYDAVKLLAEAIEKAGSTVPAKIASALR 304
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
158-305 |
1.87e-04 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 42.94 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 158 ARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPekcPII---SCN 234
Cdd:cd06343 163 LKEALKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLG-----WKP---TFLgssVSA 234
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500690451 235 LYEGEITGLGHAAAGHFTVScYFRTLQSPENDS---FLKTLAALDPGAIVDAFYAQAFSAVVMIAEAIMRCGSD 305
Cdd:cd06343 235 DPTTLAKAGGDAAEGVYSAS-YLKDPTDADDPAvkeFREAYKKYFPDDPPNAYALYGYAAAQVFVEALKRAGKD 307
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
129-314 |
8.38e-04 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 41.06 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 129 LLDYIAPRFGSRAMLVGANYIWGWENNRIARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILnnLIG--PSS 206
Cdd:cd19979 128 LVEYALKKGCKRPALLLENTGWGRSNLKAMTKALAKKGLQPVGVEWFNWGDTDAKPQLRALKAAGADAIL--LVAnaPEG 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 207 YAFLRAYQAlgeaddrfRPEKCPIIScnlYEGEITGLGHAAAGH--------FTVSCYFRTL-QSPENDSFLKTLAALDP 277
Cdd:cd19979 206 AAIVKALAA--------LPERLPIIS---HWGITGGDFPELPREalskidlrFIQTFSFFDAnQSPRGKQVLARYKRRYP 274
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 500690451 278 GAI--VDAF----YAQAFSAVVMIAEAIMRCGSDDADLVRGAL 314
Cdd:cd19979 275 VEDpeSDIPapvgFAHAYDLTHLLALAIEQAGSTDRAAVRAAL 317
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
29-301 |
2.03e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 39.58 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 29 GAMTAIAHINASRRF---PFNLQAhhFDPAGEADRYASLCRQLIRERDVRHVVGCTTSWSRKEAIPVVEKLdallwypcv 105
Cdd:cd19981 22 GAELAVEQINAAGGIngkKVELVV--YDDQASPKQAVNIAQKLIEQDKVVAVVSGSYSGPTRAAAPIFQEA--------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 106 yegfevseNLIYVAACANQHLVPLL-DYIAprfgsRAMLVGAnyIWGWENNRIARDILH--------------RS----- 165
Cdd:cd19981 91 --------KVPMVSAYAVHPDITKAgDYVF-----RVAFLGP--VQGRAGAEYAVKDLGakkvailtidndfgKSlaagf 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 166 -------GGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrfrpEKCPIISCNLYEG 238
Cdd:cd19981 156 keeakklGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELG--------IKVPIIGQEGYDS 227
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500690451 239 E--ITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAAlDPGAIVDAFYAQAFSAVVMIAEAIMR 301
Cdd:cd19981 228 PkfIEIAGSAAEGVIITTSLNRDSDRPITQKFIKEYRK-RYGIDPDMVAASTYDAVMVLAGEVQK 291
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
186-333 |
3.15e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 39.21 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 186 IDEVREKRPDFILNNLIGPSSYAFLRAYQALGeaddrFRPEKCPIISCNLYEGEITGLGHAAAGHFTVSCYFRTLQspen 265
Cdd:cd06337 194 INAFKKAGVEIVTGVMIPPDFATFWRQAAQQG-----FKPKVVTIGKALLFPSAVAALGDLGDGLSTEVWWSPAHP---- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 266 dsFLKTLAALDPGAIVDAF-------------YAQAFSAVVmiAEAIMRCGSDDADLVRGALRGQSVDTPLGAIsvdRWT 332
Cdd:cd06337 265 --FKSSLTGQTAAELADAYekatgkqwtqplgYAHALFEVA--VDALKRAGSPDDEAVRAALADTDLDTIVGPV---DFT 337
|
.
gi 500690451 333 N 333
Cdd:cd06337 338 S 338
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
157-301 |
4.76e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 38.76 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500690451 157 IARDILHRSGGEVLGERFVSIGDTDIDHLIDEVREKRPDFILNNLIGPSSYAFLRAYQALGeADDRFrpekcpiISCNlY 236
Cdd:cd06334 159 ALKAYAKELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLG-LKTKF-------IGNI-W 229
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500690451 237 ---EGEITGLGHAAAGHFTVSCYFRTLQSPENDSFLKTLAALDPGAIVDAF----YAQAFSAVVMIAEAIMR 301
Cdd:cd06334 230 ggdEDLIKLAGDAAEGYVGVSPFAFGTDDPPGKEIVEEVAKKGKGDGPEEVgtvyYNRGWATAMLAVEAIRR 301
|
|
| |
