|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
1-494 |
9.94e-176 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 502.38 E-value: 9.94e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 1 MLQFLQRIGKALMLPIAVLPAAGLLLRLG----QPDVFDIPVMAQAGAAIFDNLALIFAIGVAIGLSVDgsgaaglagai 76
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKD----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 77 gylvmknttntlsvsystaelNDKLKSVQDLLGSVDPSKLADTMTKVSkAAALTPKINMAILG------GIIAGIVAGLL 150
Cdd:TIGR01998 70 ---------------------NDGAAALAGLVAYFVVTKVLSPPPLAA-ALGIKSEINMAFSAwknvfvGILAGLIAGAL 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 151 YNKFHKIKLPEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNRLLIPIGLHH 230
Cdd:TIGR01998 128 YNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHH 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 231 VMNTYFWFV---LGDFTNAAGDivhGDIARFFAkdpSAGMFMTGFFPVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLA 307
Cdd:TIGR01998 208 ALNSVFWFDvagINDFGNFTGG---GDLNRFKG---IAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVA 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 308 LTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGFSFSAGAIDYFLNFGIATK--PLLLAGIGLIYAA 385
Cdd:TIGR01998 282 FASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTAnqPLMLLVQGLVFFA 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 386 IYFVVFYFLIKKFNLKTPGREDDEELATDDEAPVAG-----SIGEAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNES 460
Cdd:TIGR01998 362 LYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTgdskmQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEP 441
|
490 500 510
....*....|....*....|....*....|....
gi 500740850 461 ALKRAGARGVMKLSNTSVQVIVGTNVESVAEDMK 494
Cdd:TIGR01998 442 ALKALGARGVVKLGKHNLQVILGPLAEIVAGEMK 475
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-497 |
7.35e-166 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 483.60 E-value: 7.35e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 1 MLQFLQRIGKALMLPIAVLPAAGLLLRLGQPDVFDIPVMAQAGAAIFDNLALIFAIGVAIGLSVDGSGAAGLAGAIGYLV 80
Cdd:PRK10255 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 81 MKNTTNTLSvsystaelndklksvqdllgsvdpskladtmtkvskaaaltPKINMAILGGIIAGIVAGLLYNKFHKIKLP 160
Cdd:PRK10255 83 LTKAMVTIN-----------------------------------------PEINMGVLAGIITGLVGGAAYNRWSDIKLP 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 161 EWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNRLLIPIGLHHVMNTYFWFVL 240
Cdd:PRK10255 122 DFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQI 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 241 GDFTNAAGDIVHGDIARFFAKDPSAGMFMTGFFPVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLALTSFLTGITEPIE 320
Cdd:PRK10255 202 GEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLE 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 321 FSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGFSFSAGAIDYFLNFGI--ATKPL-LLAGIGLIYAAIYFVVFYFLIKK 397
Cdd:PRK10255 282 FLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLpaASQNVwMLLVMGVVFFAIYFVLFSAVIRM 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 398 FNLKTPGREDDEELATDDEAPVAGSIG-----EAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMK 472
Cdd:PRK10255 362 FNLKTPGREDKEDEIVTEEANSNTEEGltqlaTNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVK 441
|
490 500
....*....|....*....|....*
gi 500740850 473 LSNTSVQVIVGTNVESVAEDMKKHV 497
Cdd:PRK10255 442 LNKQTIQVIVGAKAESIGDAMKKVV 466
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-497 |
3.19e-76 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 246.78 E-value: 3.19e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 1 MLQFLQRIGKALMLPIAVLPAAGLLLRLGQ----PDVFD--------IPVMAQAGAAIFDNLALIFAIGVAIGLSVDgsg 68
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGegsflsgtYQILNAAGDAVFYFLPLLFAIGAAKGFGGN--- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 69 aAGLAGAIGYLVMkntTNTLSVSYSTAELNDKLKSVQDLLGSvdpskladtmtkvskaaaltpkiNMAILGGIIAGIVAG 148
Cdd:COG1263 85 -PALAAVIGYLLV---HPTLLNAYAVAGGYISFLGIPTLIGY-----------------------QGGVFPGILAGWLAA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 149 LLyNKFHKIKLPEWLGFFagkrFVPIITSVVMLLLGL-VFGQIWPTIQSGIDAVAHGIVNL-GSIGSGLFGLLNRLLIPI 226
Cdd:COG1263 138 YL-EKFLKKKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGLaGAIGGFIYGFLYRLLVPT 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 227 GLHHVMNTYFWFVLGDftnaagdivHGDIarffakdpsagmfmtGFFPV---MMFGLPAACFAMIAAAKPekRKMVTGML 303
Cdd:COG1263 213 GLHHGLNPIFWFLLGG---------TGDD---------------GLFPIlaaAMFGQPGAALAVYLKAKP--NKKVKGLA 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 304 AGLALTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHdGFSFS-AGAIDYFLNFGIATKPLLLAGIGLI 382
Cdd:COG1263 267 ISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVK-AFSFGvGGLIDFPSILNPGATNLLLYLIGLV 345
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 383 YAAIYFVVFYFLIkkfnlktpGREDDEELATD-DEAPVAGSIGEAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESA 461
Cdd:COG1263 346 IAFVYYFVFTFLI--------GREDEEEEEKLaTKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKD 417
|
490 500 510
....*....|....*....|....*....|....*.
gi 500740850 462 LKRAGARGVMKLSNTSVQVIVGTNVESVAEDMKKHV 497
Cdd:COG1263 418 VVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIII 453
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
9-339 |
2.51e-47 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 166.37 E-value: 2.51e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 9 GKALMLPIAVLPAAGLLLRLG--------------QPDVFDIPVMAQAGAAIFDNLALIFAIGVAIGLSVDGSGAAGLAG 74
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 75 AIGYLVMKNTTntlsvsystaelndklksVQDLLGSVDPSKLAdtmtkvskAAALTPKINMAILGGIIAGIVAGLLYNKF 154
Cdd:pfam02378 81 IGLLSFNLAAA------------------ISVALTAAGLSGGG--------NILGIGLGATGVFGAIIPGLLAAYLYNRF 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 155 HK---IKLPEWLGFFAGKRFVPIITS-VVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGS-IGSGLFGLLNRLLIPIGLH 229
Cdd:pfam02378 135 EKnitIKLPDSLPFFVGKRFVPIITGfVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGGiLGGLIFGFLERLLWPFGLH 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 230 HVMNTYFWFVLGDFTNAAGDIVhgdiarffAKDPSAGMFMTGFFpVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLALT 309
Cdd:pfam02378 215 GAFIAIFWFLPIGGSNPIANQQ--------AYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 500740850 310 SFLTGITEPIEFSFMFLSPVLYGIHAVLTG 339
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
425-496 |
4.26e-22 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 89.90 E-value: 4.26e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500740850 425 EAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMKLSNTSVQVIVGTNV-ESVAEDMKKH 496
Cdd:cd00212 5 KDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLL 77
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
1-494 |
9.94e-176 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 502.38 E-value: 9.94e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 1 MLQFLQRIGKALMLPIAVLPAAGLLLRLG----QPDVFDIPVMAQAGAAIFDNLALIFAIGVAIGLSVDgsgaaglagai 76
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKD----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 77 gylvmknttntlsvsystaelNDKLKSVQDLLGSVDPSKLADTMTKVSkAAALTPKINMAILG------GIIAGIVAGLL 150
Cdd:TIGR01998 70 ---------------------NDGAAALAGLVAYFVVTKVLSPPPLAA-ALGIKSEINMAFSAwknvfvGILAGLIAGAL 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 151 YNKFHKIKLPEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNRLLIPIGLHH 230
Cdd:TIGR01998 128 YNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHH 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 231 VMNTYFWFV---LGDFTNAAGDivhGDIARFFAkdpSAGMFMTGFFPVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLA 307
Cdd:TIGR01998 208 ALNSVFWFDvagINDFGNFTGG---GDLNRFKG---IAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVA 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 308 LTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGFSFSAGAIDYFLNFGIATK--PLLLAGIGLIYAA 385
Cdd:TIGR01998 282 FASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVLSFNNPTAnqPLMLLVQGLVFFA 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 386 IYFVVFYFLIKKFNLKTPGREDDEELATDDEAPVAG-----SIGEAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNES 460
Cdd:TIGR01998 362 LYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTgdskmQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEP 441
|
490 500 510
....*....|....*....|....*....|....
gi 500740850 461 ALKRAGARGVMKLSNTSVQVIVGTNVESVAEDMK 494
Cdd:TIGR01998 442 ALKALGARGVVKLGKHNLQVILGPLAEIVAGEMK 475
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-497 |
7.35e-166 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 483.60 E-value: 7.35e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 1 MLQFLQRIGKALMLPIAVLPAAGLLLRLGQPDVFDIPVMAQAGAAIFDNLALIFAIGVAIGLSVDGSGAAGLAGAIGYLV 80
Cdd:PRK10255 3 ILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 81 MKNTTNTLSvsystaelndklksvqdllgsvdpskladtmtkvskaaaltPKINMAILGGIIAGIVAGLLYNKFHKIKLP 160
Cdd:PRK10255 83 LTKAMVTIN-----------------------------------------PEINMGVLAGIITGLVGGAAYNRWSDIKLP 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 161 EWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNRLLIPIGLHHVMNTYFWFVL 240
Cdd:PRK10255 122 DFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQI 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 241 GDFTNAAGDIVHGDIARFFAKDPSAGMFMTGFFPVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLALTSFLTGITEPIE 320
Cdd:PRK10255 202 GEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLE 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 321 FSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGFSFSAGAIDYFLNFGI--ATKPL-LLAGIGLIYAAIYFVVFYFLIKK 397
Cdd:PRK10255 282 FLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLpaASQNVwMLLVMGVVFFAIYFVLFSAVIRM 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 398 FNLKTPGREDDEELATDDEAPVAGSIG-----EAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMK 472
Cdd:PRK10255 362 FNLKTPGREDKEDEIVTEEANSNTEEGltqlaTNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVK 441
|
490 500
....*....|....*....|....*
gi 500740850 473 LSNTSVQVIVGTNVESVAEDMKKHV 497
Cdd:PRK10255 442 LNKQTIQVIVGAKAESIGDAMKKVV 466
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
5-493 |
3.62e-143 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 420.34 E-value: 3.62e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 5 LQRIGKALMLPIAVLPAAGLLLRLG----QPDVFD-IP------------VMAQAGAAIFDNLALIFAIGVAIGLSvDGS 67
Cdd:TIGR02002 8 LQKIGKALMLPVAVLPVAGILLGFGnanqNNQVFSfLPflhmewiqlvskVMEAAGGIIFANLPLIFAIGVALGLA-GND 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 68 GAAGLAGAIGYLVMKNTtntlsvsystaelndklksvqdlLGSVDPSKLADTMTKVSKAAALT--PKINMAILGGIIAGI 145
Cdd:TIGR02002 87 GVAGLAALVGYLIMNKT-----------------------MGVVAGLTLLLIASEIASFASVLgiPTLQTGVFGGIIIGA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 146 VAGLLYNKFHKIKLPEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLG-SIGSGLFGLLNRLLI 224
Cdd:TIGR02002 144 IAAYCYNRFYNIKLPEYLGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNpVVAFFIFGFIERSLI 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 225 PIGLHHVMNTYFWFVLGDFTNAAGDIVHGDIARFFA--KDP---SAGMFMTGFFPVMMFGLPAACFAMIAAAKPEKRKMV 299
Cdd:TIGR02002 224 PFGLHHIFNAPFWFEFGSYTNEAGNLFRGDQPIFMAqlKDGvafTAGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLV 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 300 TGMLAGLALTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGFSFSAGAIDYFLnFGIA---TKPLLL 376
Cdd:TIGR02002 304 GGLMISAALTSFLTGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFIL-YGLLsnrSKAWLF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 377 AGIGLIYAAIYFVVFYFLIKKFNLKTPGREDDeelatDDEAPVAGSIGE---AYVTALGGKDNLTVIDNCATRLRLQVKD 453
Cdd:TIGR02002 383 IIVGIGYAIIYYFLFRFLIKKLNLKTPGREDA-----TAEAKATGEPSElafDVVAALGGKENITSLDACITRLRVSVAD 457
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 500740850 454 ANLVNESALKRAGARGVMKLSNtSVQVIVGTNVESVAEDM 493
Cdd:TIGR02002 458 ISKVDVAKLKKLGAAGVLVVGN-NVQAIFGPKSDTIKSEM 496
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
5-493 |
7.49e-140 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 411.03 E-value: 7.49e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 5 LQRIGKALMLPIAVLPAAGLLLRLGQPDVFDIP-----VMAQAGAAIFDNLALIFAIGVAIGLSvDGSGAAGLAGAIGYL 79
Cdd:PRK11089 9 LQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPavvshVMAEAGGSVFANMPLIFAIGVALGFT-NNDGVSALAAVVAYG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 80 VMkntTNTLSVsysTAELNDKLKSVQdllgsVDPSKLADTmtkvskaaaltpkinmAILGGIIAGIVAGLLYNKFHKIKL 159
Cdd:PRK11089 88 IM---VKTMAV---VAPLVLHLPAEE-----IAAKHLADT----------------GVLGGIIAGAIAAYMFNRFYRIKL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 160 PEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLG-SIGSGLFGLLNRLLIPIGLHHVMNTYFWF 238
Cdd:PRK11089 141 PEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNpVVAFGIYGFVERSLVPFGLHHIWNVPFQM 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 239 VLGDFTNAAGDIVHGDIARFFAKDPSAGMFMTGFFpVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLALTSFLTGITEP 318
Cdd:PRK11089 221 QIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFL-FKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEP 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 319 IEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGFSFSAGAIDYFLNFGIATKPLLLAGIGLIYAAIYFVVFYFLIKKF 398
Cdd:PRK11089 300 IEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKAL 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 399 NLKTPGREDDEElatdDEAPVAGS-IGEAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMkLSNTS 477
Cdd:PRK11089 380 DLKTPGREDETE----DAKATGTSeMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVV-VAGSG 454
|
490
....*....|....*.
gi 500740850 478 VQVIVGTNVESVAEDM 493
Cdd:PRK11089 455 VQAIFGTKSDNLKTEM 470
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
3-493 |
3.31e-95 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 298.18 E-value: 3.31e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 3 QFLQRIGKALMLPIAVLPAAGLLLRLGQP----------DVFDIPV-------MAQAGAAIFDNLALIFAIGVAIGLSVD 65
Cdd:PRK10110 13 EFFQQLGKTFMLPVALLSFCGIMLGIGSSlsshdvitliPFLGNPVlqaiftwMSKIGSFAFSFLPVMFCIAIPLGLARE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 66 GSGAAGLAGAIGYLVMKNTTN----TLSVSYSTAELNDKLKSVQDLLGsvdpskladtmtkvskaaalTPKINMAILGGI 141
Cdd:PRK10110 93 NKGVAAFAGFVGYAVMNLAVNfwltNKGILPTTDAAVLKANNIQSILG--------------------IQSIDTGILGAV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 142 IAGIVAGLLYNKFHKIKLPEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNR 221
Cdd:PRK10110 153 IAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGER 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 222 LLIPIGLHHVMNTYFWFV-LGDFTNAAGDIVHGDIARFFAK---------DPSAGMFMT-GFFPVMMFGLPAACFAMIAA 290
Cdd:PRK10110 233 LLLPFGLHHILVALIRFTdAGGTQEVCGQTVSGALTIFQAQlscptthgfSESATRFLSqGKMPAFLGGLPGAALAMYHC 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 291 AKPEKRKMVTGMLAGLALTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGfSFSAGAIDyFLNFGI- 369
Cdd:PRK10110 313 ARPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIG-NTDGNIID-FVVFGIl 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 370 ---ATKPLLLAGIGLIYAAIYFVVFYFLIKKFNLKTPGREDDEELATDDEAPVA----GSIGEAYVTALGGKDNLTVIDN 442
Cdd:PRK10110 391 hglSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGApgksGYNVPAILEALGGADNIVSLDN 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 500740850 443 CATRLRLQVKDANLVNESALKRAGARGVMKLSNTSVQVIVGTNVESVAEDM 493
Cdd:PRK10110 471 CITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEM 521
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
3-494 |
5.43e-84 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 268.63 E-value: 5.43e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 3 QFLQRIGKALMLPIAVLPAAGLLLRLGQPDVFD-----IPV------------MAQAGAAIFDNLALIFAIGVAIGLSVD 65
Cdd:TIGR02004 6 EFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEamietIPFlgkpafkiifqwMSTIGLVAFAYLPVMFAMAIPLGLARE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 66 GSGAAGLAGAIGYLVMKNTTNTLSVSYSTAELNDKLKS--VQDLLGsvdpskladtmtkvskaaalTPKINMAILGGIIA 143
Cdd:TIGR02004 86 EKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLREagQGMVFG--------------------IQSIDTGVLGAVIV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 144 GIVAGLLYNKFHKIKLPEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNRLL 223
Cdd:TIGR02004 146 GLIVYKLHNRFYTVQMPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 224 IPIGLHHVMNTYFWFV-LGDFTNAAGDIVHGDIARFFAK---------DPSAGMFMT-GFFPVMMFGLPAACFAMIAAAK 292
Cdd:TIGR02004 226 LPIGLHHILVAMIRFTeAGGSAVVCGKEVSGALNIFYAElqcnlpisaVPSATAFLSqGKMPTFLGGLPGAALAMYHCAR 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 293 PEKRKMVTGMLAGLALTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDGfSFSAGAIDyFLNFGI--- 369
Cdd:TIGR02004 306 PANRHKIKALLLSGVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIG-NTDGNLID-FLVFGVlqg 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 370 -ATKPLLLAGIGLIYAAIYFVVFYFLIKKFNLKTPGRED--DEELATDDEAPV---AGSIGEAYVTALGGKDNLTVIDNC 443
Cdd:TIGR02004 384 tYTKWYLVPIVAAIWFVVYYFVFKTAITTFDLKTPGREKvlDAEEYTEQEVAYkktGGYDAAAILAALGGQENIQSLDNC 463
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 500740850 444 ATRLRLQVKDANLVNESALKRAGARGVMKLSNTSVQVIVGTNVESVAEDMK 494
Cdd:TIGR02004 464 ITRLRLVVADANKVDDAKLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLE 514
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-497 |
3.19e-76 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 246.78 E-value: 3.19e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 1 MLQFLQRIGKALMLPIAVLPAAGLLLRLGQ----PDVFD--------IPVMAQAGAAIFDNLALIFAIGVAIGLSVDgsg 68
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGegsflsgtYQILNAAGDAVFYFLPLLFAIGAAKGFGGN--- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 69 aAGLAGAIGYLVMkntTNTLSVSYSTAELNDKLKSVQDLLGSvdpskladtmtkvskaaaltpkiNMAILGGIIAGIVAG 148
Cdd:COG1263 85 -PALAAVIGYLLV---HPTLLNAYAVAGGYISFLGIPTLIGY-----------------------QGGVFPGILAGWLAA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 149 LLyNKFHKIKLPEWLGFFagkrFVPIITSVVMLLLGL-VFGQIWPTIQSGIDAVAHGIVNL-GSIGSGLFGLLNRLLIPI 226
Cdd:COG1263 138 YL-EKFLKKKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGLaGAIGGFIYGFLYRLLVPT 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 227 GLHHVMNTYFWFVLGDftnaagdivHGDIarffakdpsagmfmtGFFPV---MMFGLPAACFAMIAAAKPekRKMVTGML 303
Cdd:COG1263 213 GLHHGLNPIFWFLLGG---------TGDD---------------GLFPIlaaAMFGQPGAALAVYLKAKP--NKKVKGLA 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 304 AGLALTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHdGFSFS-AGAIDYFLNFGIATKPLLLAGIGLI 382
Cdd:COG1263 267 ISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVK-AFSFGvGGLIDFPSILNPGATNLLLYLIGLV 345
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 383 YAAIYFVVFYFLIkkfnlktpGREDDEELATD-DEAPVAGSIGEAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESA 461
Cdd:COG1263 346 IAFVYYFVFTFLI--------GREDEEEEEKLaTKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKD 417
|
490 500 510
....*....|....*....|....*....|....*.
gi 500740850 462 LKRAGARGVMKLSNTSVQVIVGTNVESVAEDMKKHV 497
Cdd:COG1263 418 VVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIII 453
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
2-491 |
4.37e-72 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 237.79 E-value: 4.37e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 2 LQFLQRIGKALMLPIAVLPAAGLLLRLG----QPDVFD------------IPVMAQAGAAIFDNLALIFAIGVAIGLSVD 65
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAilfkNPDIMGsladqntfwykfWSVIEEGGWTVFRQMPLIFVVGLPIGLAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 66 GSGAAGLAGAIGYLVMK---NTTNTLSVSYSTAELNDKLKSVQDLLGSVDPSKLADTmtkvskaaaltpkinmAILGGII 142
Cdd:TIGR02005 81 AQGRACLAALMGYLTFNyfiNAILTQWGSSFGVNFTQGVGVGVSGLTSIAGIKTLDT----------------SIIGAII 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 143 AGIVAGLLYNKFHKIKLPEWLGFFAGKRFVPIITSVVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGSIGSGLFGLLNRL 222
Cdd:TIGR02005 145 ISGIITYIHNRFFDKRLPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERI 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 223 LIPIGLHHvmntyfwFVLGDFTNAAGDIVHGdIARFFAK---------DPSAGMFMTGFFPVM----MFGLPAACFAMIA 289
Cdd:TIGR02005 225 LIPTGLHH-------FIYGPFIFGPAVVNHG-IQAYWAQhlnefakstKPLKELFPYGGFALHgnskVFGCLGIALAMYA 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 290 AAKPEKRKMVTGMLAGLALTSFLTGITEPIEFSFMFLSPVLYGIHAVLTGISLFVTTSLGIHDgfSFSAGAIDYFLNFGI 369
Cdd:TIGR02005 297 TAPPENRKKVAGLLIPATLTAVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVG--NMGGGLIDFIATNWL 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 370 ------ATKPLLLAGIGLIYAAIYFVVFYFLIKKFNLKTPGREDDEEL---------------ATD-DEAPVAGSIGEAY 427
Cdd:TIGR02005 375 plfknhWGTYVTQIIIGLCFTAIYFLVFRFLILKFNIPTPGREDTEEEvklyskadykakkgdSVEsKRASSGNDKAAYF 454
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500740850 428 VTALGGKDNLTVIDNCATRLRLQVKD-ANLVNESALKRAGARGVMKlSNTSVQVIVGTNVESVAE 491
Cdd:TIGR02005 455 LQALGGKENIKDVTNCATRLRISVKDeSKVLDDEVFKKAGAHGVVR-SGKAIQVIVGLSVPQVRE 518
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
9-339 |
2.51e-47 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 166.37 E-value: 2.51e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 9 GKALMLPIAVLPAAGLLLRLG--------------QPDVFDIPVMAQAGAAIFDNLALIFAIGVAIGLSVDGSGAAGLAG 74
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 75 AIGYLVMKNTTntlsvsystaelndklksVQDLLGSVDPSKLAdtmtkvskAAALTPKINMAILGGIIAGIVAGLLYNKF 154
Cdd:pfam02378 81 IGLLSFNLAAA------------------ISVALTAAGLSGGG--------NILGIGLGATGVFGAIIPGLLAAYLYNRF 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 155 HK---IKLPEWLGFFAGKRFVPIITS-VVMLLLGLVFGQIWPTIQSGIDAVAHGIVNLGS-IGSGLFGLLNRLLIPIGLH 229
Cdd:pfam02378 135 EKnitIKLPDSLPFFVGKRFVPIITGfVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGGiLGGLIFGFLERLLWPFGLH 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 230 HVMNTYFWFVLGDFTNAAGDIVhgdiarffAKDPSAGMFMTGFFpVMMFGLPAACFAMIAAAKPEKRKMVTGMLAGLALT 309
Cdd:pfam02378 215 GAFIAIFWFLPIGGSNPIANQQ--------AYGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 500740850 310 SFLTGITEPIEFSFMFLSPVLYGIHAVLTG 339
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
423-497 |
4.15e-28 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 106.74 E-value: 4.15e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500740850 423 IGEAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMKlSNTSVQVIVGTNVESVAEDMKKHV 497
Cdd:COG1264 3 LAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVK-NGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
425-496 |
4.26e-22 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 89.90 E-value: 4.26e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500740850 425 EAYVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMKLSNTSVQVIVGTNV-ESVAEDMKKH 496
Cdd:cd00212 5 KDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLL 77
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
396-483 |
9.41e-19 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 80.87 E-value: 9.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 396 KKFNLKTPGREDDEELATDDEAPVAGSIGEA-YVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMKLS 474
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAgQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQ 80
|
....*....
gi 500740850 475 NTsVQVIVG 483
Cdd:TIGR00826 81 RA-VQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
378-493 |
5.86e-17 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 78.21 E-value: 5.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 378 GIGLIYAAIYFVVFYFLIKKFNLKTPGREdDEELATDDEAPVAGSIGE--------------AYVTALGGKDNLTVIDNC 443
Cdd:PRK09702 14 AIGLCFTLLYFVVFRTLILQFNMCTPGRE-DAEVKLYSKAEYKASRGQttaaepkkeldqaaGILQALGGVGNISSINNC 92
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 500740850 444 ATRLRLQVKD-ANLVNESALKRAGARGVMKlSNTSVQVIVGTNVESVAEDM 493
Cdd:PRK09702 93 ATRLRIALHDmSQTLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQL 142
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
425-456 |
5.38e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 56.99 E-value: 5.38e-11
10 20 30
....*....|....*....|....*....|..
gi 500740850 425 EAYVTALGGKDNLTVIDNCATRLRLQVKDANL 456
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
428-495 |
9.45e-08 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 53.88 E-value: 9.45e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 428 VTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKRA-GARGVMKLSNtSVQVIVGTN-VESVAEDMKK 495
Cdd:PRK14905 282 IDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIdCVKGLFSIAN-QYQIILGAGiVEKIHEEMKA 350
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
417-486 |
5.06e-07 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 52.11 E-value: 5.06e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500740850 417 APVAGSIgeayVTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKR-AGARGVMKlSNTSVQVIVGTNV 486
Cdd:PRK09796 6 AALARSV----IAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTiPGVLGVVR-SDNQCQVIIGNTV 71
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
428-493 |
2.06e-06 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 50.06 E-value: 2.06e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500740850 428 VTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKR-AGARGVMkLSNTSVQVIVGTNVESVAEDM 493
Cdd:PRK09586 13 LTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTiEGVKGVI-LSDDQVQVVLGPGKAQRAAKA 78
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
428-486 |
5.54e-06 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 48.84 E-value: 5.54e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 500740850 428 VTALGGKDNLTVIDNCATRLRLQVKDANLVNESAL-KRAGARGVMKlSNTSVQVIVGTNV 486
Cdd:TIGR01996 10 LELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIeNLDGVKGTFF-NSGQYQIIIGTGV 68
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
428-489 |
2.35e-05 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 46.96 E-value: 2.35e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500740850 428 VTALGGKDNLTVIDNCATRLRLQVKDANLVNESALKR-AGARGVMKlSNTSVQVIVGTNVESV 489
Cdd:TIGR01995 9 IENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKiSGVITVVK-SGGQYQVVIGNDVNDV 70
|
|
| Lgt |
COG0682 |
Prolipoprotein diacylglyceryltransferase [Cell wall/membrane/envelope biogenesis]; |
135-190 |
1.50e-03 |
|
Prolipoprotein diacylglyceryltransferase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440446 [Multi-domain] Cd Length: 253 Bit Score: 40.49 E-value: 1.50e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 500740850 135 MAILGGIIAGIVAGLLYNKFHKIKLPEWLGFFAgkrfvpiitsvVMLLLGLVFGQI 190
Cdd:COG0682 89 LSFHGGLIGGILAAWLFARKRKLPFLKLADAIA-----------PGLPLGQAIGRI 133
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
432-489 |
5.81e-03 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 39.31 E-value: 5.81e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 500740850 432 GGKDNLTVIDNCATRLRLQVKDANLVNESALKRAGARGVMKLSNTSVQVIVGTNVESV 489
Cdd:PRK09824 15 GGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADV 72
|
|
| |
